PDB: 7386 resultsInfo pagesStatus searchChemie searchBIRD

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2MMP	Solution structure of a ribosomal protein Descriptor: Uncharacterized protein Authors: Feng, Y. Deposit date: 2014-03-17 Release date: 2014-06-11 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure determination of archaea-specific ribosomal protein L46a reveals a novel protein fold. Biochem.Biophys.Res.Commun., 450, 2014
1I3Y	SOLUTION STRUCTURE OF THE A LOOP OF 23S RIBOSOMAL RNA. Descriptor: 5'-R(*GP*GP*CP*UP*GP*GP*CP*(OMU)P*GP*UP*UP*CP*GP*CP*CP*AP*GP*CP*C)-3' Authors: Puglisi, J.D, Blanchard, S.C. Deposit date: 2001-02-17 Release date: 2001-04-04 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the A loop of 23S ribosomal RNA. Proc.Natl.Acad.Sci.USA, 98, 2001
2MER	Structure of helix 69 from escherichia coli 23s ribosomal rna Descriptor: RNA_(5'-R(P*GP*GP*CP*CP*GP*(PSU)P*AP*AP*CP*(PSU)P*AP*(PSU)P*AP*AP*CP*GP*GP*UP*C)-3') Authors: Jiang, J, Aduri, R, Chow, C.S, Santalucia, J. Deposit date: 2013-09-26 Release date: 2014-01-01 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structure modulation of helix 69 from Escherichia coli 23S ribosomal RNA by pseudouridylations. Nucleic Acids Res., 42, 2014
2MEQ	Structure of Helix 69 from Escherichia coli 23S Ribosomal RNA Descriptor: RNA_(5'-R(P*GP*GP*CP*CP*GP*UP*AP*AP*CP*UP*AP*UP*AP*AP*CP*GP*GP*UP*C)-3') Authors: Jiang, J, Aduri, R, Chow, C.S, Santalucia, J. Deposit date: 2013-09-26 Release date: 2014-01-01 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure modulation of helix 69 from Escherichia coli 23S ribosomal RNA by pseudouridylations. Nucleic Acids Res., 42, 2014
3UZU	The structure of the Ribosomal RNA small subunit methyltransferase A from Burkholderia pseudomallei Descriptor: 1,2-ETHANEDIOL, Ribosomal RNA small subunit methyltransferase A Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2011-12-07 Release date: 2011-12-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.75 Å) Cite: The structure of the Ribosomal RNA small subunit methyltransferase A from Burkholderia pseudomallei TO BE PUBLISHED
4P20	Crystal structures of the bacterial ribosomal decoding site complexed with amikacin Descriptor: (2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6-(aminomethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5-azanyl-2-[(2S,3R,4S,5S ,6R)-4-azanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxidanyl-butanamide, 5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' Authors: Kondo, J, Francois, B, Russell, R.J.M, Murray, J.B, Westhof, E. Deposit date: 2014-02-28 Release date: 2014-05-07 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structure of the bacterial ribosomal decoding site complexed with amikacin containing the gamma-amino-alpha-hydroxybutyryl (haba) group. Biochimie, 88, 2006
8YEQ	Crystal structure of L7/L12 Ribosomal Protein from Mycobacterium tuberculosis Descriptor: 1,2-ETHANEDIOL, Large ribosomal subunit protein bL12 Authors: Panicker, L, Tripathi, P. Deposit date: 2024-02-23 Release date: 2024-09-04 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Crystal Structure of L7 Ribosomal Protein from Mycobacterium tuberculosis To Be Published
2H49	The NMR Structure of an Internal Loop from 23S Ribosomal RNA of Deinococcus radiodurans Differs from the Structure in the Crystal of the Ribosomal Subunit Descriptor: 5'-R(*GP*GP*CP*UP*AP*AP*GP*AP*C)-3', 5'-R(*GP*UP*CP*GP*AP*AP*GP*CP*C)-3' Authors: Shankar, N. Deposit date: 2006-05-23 Release date: 2006-11-21 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: The NMR structure of an internal loop from 23S ribosomal RNA differs from its structure in crystals of 50s ribosomal subunits. Biochemistry, 45, 2006
3UBD	Structure of N-terminal domain of RSK2 kinase in complex with flavonoid glycoside SL0101 Descriptor: 5,7-dihydroxy-2-(4-hydroxyphenyl)-4-oxo-4H-chromen-3-yl 3,4-di-O-acetyl-6-deoxy-alpha-L-mannopyranoside, Ribosomal protein S6 kinase alpha-3 Authors: Utepbergenov, D, Derewenda, U, Derewenda, Z.S. Deposit date: 2011-10-24 Release date: 2012-09-05 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.53 Å) Cite: Insights into the Inhibition of the p90 Ribosomal S6 Kinase (RSK) by the Flavonol Glycoside SL0101 from the 1.5 A Crystal Structure of the N-Terminal Domain of RSK2 with Bound Inhibitor. Biochemistry, 51, 2012
