PDB: 47902 resultsInfo pagesStatus searchChemie searchBIRD

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7Q6A	Crystal structure of Chaetomium thermophilum C30S Ahp1 in post-reaction state Descriptor: GLYCEROL, SULFATE ION, Thioredoxin domain-containing protein Authors: Ravichandran, K.E, Wilk, P, Grudnik, P, Glatt, S. Deposit date: 2021-11-05 Release date: 2022-08-24 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.1 Å) Cite: E2/E3-independent ubiquitin-like protein conjugation by Urm1 is directly coupled to cysteine persulfidation. Embo J., 41, 2022
7QS8	Structural insight into the Scribble PDZ domains interaction with the oncogenic Human T-cell lymphotrophic virus-1 (HTLV-1) Tax1 Descriptor: Protein Tax-1, Protein scribble homolog Authors: Javorsky, A, Soares da Costa, T.P, Mackie, E.R, Humbert, P.O, Kvansakul, M. Deposit date: 2022-01-13 Release date: 2022-09-07 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural insight into the Scribble PDZ domains interaction with the oncogenic Human T-cell lymphotrophic virus-1 (HTLV-1) Tax1 PBM. Febs J., 290, 2023
7QWX	Empty capsid of Saccharomyces cerevisiae virus L-BCLa Descriptor: Major capsid protein Authors: Grybchuk, D, Prochazkova, M, Fuzik, T, Konovalovas, A, Serva, S, Yurchenko, V, Plevka, P. Deposit date: 2022-01-26 Release date: 2022-09-07 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structures of L-BC virus and its open particle provide insight into Totivirus capsid assembly. Commun Biol, 5, 2022
6DV6	Structure of the Salmonella SPI-1 type III secretion injectisome secretin InvG (residues 176-end) in the open gate state Descriptor: Protein InvG Authors: Hu, J, Worrall, L.J, Vuckovic, M, Atkinson, C.E, Strynadka, N.C.J. Deposit date: 2018-06-22 Release date: 2018-10-03 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Cryo-EM analysis of the T3S injectisome reveals the structure of the needle and open secretin. Nat Commun, 9, 2018
7Q5N	Crystal structure of Chaetomium thermophilum Ahp1-Urm1 complex Descriptor: Thioredoxin domain-containing protein, Ubiquitin-related modifier 1, ZINC ION Authors: Ravichandran, K.E, Wilk, P, Grudnik, P, Glatt, S. Deposit date: 2021-11-04 Release date: 2022-08-24 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.5 Å) Cite: E2/E3-independent ubiquitin-like protein conjugation by Urm1 is directly coupled to cysteine persulfidation. Embo J., 41, 2022
6GNL	Zr(IV)-substituted Keggin directly binding to the side chain of Hen Egg-White Lysozyme (HEWL) Descriptor: CHLORIDE ION, Lysozyme C, ZIRCONIUM(IV) PHOSPHOTUNGSTATE KEGGIN Authors: Vandebroek, L, Van Meervelt, L, Parac-Vogt, T.N. Deposit date: 2018-05-31 Release date: 2018-10-31 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.23 Å) Cite: Direct observation of the ZrIVinteraction with the carboxamide bond in a noncovalent complex between Hen Egg White Lysozyme and a Zr-substituted Keggin polyoxometalate. Acta Crystallogr C Struct Chem, 74, 2018
6DWA	Structure of the 4497 Antibody Fab fragment bound to a Staphylococcus aureus wall techoic acid analog Descriptor: 4-O-[2-acetamido-2-deoxy-beta-D-glucopyranosyl]-1-O-phosphono-D-ribitol, 4497 Fab Heavy Chain, 4497 Fab Light Chain Authors: Fong, R, Lupardus, P.J. Deposit date: 2018-06-26 Release date: 2018-08-29 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.922 Å) Cite: Structural investigation of human S. aureus-targeting antibodies that bind wall teichoic acid. MAbs, 10, 2018
4MRF	Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule Descriptor: 1,2,3,4-tetrahydroisoquinoline, CD44 antigen, DIMETHYL SULFOXIDE, ... Authors: Liu, L.K, Finzel, B. Deposit date: 2013-09-17 Release date: 2014-04-16 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Fragment-Based Identification of an Inducible Binding Site on Cell Surface Receptor CD44 for the Design of Protein-Carbohydrate Interaction Inhibitors. J.Med.Chem., 57, 2014
6GJT	Chlamydia protein Pgp3 studied at high resolution in a new crystal form Descriptor: BROMIDE ION, POTASSIUM ION, Virulence plasmid protein pGP3-D Authors: Helliwell, J.R. Deposit date: 2018-05-17 Release date: 2018-07-25 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.98 Å) Cite: Chlamydia protein Pgp3 studied at high resolution in a new crystal form. IUCrJ, 5, 2018
