Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6UAP
DownloadVisualize
BU of 6uap by Molmil
Crystal structure of tryptophan synthase from M. tuberculosis - open form with BRD6309 bound
Descriptor: (2R,3S,4R)-3-(4'-chloro-2',6'-difluoro[1,1'-biphenyl]-4-yl)-4-(fluoromethyl)azetidine-2-carbonitrile, 1,2-ETHANEDIOL, ACETATE ION, ...
Authors:Chang, C, Michalska, K, Maltseva, N.I, Jedrzejczak, R, McCarren, P, Nag, P.P, Joachimiak, A, Satchell, K, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-09-11
Release date:2019-10-30
Method:X-RAY DIFFRACTION (2.745 Å)
Cite:Crystal structure of tryptophan synthase from M. tuberculosis - open form with BRD6309 bound
To be Published
6HXX
DownloadVisualize
BU of 6hxx by Molmil
Potato virus Y
Descriptor: Coat protein, RNA (5'-R(P*UP*UP*UP*UP*U)-3')
Authors:Podobnik, M, Kezar, A, Novacek, J, Polak, M.
Deposit date:2018-10-18
Release date:2019-08-07
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for the multitasking nature of the potato virus Y coat protein.
Sci Adv, 5, 2019
4YM7
DownloadVisualize
BU of 4ym7 by Molmil
RNA polymerase I structure with an alternative dimer hinge
Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ...
Authors:Kostrewa, D, Kuhn, C.-D, Engel, C, Cramer, P.
Deposit date:2015-03-06
Release date:2015-09-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (5.5 Å)
Cite:An alternative RNA polymerase I structure reveals a dimer hinge.
Acta Crystallogr.,Sect.D, 71, 2015
6HV3
DownloadVisualize
BU of 6hv3 by Molmil
Yeast 20S proteasome with human beta2i (1-53)
Descriptor: CHLORIDE ION, MAGNESIUM ION, Probable proteasome subunit alpha type-7, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2018-10-10
Release date:2019-01-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
6HW6
DownloadVisualize
BU of 6hw6 by Molmil
Yeast 20S proteasome in complex with 20
Descriptor: MAGNESIUM ION, Probable proteasome subunit alpha type-7, Proteasome subunit alpha type-1, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2018-10-11
Release date:2019-01-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
6UCU
DownloadVisualize
BU of 6ucu by Molmil
Cryo-EM structure of the mitochondrial TOM complex from yeast (dimer)
Descriptor: DODECYL-BETA-D-MALTOSIDE, Mitochondrial import receptor subunit TOM22, Mitochondrial import receptor subunit TOM40, ...
Authors:Park, E, Tucker, K.
Deposit date:2019-09-17
Release date:2019-11-06
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Cryo-EM structure of the mitochondrial protein-import channel TOM complex at near-atomic resolution.
Nat.Struct.Mol.Biol., 26, 2019
6UDQ
DownloadVisualize
BU of 6udq by Molmil
Human IMPDH2 treated with ATP, IMP, and 20 mM GTP. Fully compressed filament end reconstruction.
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, INOSINIC ACID, ...
Authors:Johnson, M.C, Kollman, J.M.
Deposit date:2019-09-19
Release date:2020-03-25
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Cryo-EM structures demonstrate human IMPDH2 filament assembly tunes allosteric regulation.
Elife, 9, 2020
6HXJ
DownloadVisualize
BU of 6hxj by Molmil
Structure of ATP citrate lyase from Chlorobium limicola in complex with citrate and coenzyme A.
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ATP-citrate lyase alpha-subunit, ATP-citrate lyase beta-subunit, ...
Authors:Verstraete, K, Verschueren, K.
Deposit date:2018-10-17
Release date:2019-04-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Structure of ATP citrate lyase and the origin of citrate synthase in the Krebs cycle.
Nature, 568, 2019
4Y5X
DownloadVisualize
BU of 4y5x by Molmil
Diabody 305 complex with EpoR
Descriptor: CITRATE ANION, DI(HYDROXYETHYL)ETHER, Erythropoietin receptor, ...
Authors:Moraga, I, Guo, F, Ozkan, E, Jude, K.M, Garcia, K.C.
