PDB: 95574 resultsInfo pagesStatus searchChemie searchBIRD

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8UAO	DpHF18 filament Descriptor: DpHF18 Authors: Lynch, E.M, Shen, H, Kollman, J.M, Baker, D. Deposit date: 2023-09-21 Release date: 2024-04-10 Last modified: 2024-08-07 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: De novo design of pH-responsive self-assembling helical protein filaments. Nat Nanotechnol, 19, 2024
8UBG	DpHF19 filament Descriptor: DpHF19,Green fluorescent protein (Fragment) Authors: Lynch, E.M, Shen, H, Kollman, J.M, Baker, D. Deposit date: 2023-09-22 Release date: 2024-04-10 Last modified: 2024-08-07 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: De novo design of pH-responsive self-assembling helical protein filaments. Nat Nanotechnol, 19, 2024
8UHW	The structure of the Clostridium thermocellum AdhE spirosome Descriptor: Aldehyde-alcohol dehydrogenase, FE (III) ION Authors: Ziegler, S.J, Gruber, J.N. Deposit date: 2023-10-09 Release date: 2024-08-21 Method: ELECTRON MICROSCOPY (3.28 Å) Cite: Structural characterization and dynamics of AdhE ultrastructures from Clostridium thermocellum: A containment strategy for toxic intermediates Elife, 2024
8VCT	CyoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 6:2:1 stoichiometry from E. coli Tn7 bound to ATPgS and ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (50-MER), MAGNESIUM ION, ... Authors: Shen, Y, Guarne, A. Deposit date: 2023-12-14 Release date: 2024-07-31 Method: ELECTRON MICROSCOPY (3.83 Å) Cite: Assembly of the Tn7 targeting complex by a regulated stepwise process. Mol.Cell, 84, 2024
8VCJ	CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 7:2:1 stoichiometry from E. coli Tn7 bound to ATPgS and ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA, MAGNESIUM ION, ... Authors: Shen, Y, Guarne, A. Deposit date: 2023-12-14 Release date: 2024-07-31 Method: ELECTRON MICROSCOPY (3.32 Å) Cite: Assembly of the Tn7 targeting complex by a regulated stepwise process. Mol.Cell, 84, 2024
1MGV	Crystal Structure of the R391A Mutant of 7,8-Diaminopelargonic Acid Synthase Descriptor: 7,8-diamino-pelargonic acid aminotransferase, ISOPROPYL ALCOHOL, PYRIDOXAL-5'-PHOSPHATE, ... Authors: Eliot, A.C, Sandmark, J, Schneider, G, Kirsch, J.F. Deposit date: 2002-08-16 Release date: 2002-11-27 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The Dual-Specific Active Site of 7,8-Diaminopelargonic Acid Synthase and the Effect of the R391A Mutation Biochemistry, 41, 2002
1PEZ	Bacillus circulans strain 251 mutant A230V Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETIC ACID, ... Authors: Rozeboom, H.J, Dijkstra, B.W. Deposit date: 2003-05-23 Release date: 2003-10-28 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.32 Å) Cite: Conversion of Cyclodextrin Glycosyltransferase into a Starch Hydrolase by Directed Evolution: The Role of Alanine 230 in Acceptor Subsite +1 Biochemistry, 42, 2003
2W5B	Human Nek2 kinase ATPgammaS-bound Descriptor: CHLORIDE ION, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... Authors: Bayliss, R. Deposit date: 2008-12-08 Release date: 2008-12-23 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Insights Into the Conformational Variability and Regulation of Human Nek2 Kinase. J.Mol.Biol., 386, 2009
1XYA	X-RAY CRYSTALLOGRAPHIC STRUCTURES OF D-XYLOSE ISOMERASE-SUBSTRATE COMPLEXES POSITION THE SUBSTRATE AND PROVIDE EVIDENCE FOR METAL MOVEMENT DURING CATALYSIS Descriptor: HYDROXIDE ION, MAGNESIUM ION, XYLOSE ISOMERASE Authors: Lavie, A, Allen, K.N, Petsko, G.A, Ringe, D. Deposit date: 1994-01-03 Release date: 1994-05-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.81 Å) Cite: X-ray crystallographic structures of D-xylose isomerase-substrate complexes position the substrate and provide evidence for metal movement during catalysis. Biochemistry, 33, 1994
