Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5MHV
DownloadVisualize
BU of 5mhv by Molmil
The study of the X-ray induced enzymatic reduction of molecular oxygen to water for laccase from Steccherinum murashkinskyi.The fourth structure of the series with total exposition time 93 min.
Descriptor: CITRIC ACID, COPPER (II) ION, Laccase 2, ...
Authors:Polyakov, K.M, Gavryushov, S, Fedorova, T.V, Glazunova, O.A, Popov, A.N.
Deposit date:2016-11-25
Release date:2017-05-10
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural study of the X-ray-induced enzymatic reduction of molecular oxygen to water by Steccherinum murashkinskyi laccase: insights into the reaction mechanism.
Acta Crystallogr D Struct Biol, 73, 2017
5MI2
DownloadVisualize
BU of 5mi2 by Molmil
The study of the X-ray induced enzymatic reduction of molecular oxygen to water for laccase from Steccherinum murashkinskyi.The 10-th structure of the series with total exposition time 273 min.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CITRIC ACID, COPPER (II) ION, ...
Authors:Polyakov, K.M, Gavryushov, S, Fedorova, T.V, Glazunova, O.A, Popov, A.N.
Deposit date:2016-11-27
Release date:2017-05-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural study of the X-ray-induced enzymatic reduction of molecular oxygen to water by Steccherinum murashkinskyi laccase: insights into the reaction mechanism.
Acta Crystallogr D Struct Biol, 73, 2017
5MIC
DownloadVisualize
BU of 5mic by Molmil
The study of the X-ray induced enzymatic reduction of molecular oxygen to water for laccase from Steccherinum murashkinskyi.The 13-th structure of the series with total exposition time 363 min.
Descriptor: CITRIC ACID, COPPER (II) ION, Laccase 2, ...
Authors:Polyakov, K.M, Gavryushov, S, Fedorova, T.V, Glazunova, O.A, Popov, A.N.
Deposit date:2016-11-28
Release date:2017-05-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural study of the X-ray-induced enzymatic reduction of molecular oxygen to water by Steccherinum murashkinskyi laccase: insights into the reaction mechanism.
Acta Crystallogr D Struct Biol, 73, 2017
8TON
DownloadVisualize
BU of 8ton by Molmil
Crystal Structure of Engineered Mouse Protocadherin-15 EC3-EC7 Connection
Descriptor: CALCIUM ION, POTASSIUM ION, Protocadherin-15 EC3-EC7, ...
Authors:De-la-Torre, P, Brower, J, Indzhykulian, A.
Deposit date:2023-08-03
Release date:2024-08-14
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal Structure of Engineered Mouse Protocadherin-15 EC3-EC7 Connection
To Be Published
3AJN
DownloadVisualize
BU of 3ajn by Molmil
Structural basis of glycine amide on suppression of protein aggregation by high resolution X-ray analysis
Descriptor: AMINOMETHYLAMIDE, CHLORIDE ION, Lysozyme C, ...
Authors:Ito, L, Shiraki, K, Hasegawa, K, Kumasaka, T.
Deposit date:2010-06-09
Release date:2011-02-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Glycine amide shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation
Febs Lett., 585, 2011
5GLO
DownloadVisualize
BU of 5glo by Molmil
Crystal structure of CoXyl43, GH43 beta-xylosidase/alpha-arabinofuranosidase from a compostmicrobial metagenome in complex with l-arabinose, calcium-free form
Descriptor: ACETATE ION, Glycoside hydrolase family 43, SODIUM ION, ...
Authors:Matsuzawa, T, Kishine, N, Fujimoto, Z, Yaoi, K.
Deposit date:2016-07-12
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of metagenomic beta-xylosidase/ alpha-l-arabinofuranosidase activated by calcium.
J. Biochem., 162, 2017
8U07
DownloadVisualize
BU of 8u07 by Molmil
Imine reductase RedE bound with NADP+ and arcyriaflavin A (secondary site)
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Arcyriaflavin A, ...
Authors:Daniel-Ivad, P, Ryan, K.S.
Deposit date:2023-08-28
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:An imine reductase that captures reactive intermediates in the biosynthesis of the indolocarbazole reductasporine
To be published
8U2A
DownloadVisualize
BU of 8u2a by Molmil
Crystal structure of NanI in complex with Neu5,9Ac
Descriptor: 1,2-ETHANEDIOL, 9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid, Exo-alpha-sialidase, ...
Authors:Medley, B.J, Boraston, A.B.
Deposit date:2023-09-05
Release date:2024-09-04
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:A "terminal" case of glycan catabolism: structural and enzymatic characterization of the sialidases of Clostridium perfringens.
