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9EFE
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BU of 9efe by Molmil
Crystal Structure in space group P21 of a nucleoid-associated protein (UBP) from Sulfolobus islandicus.
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Plasmid pARN4
Authors:Dhanaraju, R, Gonzalez-Gutierrez, G, Bell, S.D.
Deposit date:2024-11-20
Release date:2025-06-11
Last modified:2025-06-18
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:An archaeal nucleoid-associated protein binds an essential motif in DNA replication origins.
Nat Commun, 16, 2025
9H6P
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BU of 9h6p by Molmil
Crystal structure of NUDT14 complexed with novel compound AMNUDT14-003 in spacegroup P1
Descriptor: 3-(1H-indol-6-yl)-1-(1-methylpiperidin-4-yl)pyrazolo[3,4-d]pyrimidin-4-amine, Uridine diphosphate glucose pyrophosphatase NUDT14
Authors:Balikci, E, Koekemoer, L, Dlamini, L.S, Gurav, N, Apostolidou, M, Adcock, C, McGown, A, Marques, A.M.C, Spencer, J, Huber, K.V.M, Structural Genomics Consortium (SGC)
Deposit date:2024-10-24
Release date:2025-11-05
Method:X-RAY DIFFRACTION (3.162 Å)
Cite:Crystal structure of NUDT14 complexed with novel compound AMNUDT14-003 in spacegroup
To Be Published
6RDK
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BU of 6rdk by Molmil
Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 1B, composite map
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ASA-10: Polytomella F-ATP synthase associated subunit 10, ...
Authors:Murphy, B.J, Klusch, N, Yildiz, O, Kuhlbrandt, W.
Deposit date:2019-04-12
Release date:2019-07-03
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F 1 -F o coupling.
Science, 364, 2019
7P17
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BU of 7p17 by Molmil
F(M197)H mutant structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides strain RV by fixed-target serial synchrotron crystallography (room temperature, 12keV)
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate, 1,2-ETHANEDIOL, ...
Authors:Gabdulkhakov, A.G, Selikhanov, G.K, Guenther, S, Meents, A, Fufina, T.Y, Vasilieva, L.G.
Deposit date:2021-07-01
Release date:2022-07-13
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:X-Ray structure of Rhodobacter sphaeroides reaction center with M197 Phe-His substitution clarifies properties of the mutant complex
To Be Published
6RE0
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BU of 6re0 by Molmil
Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 2A, monomer-masked refinement
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ASA-10: Polytomella F-ATP synthase associated subunit 10, ...
Authors:Murphy, B.J, Klusch, N, Yildiz, O, Kuhlbrandt, W.
Deposit date:2019-04-12
Release date:2019-07-03
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F 1 -F o coupling.
Science, 364, 2019
8V0V
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BU of 8v0v by Molmil
SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-EG.5)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Zhang, Q.E, Acharya, P.
Deposit date:2023-11-17
Release date:2024-06-12
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:SARS-CoV-2 Omicron XBB lineage spike structures, conformations, antigenicity, and receptor recognition.
Mol.Cell, 84, 2024
4TK0
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BU of 4tk0 by Molmil
Crystal Structure of human Tankyrase 2 in complex with DPQ.
Descriptor: 5-[4-(piperidin-1-yl)butoxy]-3,4-dihydroisoquinolin-1(2H)-one, Tankyrase-2, ZINC ION
Authors:Qiu, W, Lam, R, Romanov, V, Gordon, R, Gebremeskel, S, Vodsedalek, J, Thompson, C, Beletskaya, I, Battaile, K.P, Pai, E.F, Chirgadze, N.Y.
Deposit date:2014-05-25
Release date:2014-11-05
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Insights into the binding of PARP inhibitors to the catalytic domain of human tankyrase-2.
Acta Crystallogr.,Sect.D, 70, 2014
6O69
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BU of 6o69 by Molmil
Crystal Structure of Double Mutant L380R/F535K of Human Acetylcholinesterase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholinesterase
Authors:Bester, S.M, Height, J.J, Pegan, S.D.
Deposit date:2019-03-05
Release date:2019-05-01
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.081 Å)
Cite:The structural and biochemical impacts of monomerizing human acetylcholinesterase.
Protein Sci., 28, 2019
8YKI
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BU of 8yki by Molmil
FGFR-1 in complex with ligand tasurgratinib
Descriptor: CHLORIDE ION, Fibroblast growth factor receptor 1, Tasurgratinib
Authors:Ikemori-Kawada, M, Watanabe Miyano, S.
Deposit date:2024-03-05
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Antitumor Activity of Tasurgratinib as an Orally Available FGFR1-3 Inhibitor in Cholangiocarcinoma Models With FGFR2-fusion.