1XYC	X-RAY CRYSTALLOGRAPHIC STRUCTURES OF D-XYLOSE ISOMERASE-SUBSTRATE COMPLEXES POSITION THE SUBSTRATE AND PROVIDE EVIDENCE FOR METAL MOVEMENT DURING CATALYSIS Descriptor: 3-O-METHYLFRUCTOSE IN LINEAR FORM, MAGNESIUM ION, XYLOSE ISOMERASE Authors: Lavie, A, Allen, K.N, Petsko, G.A, Ringe, D. Deposit date: 1994-01-03 Release date: 1994-05-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.19 Å) Cite: X-ray crystallographic structures of D-xylose isomerase-substrate complexes position the substrate and provide evidence for metal movement during catalysis. Biochemistry, 33, 1994
1XYB	X-RAY CRYSTALLOGRAPHIC STRUCTURES OF D-XYLOSE ISOMERASE-SUBSTRATE COMPLEXES POSITION THE SUBSTRATE AND PROVIDE EVIDENCE FOR METAL MOVEMENT DURING CATALYSIS Descriptor: D-glucose, MAGNESIUM ION, XYLOSE ISOMERASE Authors: Lavie, A, Allen, K.N, Petsko, G.A, Ringe, D. Deposit date: 1994-01-03 Release date: 1994-05-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.96 Å) Cite: X-ray crystallographic structures of D-xylose isomerase-substrate complexes position the substrate and provide evidence for metal movement during catalysis. Biochemistry, 33, 1994
2G2F	A Src-like Inactive Conformation in the Abl Tyrosine Kinase Domain Descriptor: ATP-Peptide Conjugate, Abl Kinase, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... Authors: Levinson, N.M, Kuchment, O. Deposit date: 2006-02-15 Release date: 2006-05-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.7 Å) Cite: A SRC-like inactive conformation in the abl tyrosine kinase domain. Plos Biol., 4, 2006
152L	CONSERVATION OF SOLVENT-BINDING SITES IN 10 CRYSTAL FORMS OF T4 LYSOZYME Descriptor: SULFATE ION, T4 LYSOZYME Authors: Matsumura, M, Weaver, L.H, Matthews, B.W. Deposit date: 1994-01-26 Release date: 1994-05-31 Last modified: 2020-07-22 Method: X-RAY DIFFRACTION (2 Å) Cite: Conservation of solvent-binding sites in 10 crystal forms of T4 lysozyme. Protein Sci., 3, 1994
1JMF	CONTRIBUTIONS OF ORIENTATION AND HYDROGEN BONDING TO CATALYSIS IN ASN-229 MUTANTS OF THYMIDYLATE SYNTHASE Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, THYMIDYLATE SYNTHASE Authors: Finer-Moore, J, Stroud, R.M. Deposit date: 1997-09-13 Release date: 1998-01-28 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Contributions of orientation and hydrogen bonding to catalysis in Asn229 mutants of thymidylate synthase. J.Mol.Biol., 276, 1998
1JMH	CONTRIBUTIONS OF ORIENTATION AND HYDROGEN BONDING TO CATALYSIS IN ASN-229 MUTANTS OF THYMIDYLATE SYNTHASE Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, THYMIDYLATE SYNTHASE Authors: Finer-Moore, J, Stroud, R.M. Deposit date: 1997-09-13 Release date: 1998-01-28 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Contributions of orientation and hydrogen bonding to catalysis in Asn229 mutants of thymidylate synthase. J.Mol.Biol., 276, 1998
1JMI	CONTRIBUTIONS OF ORIENTATION AND HYDROGEN BONDING TO CATALYSIS IN ASN-229 MUTANTS OF THYMIDYLATE SYNTHASE Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, THYMIDYLATE SYNTHASE Authors: Finer-Moore, J, Stroud, R.M. Deposit date: 1997-09-13 Release date: 1998-01-28 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Contributions of orientation and hydrogen bonding to catalysis in Asn229 mutants of thymidylate synthase. J.Mol.Biol., 276, 1998
1JMG	CONTRIBUTIONS OF ORIENTATION AND HYDROGEN BONDING TO CATALYSIS IN ASN-229 MUTANTS OF THYMIDYLATE SYNTHASE Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, THYMIDYLATE SYNTHASE Authors: Finer-Moore, J, Stroud, R.M. Deposit date: 1997-09-13 Release date: 1998-01-28 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Contributions of orientation and hydrogen bonding to catalysis in Asn229 mutants of thymidylate synthase. J.Mol.Biol., 276, 1998