J.Biol.Chem., 2024
8U0H
DownloadVisualize
BU of 8u0h by Molmil
Crystal structure of PTPN2 with a PROTAC
Descriptor: (5P)-3-(carboxymethoxy)-4-chloro-5-(3-{[(4S)-1-({3-[2-(4-{3-[(3R)-2,6-dioxopiperidin-3-yl]-2-oxo-2,3-dihydro-1,3-benzoxazol-6-yl}piperidin-1-yl)acetamido]phenyl}methanesulfonyl)-2,2-dimethylpiperidin-4-yl]amino}phenyl)thiophene-2-carboxylic acid, ACETATE ION, PTPN2, ...
Authors:Jain, R, Longenecker, K, Qiu, W.
Deposit date:2023-08-29
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Mechanistic insights into a heterobifunctional degrader-induced PTPN2/N1 complex.
Commun Chem, 7, 2024
5MHY
DownloadVisualize
BU of 5mhy by Molmil
The study of the X-ray induced enzymatic reduction of molecular oxygen to water for laccase from Steccherinum murashkinskyi.The seventh structure of the series with total exposition time 183 min.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CITRIC ACID, COPPER (II) ION, ...
Authors:Polyakov, K.M, Gavryushov, S, Fedorova, T.V, Glazunova, O.A, Popov, A.N.
Deposit date:2016-11-27
Release date:2017-05-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural study of the X-ray-induced enzymatic reduction of molecular oxygen to water by Steccherinum murashkinskyi laccase: insights into the reaction mechanism.
Acta Crystallogr D Struct Biol, 73, 2017
8UC5
DownloadVisualize
BU of 8uc5 by Molmil
Apo X-ray crystal structure of Cyclophilin D with a surface entropy reduction mutation (K175I)
Descriptor: CHLORIDE ION, DIMETHYL SULFOXIDE, Peptidyl-prolyl cis-trans isomerase F, ...
Authors:Kreitler, D.F, Rangwala, A.M, Seeliger, M.A.
Deposit date:2023-09-25
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Apo X-ray crystal structure of Cyclophilin D with a surface entropy reduction mutation (K175I)
To Be Published
7CUC
DownloadVisualize
BU of 7cuc by Molmil
Crystal Structure of Urate Oxidase from Bacillus sp. TB-90 in the absence from Chloride Anion at 1.44 A resolution
Descriptor: 2-METHOXYETHANOL, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Hibi, T, Itoh, T.
Deposit date:2020-08-22
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Identification of quasi-stable water molecules near the Thr73-Lys13 catalytic diad of Bacillus sp. TB-90 urate oxidase by X-ray crystallography with controlled humidity.
J.Biochem., 169, 2021
3A91
DownloadVisualize
BU of 3a91 by Molmil
Crystal structure of hen egg white lysozyme soaked with 5mM RhCl3
Descriptor: CHLORIDE ION, Lysozyme C, RHODIUM(III) ION, ...
Authors:Abe, S, Koshiyama, T, Ohki, T, Hikage, T, Watanabe, Y, Ueno, T.
Deposit date:2009-10-15
Release date:2010-03-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Elucidation of Metal-Ion Accumulation Induced by Hydrogen Bonds on Protein Surfaces by Using Porous Lysozyme Crystals Containing Rh(III) Ions as the Model Surfaces
Chemistry, 16, 2010
8TX9
DownloadVisualize
BU of 8tx9 by Molmil
Nan Regulatory Protein (core isomerase domain) from Streptococcus pneumoniae
Descriptor: 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-mannopyranose, MurR/RpiR family transcriptional regulator, SODIUM ION
Authors:Wood, D.M, Horne, C.R, Panjikar, S, Dobson, R.C.J.
Deposit date:2023-08-23
Release date:2024-09-11
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structure of isomerase domain of the nan-regulatory protein (NanR) from Streptococcus pneumoniae
To Be Published
7CVJ
DownloadVisualize
BU of 7cvj by Molmil
Crystal structure of lysozyme by fixed-target serial synchrotron crystallography (100 ms)
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Nam, K.H.
Deposit date:2020-08-26
Release date:2020-09-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Fixed-Target Serial Synchrotron Crystallography Using Nylon Mesh and Enclosed Film-Based Sample Holder
Crystals, 10, 2020
8U3P
DownloadVisualize
BU of 8u3p by Molmil
1.79 Angstrom resolution crystal structure of KatG from Mycobacterium tuberculosis with an MYW cofactor after heat incubation for 60 minutes
Descriptor: ACETATE ION, Catalase-peroxidase, GLYCEROL, ...