Deposit date:2015-02-12
Release date:2015-03-18
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Tuning Cytokine Receptor Signaling by Re-orienting Dimer Geometry with Surrogate Ligands.
Cell, 160, 2015
6TVD
DownloadVisualize
BU of 6tvd by Molmil
Crystal structure of the haemagglutinin from a H10N7 seal influenza virus isolated in Germany in complex with avian receptor analogue, 3'-SLN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Zhang, J, Xiong, X, Purkiss, A, Walker, P, Gamblin, S, Skehel, J.J.
Deposit date:2020-01-09
Release date:2020-10-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Hemagglutinin Traits Determine Transmission of Avian A/H10N7 Influenza Virus between Mammals.
Cell Host Microbe, 28, 2020
4Y5Z
DownloadVisualize
BU of 4y5z by Molmil
T=1 capsid structure of SeMV Ndel65CP fused with B-domain of S. aureus protein SpA at the N-terminus (P1 crystal form)
Descriptor: Immunoglobulin G-binding protein A,Coat protein, SULFATE ION
Authors:Gulati, A, Murthy, M.R.N.
Deposit date:2015-02-12
Release date:2016-01-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural studies on chimeric Sesbania mosaic virus coat protein: Revisiting SeMV assembly.
Virology, 489, 2015
4Y82
DownloadVisualize
BU of 4y82 by Molmil
Yeast 20S proteasome in complex with Ac-LAY-ep
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Ac-LAY-ep, CHLORIDE ION, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2015-02-16
Release date:2015-06-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Systematic Analyses of Substrate Preferences of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors.
J.Am.Chem.Soc., 137, 2015
4Y8S
DownloadVisualize
BU of 4y8s by Molmil
Yeast 20S proteasome beta2-H116D mutant in complex with Ac-LAE-ep
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Ac-LAE-ep, MAGNESIUM ION, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2015-02-16
Release date:2015-06-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Systematic Analyses of Substrate Preferences of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors.
J.Am.Chem.Soc., 137, 2015
5TVP
DownloadVisualize
BU of 5tvp by Molmil
SUMO2 bound to Mouse Tdp2 catalytic domain with a 5'-phosphorylated DNA ternary complex
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DNA (5'-D(P*CP*CP*GP*AP*AP*TP*TP*CP*G)-3'), ...
Authors:Schellenberg, M.J, Williams, R.S.
Deposit date:2016-11-09
Release date:2017-10-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:ZATT (ZNF451)-mediated resolution of topoisomerase 2 DNA-protein cross-links.
Science, 357, 2017
4Y8I
DownloadVisualize
BU of 4y8i by Molmil
Yeast 20S proteasome in complex with Ac-PLL-ep
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Ac-PLL-ep, CHLORIDE ION, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2015-02-16
Release date:2015-06-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Systematic Analyses of Substrate Preferences of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors.
J.Am.Chem.Soc., 137, 2015
4Y8R
DownloadVisualize
BU of 4y8r by Molmil
Yeast 20S proteasome beta2-H116D mutant
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2015-02-16
Release date:2015-06-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Systematic Analyses of Substrate Preferences of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors.
J.Am.Chem.Soc., 137, 2015
4YA9
DownloadVisualize
BU of 4ya9 by Molmil
Yeast 20S proteasome beta2-H114D mutant in complex with Ac-LAD-ep
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Ac-LAD-ep, CHLORIDE ION, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2015-02-17
Release date:2015-06-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Systematic Analyses of Substrate Preferences of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors.
J.Am.Chem.Soc., 137, 2015
6HCP
DownloadVisualize
BU of 6hcp by Molmil
Crystal structure of BauA, the Ferric preacinetobactin receptor from Acinetobacter baumannii
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 1,2-ETHANEDIOL, BauA, ...
Authors:Moynie, L, Naismith, J.H.
Deposit date:2018-08-16
Release date:2018-10-10
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Preacinetobactin not acinetobactin is essential for iron uptake by the BauA transporter of the pathogenAcinetobacter baumannii.
Elife, 7, 2018
4YBB
DownloadVisualize
BU of 4ybb by Molmil
High-resolution structure of the Escherichia coli ribosome
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ...