3E7W	Crystal structure of DLTA: Implications for the reaction mechanism of non-ribosomal peptide synthetase (NRPS) adenylation domains Descriptor: ADENOSINE MONOPHOSPHATE, D-alanine--poly(phosphoribitol) ligase subunit 1, PHOSPHATE ION Authors: Yonus, H, Neumann, P, Zimmermann, S, May, J.J, Marahiel, M.A, Stubbs, M.T. Deposit date: 2008-08-19 Release date: 2008-09-09 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.28 Å) Cite: Crystal structure of DltA. Implications for the reaction mechanism of non-ribosomal peptide synthetase adenylation domains J.Biol.Chem., 283, 2008
3E7X	Crystal structure of DLTA: implications for the reaction mechanism of non-ribosomal peptide synthetase (NRPS) adenylation domains Descriptor: ADENOSINE MONOPHOSPHATE, D-alanine--poly(phosphoribitol) ligase subunit 1 Authors: Yonus, H, Neumann, P, Zimmermann, S, May, J.J, Marahiel, M.A, Stubbs, M.T. Deposit date: 2008-08-19 Release date: 2008-09-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structure of DltA. Implications for the reaction mechanism of non-ribosomal peptide synthetase adenylation domains J.Biol.Chem., 283, 2008
3GRZ	CRYSTAL STRUCTURE OF ribosomal protein L11 methylase FROM Lactobacillus delbrueckii subsp. bulgaricus Descriptor: GLYCEROL, Ribosomal protein L11 methyltransferase Authors: Patskovsky, Y, Ramagopal, U.A, Toro, R, Morano, C, Freeman, J, Chang, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) Deposit date: 2009-03-26 Release date: 2009-04-07 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2 Å) Cite: CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN 11 METHYLASE FROM Lactobacillus delbrueckii subsp. bulgaricus To be Published
2FQN	Crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site Descriptor: 5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3', COBALT HEXAMMINE(III), MAGNESIUM ION Authors: Kondo, J, Urzhumtsev, A, Westhof, E. Deposit date: 2006-01-18 Release date: 2006-02-14 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Two conformational states in the crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site. Nucleic Acids Res., 34, 2006
5XQ5	NMR structure of the domain 5 of the E. coli ribosomal protein S1 Descriptor: 30S ribosomal protein S1 Authors: Lu, Y, Lim, L.Z, Song, J. Deposit date: 2017-06-06 Release date: 2018-06-06 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: NMR structure of the domain 5 of the E. coli ribosomal protein S1 To Be Published
2WNT	Crystal Structure of the Human Ribosomal protein S6 kinase Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, RIBOSOMAL PROTEIN S6 KINASE, ... Authors: Muniz, J.R.C, Elkins, J.M, Wang, J, Ugochukwu, E, Salah, E, King, O, Picaud, S, von Delft, F, Bountra, C, Arrowsmith, C.H, Weigelt, J, Edwards, A, Knapp, S. Deposit date: 2009-07-20 Release date: 2009-08-25 Last modified: 2018-01-24 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal Structure of the Human Ribosomal Protein S6 Kinase To be Published
5YH1	Member of s1p family of ribosomal proteins PF0399 DHH domain Descriptor: GLYCEROL, MANGANESE (II) ION, Member of s1p family of ribosomal proteins Authors: Song, Y, Liu, X.P. Deposit date: 2017-09-27 Release date: 2018-08-01 Method: X-RAY DIFFRACTION (2.18 Å) Cite: Member of s1p family of ribosomal proteins PF0399 DHH domain To Be Published
1UWV	Crystal Structure of RumA, the iron-sulfur cluster containing E. coli 23S Ribosomal RNA 5-Methyluridine Methyltransferase Descriptor: 23S RRNA (URACIL-5-)-METHYLTRANSFERASE RUMA, CHLORIDE ION, IRON/SULFUR CLUSTER, ... Authors: Lee, T.T, Agarwalla, S, Stroud, R.M. Deposit date: 2004-02-11 Release date: 2004-03-18 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Crystal Structure of Ruma, an Iron-Sulfur Cluster Containing E. Coli Ribosomal RNA 5-Methyluridine Methyltransferase. Structure, 12, 2004