Authors:Liu, A, Li, J, Ran, D.
Deposit date:2023-09-08
Release date:2024-09-11
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:1.79 Angstrom resolution crystal structure of KatG from Mycobacterium tuberculosis with an MYW cofactor after heat incubation for 60 minutes
To Be Published
7CVL
DownloadVisualize
BU of 7cvl by Molmil
Crystal structure of lysozyme by fixed-target serial synchrotron crystallography (500 ms)
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Nam, K.H.
Deposit date:2020-08-26
Release date:2020-09-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Fixed-Target Serial Synchrotron Crystallography Using Nylon Mesh and Enclosed Film-Based Sample Holder
Crystals, 10, 2020
5GLQ
DownloadVisualize
BU of 5glq by Molmil
Crystal structure of CoXyl43, GH43 beta-xylosidase/alpha-arabinofuranosidase from a compostmicrobial metagenome in complex with l-arabinose and xylotriose, calcium-free form
Descriptor: Glycoside hydrolase family 43, SODIUM ION, beta-D-xylopyranose-(1-4)-beta-D-xylopyranose, ...
Authors:Matsuzawa, T, Kishine, N, Fujimoto, Z, Yaoi, K.
Deposit date:2016-07-12
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of metagenomic beta-xylosidase/ alpha-l-arabinofuranosidase activated by calcium.
J. Biochem., 162, 2017
3ATN
DownloadVisualize
BU of 3atn by Molmil
Glycine ethyl ester shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Ito, L, Shiraki, K, Hasegawa, K, Kumasaka, T.
Deposit date:2011-01-06
Release date:2012-03-07
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Glycine ethyl ester shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation
To be Published
8UR1
DownloadVisualize
BU of 8ur1 by Molmil
Crystal structure N-acetylneuraminate lyase (NanA) from Klebsiella aerogenes (pyruvate bound halide free active site)
Descriptor: CHLORIDE ION, GLYCEROL, N-acetylneuraminate lyase, ...
Authors:Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2023-10-25
Release date:2023-11-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure N-acetylneuraminate lyase (NanA) from Klebsiella aerogenes (pyruvate bound halide free active site)
To be published
3AR2
DownloadVisualize
BU of 3ar2 by Molmil
Calcium pump crystal structure with bound AMPPCP and Ca2+
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CALCIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
Authors:Toyoshima, C, Yonekura, S, Tsueda, J, Iwasawa, S.
Deposit date:2010-11-24
Release date:2011-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Trinitrophenyl derivatives bind differently from parent adenine nucleotides to Ca2+-ATPase in the absence of Ca2+
Proc.Natl.Acad.Sci.USA, 108, 2011
5GLR
DownloadVisualize
BU of 5glr by Molmil
Crystal structure of CoXyl43, GH43 beta-xylosidase/alpha-arabinofuranosidase from a compostmicrobial metagenome in complex with l-arabinose and xylotriose, calcium-bound form
Descriptor: CALCIUM ION, Glycoside hydrolase family 43, SODIUM ION, ...
Authors:Matsuzawa, T, Kishine, N, Fujimoto, Z, Yaoi, K.
Deposit date:2016-07-12
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of metagenomic beta-xylosidase/ alpha-l-arabinofuranosidase activated by calcium.
J. Biochem., 162, 2017
8UZN
DownloadVisualize
BU of 8uzn by Molmil
Crystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (AMP bound)
Descriptor: ADENOSINE MONOPHOSPHATE, Betaine aldehyde dehydrogenase, SODIUM ION
Authors:Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2023-11-15
Release date:2023-12-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (AMP bound)
To be published
8UZO
DownloadVisualize
BU of 8uzo by Molmil
Crystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (ADP bound)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Betaine aldehyde dehydrogenase, SODIUM ION
Authors:Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2023-11-15
Release date:2023-12-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (ADP bound)
To be published
7CMZ
DownloadVisualize
BU of 7cmz by Molmil
Crystal Structure of BRCT7/8 in Complex with the APS Motif of PHF8
Descriptor: DNA topoisomerase 2-binding protein 1, Histone lysine demethylase PHF8, POTASSIUM ION, ...
Authors:Che, S.Y, Ma, S, Cao, C, Yao, Z, Shi, L, Yang, N.
Deposit date:2020-07-29
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.695 Å)
Cite:PHF8-promoted TOPBP1 demethylation drives ATR activation and preserves genome stability.
Sci Adv, 7, 2021

225399

數據於2024-09-25公開中

PDB statisticsPDBj update infoContact PDBjnumon