Anticancer Res., 44, 2024
7OVI
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BU of 7ovi by Molmil
Protein kinase MKK7 in complex with phenethyltriazole-substituted pyrazolopyrimidine
Descriptor: 1-[(3~{R})-3-[4-azanyl-3-[1-(2-phenylethyl)-1,2,3-triazol-4-yl]pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]propan-1-one, Dual specificity mitogen-activated protein kinase kinase 7
Authors:Kleinboelting, S, Buehrmann, M, Mueller, M.P, Rauh, D.
Deposit date:2021-06-15
Release date:2022-07-20
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Optimization of Covalent MKK7 Inhibitors via Crude Nanomole-Scale Libraries.
J.Med.Chem., 65, 2022
1NC4
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BU of 1nc4 by Molmil
Crystal Structure of Monoclonal Antibody 2D12.5 Fab Complexed with Gd-DOTA
Descriptor: (S)-2-(4-NITROBENZYL)-1,4,7,10-TETRAAZACYCLODODECANE-N,N',N'',N'''-TETRAACETATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Corneillie, T.M, Fisher, A.J, Meares, C.F.
Deposit date:2002-12-04
Release date:2003-12-16
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structures of two complexes of the rare-earth-DOTA-binding antibody 2D12.5: ligand generality from a chiral system.
J.Am.Chem.Soc., 125, 2003
9J17
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BU of 9j17 by Molmil
Structure of the wild-type AZG2 in Arabidopsis thaliana in the trans-Zeatin-bound state-1 at pH 7.4
Descriptor: (2E)-2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol, Adenine/guanine permease AZG2
Authors:Sun, L, Liu, X, Wei, H, Yang, Z, Ying, W.
Deposit date:2024-08-03
Release date:2025-03-19
Last modified:2025-10-01
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis of cytokinin transport by the Arabidopsis AZG2.
Nat Commun, 16, 2025
3JSR
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BU of 3jsr by Molmil
X-Ray structure of All0216 protein from Nostoc sp. PCC 7120 at the resolution 1.8A. Northeast Structural Genomics Consortium target NsR236
Descriptor: All0216 protein, POTASSIUM ION
Authors:Kuzin, A.P, Chen, Y, Seetharaman, J, Mao, M, Xiao, R, Ciccosanti, C, Lee, D, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-09-10
Release date:2009-09-22
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-Ray structure of All0216 protein from Nostoc sp. PCC 7120 at the resolution 1.8A
To be Published
9JB1
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BU of 9jb1 by Molmil
Cryo-EM structure of the type I amyloid-beta 42 fibril containing a D-Asp at positions 7 and 23
Descriptor: Amyloid-beta precursor protein
Authors:Hsiao, L.C, Lee, C.H, Hsu, M.F, Hsu, S.T.
Deposit date:2024-08-26
Release date:2025-03-26
Last modified:2025-04-09
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Impacts of D-aspartate on the Aggregation Kinetics and Structural Polymorphism of Amyloid beta Peptide 1-42.
J.Mol.Biol., 437, 2025
5NIH
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BU of 5nih by Molmil
Crystal structure of the GluA2 ligand-binding domain (S1S2J) in complex with agonist LM-12b at 1.3 A resolution.
Descriptor: (3~{a}~{R},4~{S},6~{a}~{R})-1-methyl-4,5,6,6~{a}-tetrahydro-3~{a}~{H}-pyrrolo[3,4-c]pyrazole-3,4-dicarboxylic acid, ACETATE ION, CHLORIDE ION, ...
Authors:Laulumaa, S, Frydenvang, K.A, Kastrup, J.S.
Deposit date:2017-03-24
Release date:2017-07-26
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure and Affinity of Two Bicyclic Glutamate Analogues at AMPA and Kainate Receptors.
ACS Chem Neurosci, 8, 2017
9JAZ
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BU of 9jaz by Molmil
Cryo-EM structure of the class I amyloid-beta 42 fibril containing a D-Asp at position 23
Descriptor: Amyloid-beta precursor protein
Authors:Hsiao, L.C, Lee, C.H, Hsu, M.F, Hsu, S.T.
Deposit date:2024-08-26
Release date:2025-03-26
Last modified:2025-04-09
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Impacts of D-aspartate on the Aggregation Kinetics and Structural Polymorphism of Amyloid beta Peptide 1-42.
J.Mol.Biol., 437, 2025
8F88
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BU of 8f88 by Molmil
Crystal structure of PTP1B D181A/Q262A/C215A phosphatase domain with monophosphorylated JAK2 activation loop phosphopeptide
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Tyrosine-protein kinase JAK2, Tyrosine-protein phosphatase non-receptor type 1
Authors:Morris, R, Kershaw, N.J, Babon, J.J.
