PDB: 73501 resultsInfo pagesStatus searchChemie searchBIRD

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7ZJ4	Ligand bound state of a brocolli-pepper aptamer FRET tile Descriptor: 4-(3,5-difluoro-4-hydroxybenzyl)-1,2-dimethyl-1H-imidazol-5-ol, 4-[(~{Z})-1-cyano-2-[5-[2-hydroxyethyl(methyl)amino]thieno[3,2-b]thiophen-2-yl]ethenyl]benzenecarbonitrile, POTASSIUM ION, ... Authors: McRae, E.K.S, Vallina, N.S, Hansen, B.K, Boussebayle, A, Andersen, E.S. Deposit date: 2022-04-08 Release date: 2023-04-19 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (4.43 Å) Cite: Structure determination of Pepper-Broccoli FRET pair by RNA origami scaffolding To Be Published
4D61	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state Descriptor: 18S RRNA, 40S RIBOSOMAL PROTEIN S10, 40S RIBOSOMAL PROTEIN S11, ... Authors: Muhs, M, Hilal, T, Mielke, T, Skabkin, M.A, Sanbonmatsu, K.Y, Pestova, T.V, Spahn, C.M.T. Deposit date: 2014-11-07 Release date: 2015-03-04 Last modified: 2017-08-30 Method: ELECTRON MICROSCOPY (9 Å) Cite: Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires. Mol.Cell, 57, 2015
8P4C	Structural insights into human co-transcriptional capping - structure 3 Descriptor: DNA (32-MER), DNA (41-MER), DNA-directed RNA polymerase II subunit E, ... Authors: Garg, G, Dienemann, C, Farnung, L, Schwarz, J, Linden, A, Urlaub, H, Cramer, P. Deposit date: 2023-05-20 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structural insights into human co-transcriptional capping. Mol.Cell, 83, 2023
8P4D	Structural insights into human co-transcriptional capping - structure 4 Descriptor: DNA (32-MER), DNA (41-MER), DNA-directed RNA polymerase II subunit E, ... Authors: Garg, G, Dienemann, C, Farnung, L, Schwarz, J, Linden, A, Urlaub, H, Cramer, P. Deposit date: 2023-05-20 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structural insights into human co-transcriptional capping. Mol.Cell, 83, 2023
7MPJ	Stm1 bound vacant 80S structure isolated from wild-type Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... Authors: Rai, J, Zhao, Y, Li, H. Deposit date: 2021-05-04 Release date: 2022-05-11 Last modified: 2023-12-13 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: CryoEM structures of pseudouridine-free ribosome suggest impacts of chemical modifications on ribosome conformations. Structure, 30, 2022
7MPI	Stm1 bound vacant 80S structure isolated from cbf5-D95A Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... Authors: Rai, J, Zhao, Y, Li, H. Deposit date: 2021-05-04 Release date: 2022-05-11 Last modified: 2022-07-20 Method: ELECTRON MICROSCOPY (3.05 Å) Cite: CryoEM structures of pseudouridine-free ribosome suggest impacts of chemical modifications on ribosome conformations. Structure, 30, 2022
7R6Q	State E2 nucleolar 60S ribosome biogenesis intermediate - Foot region model Descriptor: 25S rRNA, 5.8S rRNA, 60S ribosomal protein L13-A, ... Authors: Cruz, V.E, Sekulski, K, Peddada, N, Erzberger, J.P. Deposit date: 2021-06-23 Release date: 2022-11-09 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.98 Å) Cite: Sequence-specific remodeling of a topologically complex RNP substrate by Spb4. Nat.Struct.Mol.Biol., 29, 2022
8P18	E167K RF2 on E. coli 70S release complex with UGG (Structure III) Descriptor: 1,4-DIAMINOBUTANE, 16S rRNA, 23S rRNA, ... Authors: Pundir, S, Larsson, D.S.D, Selmer, M, Sanyal, S. Deposit date: 2023-05-11 Release date: 2024-05-22 Method: ELECTRON MICROSCOPY (2.77 Å) Cite: The compensatory mechanism of a naturally evolved E167K RF2 counteracting the loss of RF1 in bacteria To Be Published
8P16	E167K RF2 on E. coli 70S release complex with UGG (Structure I) Descriptor: 1,4-DIAMINOBUTANE, 16S rRNA, 23S rRNA, ... Authors: Pundir, S, Larsson, D.S.D, Selmer, M, Sanyal, S. Deposit date: 2023-05-11 Release date: 2024-05-22 Method: ELECTRON MICROSCOPY (2.77 Å) Cite: The compensatory mechanism of a naturally evolved E167K RF2 counteracting the loss of RF1 in bacteria To Be Published
7ENA	TFIID-based PIC-Mediator holo-complex in pre-assembled state (pre-hPIC-MED) Descriptor: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ... Authors: Chen, X, Qi, Y, Wang, X, Wu, Z, Yin, X, Li, J, Liu, W, Xu, Y. Deposit date: 2021-04-16 Release date: 2021-05-26 Last modified: 2021-06-16 Method: ELECTRON MICROSCOPY (4.07 Å) Cite: Structures of the human Mediator and Mediator-bound preinitiation complex. Science, 372, 2021
7ENC	TFIID-based PIC-Mediator holo-complex in fully-assembled state (hPIC-MED) Descriptor: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ... Authors: Chen, X, Qi, Y, Wang, X, Wu, Z, Yin, X, Li, J, Liu, W, Xu, Y. Deposit date: 2021-04-16 Release date: 2021-05-26 Last modified: 2021-06-16 Method: ELECTRON MICROSCOPY (4.13 Å) Cite: Structures of the human Mediator and Mediator-bound preinitiation complex. Science, 372, 2021
7Q3L	Human 17S U2 snRNP 5' domain Descriptor: HIV Tat-specific factor 1, PHD finger-like domain-containing protein 5A, Probable ATP-dependent RNA helicase DDX46, ... Authors: Tholen, J, Galej, W.P. Deposit date: 2021-10-28 Release date: 2022-03-30 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (2.21 Å) Cite: Structural basis of branch site recognition by the human spliceosome. Science, 375, 2022