Authors:Noeske, J, Wasserman, M.R, Terry, D.S, Altman, R.B, Blanchard, S.C, Cate, J.H.D.
Deposit date:2015-02-18
Release date:2015-03-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:High-resolution structure of the Escherichia coli ribosome.
Nat.Struct.Mol.Biol., 22, 2015
6HBY
DownloadVisualize
BU of 6hby by Molmil
HLA class II peptide flanking residues tune the immunogenicity of a human tumor-derived epitope
Descriptor: 1,2-ETHANEDIOL, ARRPPLAELAALNLSGSRL 5T4 tumour epitope, HLA class II histocompatibility antigen, ...
Authors:MacLachlan, B, Rizkallah, P.J, Sewell, A.K, Cole, D.K, Godkin, A.J.
Deposit date:2018-08-13
Release date:2019-08-14
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Human leukocyte antigen (HLA) class II peptide flanking residues tune the immunogenicity of a human tumor-derived epitope.
J.Biol.Chem., 294, 2019
6H77
DownloadVisualize
BU of 6h77 by Molmil
E1 enzyme for ubiquitin like protein activation in complex with UBL
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
Authors:Soudah, N, Padala, P, Hassouna, F, Mashahreh, B, Lebedev, A.A, Isupov, M.N, Cohen-Kfir, E, Wiener, R.
Deposit date:2018-07-30
Release date:2018-10-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An N-Terminal Extension to UBA5 Adenylation Domain Boosts UFM1 Activation: Isoform-Specific Differences in Ubiquitin-like Protein Activation.
J.Mol.Biol., 431, 2019
6GYM
DownloadVisualize
BU of 6gym by Molmil
Structure of a yeast closed complex with distorted DNA (CCdist)
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Dienemann, C, Schwalb, B, Schilbach, S, Cramer, P.
Deposit date:2018-06-30
Release date:2018-12-05
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (6.7 Å)
Cite:Promoter Distortion and Opening in the RNA Polymerase II Cleft.
Mol. Cell, 73, 2019
4YPB
DownloadVisualize
BU of 4ypb by Molmil
Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Schureck, M.A, Dunkle, J.A, Maehigashi, T, Dunham, C.M.
Deposit date:2015-03-12
Release date:2015-10-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Defining the mRNA recognition signature of a bacterial toxin protein.
Proc.Natl.Acad.Sci.USA, 112, 2015
6H12
DownloadVisualize
BU of 6h12 by Molmil
Crystal structure of TcACHE complexed to 1-(6-Oxo-1,2,3,4,6,10b-hexahydropyrido[2,1-a]isoindol-10-yl)-3-(4-(((1-(2-((1,2,3,4-tetrahydroacridin-9-yl)amino)ethyl)-1H-1,2,3-triazol-4-yl)methoxy)methyl)pyridin-2-yl)urea
Descriptor: 1,2-ETHANEDIOL, 1-[4-[[1-[2-(1,2,3,4,4~{a},9~{a}-hexahydroacridin-9-ylamino)ethyl]-1,2,3-triazol-4-yl]methoxymethyl]pyridin-2-yl]-3-[(10~{b}~{R})-6-oxidanylidene-2,3,4,10~{b}-tetrahydro-1~{H}-pyrido[2,1-a]isoindol-10-yl]urea, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ...
Authors:Coquelle, N, Colletier, J.P.
Deposit date:2018-07-10
Release date:2019-05-15
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Design, biological evaluation and X-ray crystallography of nanomolar multifunctional ligands targeting simultaneously acetylcholinesterase and glycogen synthase kinase-3.
Eur.J.Med.Chem., 168, 2019
7UIT
DownloadVisualize
BU of 7uit by Molmil
Cryo-EM of pH-controlled and self-assembled fibers, peptide 2
Descriptor: Peptide 2
Authors:Wang, F, Grosvirt-Dramen, A, Hochbaum, A.I, Egelman, E.H.
Deposit date:2022-03-29
Release date:2023-04-12
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM of pH-controlled and self-assembled fibers, peptide 2
To Be Published

224201

PDB entries from 2024-08-28

PDB statisticsPDBj update infoContact PDBjnumon