Deposit date:2022-11-21
Release date:2023-07-05
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure guided studies of the interaction between PTP1B and JAK.
Commun Biol, 6, 2023
5NIO
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BU of 5nio by Molmil
EthR complex
Descriptor: HTH-type transcriptional regulator EthR, SULFATE ION, ~{N}-butyl-4-methyl-piperidine-1-carboxamide
Authors:Pohl, E, Tatum, N.J, Cole, J.C, Baulard, A.R.
Deposit date:2017-03-24
Release date:2017-11-15
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:New active leads for tuberculosis booster drugs by structure-based drug discovery.
Org. Biomol. Chem., 15, 2017
4S35
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BU of 4s35 by Molmil
AMPPCP and TMP bound Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Biswas, A, Jeyakanthan, J, Sekar, K, Kuramitsu, S, Yokoyama, S.
Deposit date:2015-01-26
Release date:2016-01-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural studies of a hyperthermophilic thymidylate kinase enzyme reveal conformational substates along the reaction coordinate.
Febs J., 284, 2017
7VR6
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BU of 7vr6 by Molmil
Crystal structure of MlaC from Escherichia coli in quasi-open state
Descriptor: 1,2-ETHANEDIOL, DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, Intermembrane phospholipid transport system binding protein MlaC
Authors:Dutta, A, Kanaujia, S.P.
Deposit date:2021-10-21
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:MlaC belongs to a unique class of non-canonical substrate-binding proteins and follows a novel phospholipid-binding mechanism.
J.Struct.Biol., 214, 2022
6B3A
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BU of 6b3a by Molmil
AprA Methyltransferase 1 - GNAT didomain in complex with Mn2+ and SAM
Descriptor: AprA Methyltransferase 1, GLYCEROL, MANGANESE (II) ION, ...
Authors:Skiba, M.A, Smith, J.L.
Deposit date:2017-09-21
Release date:2017-11-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.784 Å)
Cite:A Mononuclear Iron-Dependent Methyltransferase Catalyzes Initial Steps in Assembly of the Apratoxin A Polyketide Starter Unit.
ACS Chem. Biol., 12, 2017
8DC6
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BU of 8dc6 by Molmil
Crystal structure of p53 Y220C covalently bound to indole KG6
Descriptor: 1-(2-methylprop-2-enoyl)-1H-indole-3-carbaldehyde, bound form, Cellular tumor antigen p53, ...
Authors:Guiley, K.Z, Shokat, K.M.
Deposit date:2022-06-15
Release date:2022-10-12
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.60000908 Å)
Cite:A Small Molecule Reacts with the p53 Somatic Mutant Y220C to Rescue Wild-type Thermal Stability.
Cancer Discov, 13, 2023
6OJK
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BU of 6ojk by Molmil
Structure of YePL2A K291W in Complex with Tetragalacturonic Acid
Descriptor: 1,2-ETHANEDIOL, Periplasmic pectate lyase, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid
Authors:Jones, D.R, Abbott, D.W.
Deposit date:2019-04-11
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A surrogate structural platform informed by ancestral reconstruction and resurrection of a putative carbohydrate binding module hybrid illuminates the neofunctionalization of a pectate lyase.
J.Struct.Biol., 207, 2019
4ZEK
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BU of 4zek by Molmil
PBP AccA from A. tumefaciens C58 in complex with L-arabinose-2-isopropylphosphate
Descriptor: 1,2-ETHANEDIOL, 2-O-[(R)-hydroxy(propan-2-yloxy)phosphoryl]-alpha-L-arabinopyranose, 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL, ...
Authors:El Sahili, A, Morera, S.
Deposit date:2015-04-20
Release date:2015-08-19
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:A Pyranose-2-Phosphate Motif Is Responsible for Both Antibiotic Import and Quorum-Sensing Regulation in Agrobacterium tumefaciens.
Plos Pathog., 11, 2015
7PY4
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BU of 7py4 by Molmil
Cryo-EM structure of ATP8B1-CDC50A in E2P autoinhibited state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, BERYLLIUM TRIFLUORIDE ION, CHOLESTEROL HEMISUCCINATE, ...
Authors:Dieudonne, T, Abad-Herrera, S, Juknaviciute Laursen, M, Lejeune, M, Stock, C, Slimani, K, Jaxel, C, Lyons, J.A, Montigny, C, Gunther Pomorski, T, Nissen, P, Lenoir, G.
Deposit date:2021-10-08
Release date:2022-04-27
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Autoinhibition and regulation by phosphoinositides of ATP8B1, a human lipid flippase associated with intrahepatic cholestatic disorders.
Elife, 11, 2022

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