3A62	Crystal structure of phosphorylated p70S6K1 Descriptor: MANGANESE (II) ION, Ribosomal protein S6 kinase beta-1, STAUROSPORINE Authors: Sunami, T, Byrne, N, Diehl, R.E, Funabashi, K, Hall, D.L, Ikuta, M, Patel, S.B, Shipman, J.M, Smith, R.F, Takahashi, I, Zugay-Murphy, J, Iwasawa, Y, Lumb, K.J, Munshi, S.K, Sharma, S. Deposit date: 2009-08-18 Release date: 2009-10-27 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structural basis of human p70 ribosomal S6 kinase-1 regulation by activation loop phosphorylation. J.Biol.Chem., 285, 2010
2OE8	1.8 A X-ray crystal structure of Apramycin complex with RNA fragment GGGCGUCGCUAGUACC/CGGUACUAAAAGUCGCC containing the human ribosomal decoding A site: RNA construct with 5'-overhang Descriptor: APRAMYCIN, RNA (5'-R(*CP*GP*GP*UP*AP*CP*UP*AP*AP*AP*AP*GP*UP*CP*GP*CP*C)-3'), RNA (5'-R(*GP*GP*GP*CP*GP*UP*CP*GP*CP*UP*AP*GP*UP*AP*CP*C)-3') Authors: Hermann, T, Tereshko, V, Skripkin, E, Patel, D.J. Deposit date: 2006-12-28 Release date: 2007-02-13 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Apramycin recognition by the human ribosomal decoding site. Blood Cells Mol.Dis., 38, 2007
2OE5	1.5 A X-ray crystal structure of Apramycin complex with RNA fragment GGCGUCGCUAGUACCG/GGUACUAAAAGUCGCCC containing the human ribosomal decoding A site: RNA construct with 3'-overhang Descriptor: APRAMYCIN, MAGNESIUM ION, RNA (5'-R(*GP*GP*CP*GP*UP*CP*GP*CP*UP*AP*GP*UP*AP*CP*CP*G)-3'), ... Authors: Hermann, T, Tereshko, V, Skripkin, E, Patel, D.J. Deposit date: 2006-12-28 Release date: 2007-02-13 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.51 Å) Cite: Apramycin recognition by the human ribosomal decoding site. Blood Cells Mol.Dis., 38, 2007
4NUS	Rsk2 N-terminal kinase in complex with LJH685 Descriptor: 2,6-difluoro-4-{4-[4-(4-methylpiperazin-1-yl)phenyl]pyridin-3-yl}phenol, Ribosomal protein S6 kinase alpha-3 Authors: Appleton, B.A. Deposit date: 2013-12-04 Release date: 2014-03-05 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Novel potent and selective inhibitors of p90 ribosomal S6 kinase reveal the heterogeneity of RSK function in MAPK-driven cancers. Mol Cancer Res, 12, 2014
2OE6	2.4A X-ray crystal structure of unliganded RNA fragment GGGCGUCGCUAGUACC/CGGUACUAAAAGUCGCC containing the human ribosomal decoding A site: RNA construct with 5'-overhang Descriptor: RNA (5'-R(*CP*GP*GP*UP*AP*CP*UP*AP*AP*AP*AP*GP*UP*CP*GP*CP*C)-3'), RNA (5'-R(*GP*GP*GP*CP*GP*UP*CP*GP*CP*UP*AP*GP*UP*AP*CP*C)-3') Authors: Hermann, T, Tereshko, V, Skripkin, E, Patel, D.J. Deposit date: 2006-12-28 Release date: 2007-02-13 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Apramycin recognition by the human ribosomal decoding site. Blood Cells Mol.Dis., 38, 2007
8EQ5	Crystal structure of the N-terminal kinase domain of RSK2 in complex with SPRED2 (131-160) Descriptor: 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4-oxo-4H-chromen-3-yl 6-deoxy-alpha-L-mannopyranoside, Ribosomal protein S6 kinase alpha-3, Sprouty-related, ... Authors: Bonsor, D.A, Lopez, J, McCormick, F, Simanshu, D.K. Deposit date: 2022-10-07 Release date: 2023-04-26 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: The ribosomal S6 kinase 2 (RSK2)-SPRED2 complex regulates the phosphorylation of RSK substrates and MAPK signaling. J.Biol.Chem., 299, 2023
4EL9	Structure of N-terminal kinase domain of RSK2 with afzelin Descriptor: 5,7-dihydroxy-2-(4-hydroxyphenyl)-4-oxo-4H-chromen-3-yl 6-deoxy-alpha-L-mannopyranoside, Ribosomal protein S6 kinase alpha-3 Authors: Utepbergenov, D, Derewenda, U, Derewenda, Z.S. Deposit date: 2012-04-10 Release date: 2012-09-05 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Insights into the Inhibition of the p90 Ribosomal S6 Kinase (RSK) by the Flavonol Glycoside SL0101 from the 1.5 A Crystal Structure of the N-Terminal Domain of RSK2 with Bound Inhibitor. Biochemistry, 51, 2012
2BH2	Crystal Structure of E. coli 5-methyluridine methyltransferase RumA in complex with ribosomal RNA substrate and S-adenosylhomocysteine. Descriptor: 23S RIBOSOMAL RNA 1932-1968, 23S RRNA (URACIL-5-)-METHYLTRANSFERASE RUMA, IRON/SULFUR CLUSTER, ... Authors: Lee, T.T, Agarwalla, S, Stroud, R.M. Deposit date: 2005-01-06 Release date: 2005-03-30 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.15 Å) Cite: A Unique RNA Fold in the Ruma-RNA-Cofactor Ternary Complex Contributes to Substrate Selectivity and Enzymatic Function Cell(Cambridge,Mass.), 120, 2005

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