2RS8	Solution structure of the N-terminal RNA recognition motif of NonO Descriptor: Non-POU domain-containing octamer-binding protein Authors: Nagata, T, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2011-11-29 Release date: 2012-12-19 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution structure of the N-terminal RNA recognition motif of NonO To be Published
4ULW	Crystal structure of the ROQ-domain of human ROQUIN1 Descriptor: ROQUIN-1 Authors: Schuetz, A, Heinemann, U. Deposit date: 2014-05-14 Release date: 2015-01-14 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.91 Å) Cite: Roquin Binding to Target Mrnas Involves a Winged Helix-Turn- Helix Motif. Nat.Commun., 5, 2014
7Q4O	Substrate-bound A-like U2 snRNP Descriptor: BPS oligo, PHD finger-like domain-containing protein 5A, Splicing factor 3A subunit 2, ... Authors: Tholen, J, Galej, W.P. Deposit date: 2021-11-01 Release date: 2022-03-30 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (2.1 Å) Cite: Structural basis of branch site recognition by the human spliceosome. Science, 375, 2022
8P8N	Mouse RPL39 integrated into the yeast 60S ribosomal subunit Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Rabl, J, Banerjee, A, Boehringer, D, Zavolan, M. Deposit date: 2023-06-02 Release date: 2024-06-12 Method: ELECTRON MICROSCOPY (2.15 Å) Cite: Yeast 60S ribosomal subunit, RPL39 deletion To Be Published
5JCS	CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE Descriptor: 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... Authors: Barrio-Garcia, C, Thoms, M, Flemming, D, Kater, L, Berninghausen, O, Bassler, J, Beckmann, R, Hurt, E. Deposit date: 2016-04-15 Release date: 2016-11-16 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (9.5 Å) Cite: Architecture of the Rix1-Rea1 checkpoint machinery during pre-60S-ribosome remodeling Nat.Struct.Mol.Biol., 23, 2016
8P8U	Yeast 60S ribosomal subunit Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Rabl, J, Banerjee, A, Boehringer, D, Zavolan, M. Deposit date: 2023-06-02 Release date: 2024-06-12 Method: ELECTRON MICROSCOPY (2.23 Å) Cite: Yeast 60S ribosomal subunit To Be Published
7Q4P	U2 snRNP after ATP-dependent remodelling Descriptor: PHD finger-like domain-containing protein 5A, Splicing factor 3A subunit 2, Splicing factor 3A subunit 3, ... Authors: Tholen, J, Galej, W.P. Deposit date: 2021-11-01 Release date: 2022-03-30 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (2.15 Å) Cite: Structural basis of branch site recognition by the human spliceosome. Science, 375, 2022
8OO0	Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S0, ... Authors: Klein, M.A, Wild, K, Kisonaite, M, Sinning, I. Deposit date: 2023-04-04 Release date: 2024-02-21 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Methionine aminopeptidase 2 and its autoproteolysis product have different binding sites on the ribosome. Nat Commun, 15, 2024
6C4I	Conformation of methylated GGQ in the peptidyl transferase center during translation termination Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Zeng, F, Jin, H. Deposit date: 2018-01-12 Release date: 2018-02-21 Last modified: 2020-01-08 Method: ELECTRON MICROSCOPY (3.24 Å) Cite: Conformation of methylated GGQ in the Peptidyl Transferase Center during Translation Termination. Sci Rep, 8, 2018
7ZJ5	Unbound state of a brocolli-pepper aptamer FRET tile. Descriptor: POTASSIUM ION, brocolli-pepper aptamer Authors: McRae, E.K.S, Vallina, N.S, Hansen, B.K, Boussebayle, A, Andersen, E.S. Deposit date: 2022-04-08 Release date: 2023-04-19 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (4.55 Å) Cite: Structure determination of Pepper-Broccoli FRET pair by RNA origami scaffolding To Be Published
8T4S	MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit Descriptor: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... Authors: Devarkar, S.C, Xiong, Y. Deposit date: 2023-06-09 Release date: 2023-10-04 Last modified: 2023-10-11 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Structural basis for translation inhibition by MERS-CoV Nsp1 reveals a conserved mechanism for betacoronaviruses. Cell Rep, 42, 2023
7ONB	Structure of the U2 5' module of the A3'-SSA complex Descriptor: MINX, PHD finger-like domain-containing protein 5A, RNU2, ... Authors: Cretu, C, Pena, V. Deposit date: 2021-05-25 Release date: 2021-08-04 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis of intron selection by U2 snRNP in the presence of covalent inhibitors. Nat Commun, 12, 2021
5IMR	Structure of ribosome bound to cofactor at 5.7 angstrom resolution Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Kumar, V, Ero, R, Jian, G.K, Ahmed, T, Zhan, Y, Bhushan, S, Gao, Y.G. Deposit date: 2016-03-06 Release date: 2016-05-18 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (5.7 Å) Cite: Structure of the GTP Form of Elongation Factor 4 (EF4) Bound to the Ribosome J.Biol.Chem., 291, 2016

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