8UQE	Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 26-residue linker (RING not modeled in density) Descriptor: E3 ubiquitin-protein ligase RNF168,Ubiquitin-conjugating enzyme E2 D3,Histone H2B type 2-E,Histone H2A type 1-B/E Authors: Hu, Q, Botuyan, M.V, Mer, G. Deposit date: 2023-10-23 Release date: 2024-01-17 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (3.562 Å) Cite: Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8UQD	Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 20-residue linker (condition 2. RING not modeled in density) Descriptor: E3 ubiquitin-protein ligase RNF168,Ubiquitin-conjugating enzyme E2 D3,Histone H2B type 2-E,Histone H2A type 1-B/E Authors: Hu, Q, Botuyan, M.V, Mer, G. Deposit date: 2023-10-23 Release date: 2024-01-17 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (3.893 Å) Cite: Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
2CEP	ROLE OF MET-230 IN INTRAMOLECULAR ELECTRON TRANSFER BETWEEN THE OXYFERRYL HEME AND TRP 191 IN CYTOCHROME C PEROXIDASE COMPOUND II Descriptor: CYTOCHROME C PEROXIDASE, PROTOPORPHYRIN IX CONTAINING FE Authors: Han, G.W, Miller, M.A, Kraut, J. Deposit date: 1994-05-31 Release date: 1994-08-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Role of methionine 230 in intramolecular electron transfer between the oxyferryl heme and tryptophan 191 in cytochrome c peroxidase compound II. Biochemistry, 33, 1994
1E0D	UDP-N-Acetylmuramoyl-L-Alanine:D-Glutamate Ligase Descriptor: SULFATE ION, UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE Authors: Fanchon, E, Bertrand, J, Chantalat, L, Dideberg, O. Deposit date: 2000-03-24 Release date: 2000-06-09 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.4 Å) Cite: "Open" Structures of Murd: Domain Movements and Structural Similarities with Folylpolyglutamate Synthetase. J.Mol.Biol., 301, 2000
2LT9	The solution structure of Ca2+ binding domain 2B of the third isoform of the Na+/Ca2+ exchanger Descriptor: Protein Slc8a3 Authors: Breukels, V, Touw, W.G, Vuister, G.W. Deposit date: 2012-05-15 Release date: 2012-08-01 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: NMR structure note: solution structure of Ca(2+) binding domain 2B of the third isoform of the Na(+)/Ca (2+) exchanger. J.Biomol.Nmr, 54, 2012
7ASQ	Orotidine 5'-monophosphate decarboxylase-domain of human UMPS in complex with the reaction product UMP at 0.95 Angstrom resolution Descriptor: GLYCEROL, SODIUM ION, SULFATE ION, ... Authors: Rindfleisch, S, Rabe von Pappenheim, F. Deposit date: 2020-10-28 Release date: 2021-11-24 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (0.95 Å) Cite: Ground-state destabilization by electrostatic repulsion is not a driving force in orotidine-5-monophosphate decarboxylase catalysis Nat Catal, 5, 2022
7AM9	OMPD-domain of human UMPS in complex with the substrate OMP at 0.99 Angstroms resolution Descriptor: GLYCEROL, OROTIDINE-5'-MONOPHOSPHATE, SULFATE ION, ... Authors: Tittmann, K, Rindfleisch, S, Krull, M. Deposit date: 2020-10-08 Release date: 2021-11-03 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (0.99 Å) Cite: Ground-state destabilization by electrostatic repulsion is not a driving force in orotidine-5-monophosphate decarboxylase catalysis Nat Catal, 5, 2022
7EDD	Crystal structure of a serine protease from Streptococcus pyogenes Descriptor: C5a peptidase, CALCIUM ION, CHLORIDE ION, ... Authors: Jobichen, C, Sivaraman, J. Deposit date: 2021-03-15 Release date: 2021-05-12 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.897 Å) Cite: The Autocatalytic Cleavage Domain Is Not Required for the Activity of ScpC, a Virulence Protease from Streptococcus pyogenes : A Structural Insight. Biochemistry, 60, 2021

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