6GNP	Crystal Structure Of Sea Bream Transthyretin in complex with 3,5,6-trichloro-2-pyridinol (TC2P) Descriptor: 3,5,6-trichloro-2-pyridinol, Transthyretin Authors: Grundstrom, C, Zhang, J, Olofsson, A, Andersson, P.L, Sauer-Eriksson, A.E. Deposit date: 2018-05-31 Release date: 2018-07-11 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.019 Å) Cite: Interspecies Variation between Fish and Human Transthyretins in Their Binding of Thyroid-Disrupting Chemicals. Environ. Sci. Technol., 52, 2018
6DPA	Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 4 mM Mn2+ and 200 mM K+ for 40 s at 21 C Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*AP*TP*GP*T)-3'), GLYCEROL, ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.489 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
3WRI	Crystal structure of P450cam Descriptor: CAMPHOR, Camphor 5-monooxygenase, PROTOPORPHYRIN IX CONTAINING FE Authors: Kishimoto, A, Takagi, K, Amano, A, Sakurai, K, Mizushima, T, Shimada, H. Deposit date: 2014-02-25 Release date: 2015-03-18 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structure of P450cam intermediate To be Published
6DDF	Mu Opioid Receptor-Gi Protein Complex Descriptor: DAMGO, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ... Authors: Koehl, A, Hu, H, Maeda, S, Manglik, A, Kobilka, B.K, Skiniotis, G, Weis, W.I. Deposit date: 2018-05-10 Release date: 2018-06-13 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structure of the mu-opioid receptor-Giprotein complex. Nature, 558, 2018
6DPL	Crystal Structure of Bacillus Halodurans Ribonuclease H1 K196A in Complex with an RNA/DNA Hybrid: Reaction in 10 mM Mg2+ and 200 mM Rb+ for 720 s at 21 C Descriptor: 1,2-ETHANEDIOL, 5'-R(*AP*CP*AP*U)-3' portion of cleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3', 5'-R(P*CP*G)-3' portion of cleaved RNA (5'-R(*AP*CP*AP*UP*CP*G)-3'), ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
6GO9	Structure of GFPmut2 crystallized at pH 6 and transferred to pH 7 Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, Green fluorescent protein Authors: Lolli, G, Raboni, S, Pasqualetto, E, Campanini, B, Mozzarelli, A, Bettati, S, Battistutta, R. Deposit date: 2018-06-01 Release date: 2018-12-19 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.672 Å) Cite: Insight into GFPmut2 pH Dependence by Single Crystal Microspectrophotometry and X-ray Crystallography. J.Phys.Chem.B, 122, 2018
6DQD	LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR N53 i.e. 2-(5-([1,1'-biphenyl]-3-yl)-4-(1-(2-(piperidin-1-yl)ethoxy)ethyl)-1H-pyrazol-1-yl)isonicotinic acid Descriptor: 2-[5-([1,1'-biphenyl]-3-yl)-4-{(1S)-1-[2-(piperidin-1-yl)ethoxy]ethyl}-1H-pyrazol-1-yl]pyridine-4-carboxylic acid, DIMETHYL SULFOXIDE, GLYCEROL, ... Authors: Horton, J.R, Cheng, X. Deposit date: 2018-06-10 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.987 Å) Cite: To be determined To Be Published
3W6G	Structure of peroxiredoxin from anaerobic hyperthermophilic archaeon Pyrococcus horikoshii Descriptor: CITRATE ANION, Probable peroxiredoxin Authors: Nakamura, T, Mori, A, Niiyama, M, Matsumura, H, Tokuyama, C, Morita, J, Uegaki, K, Inoue, T. Deposit date: 2013-02-14 Release date: 2013-07-10 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structure of peroxiredoxin from the anaerobic hyperthermophilic archaeon Pyrococcus horikoshii Acta Crystallogr.,Sect.F, 69, 2013
6GMS	Solution NMR structure of the major type IV pilin PpdD from enterohemorrhagic Escherichia coli (EHEC) Descriptor: Prepilin peptidase-dependent protein D Authors: Amorim, G.C, Bardiaux, B, Luna-Rico, A, Zeng, W, Guilvout, I, Egelman, E, Nilges, M, Francetic, O, Izadi-Pruneyre, N. Deposit date: 2018-05-28 Release date: 2019-05-15 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Structure and Assembly of the Enterohemorrhagic Escherichia coli Type 4 Pilus. Structure, 27, 2019
7OZ7	Crystal structure of DPP8 in complex with a 4-oxo-b-lactam based inhibitor, L84 Descriptor: Dipeptidyl peptidase 8, trimethylamine oxide, ~{N}-[3-[[4-[(4-bromophenyl)methyl]piperazin-1-yl]methyl]phenyl]-2-ethyl-2-methanoyl-butanamide Authors: Ross, B, Huber, R. Deposit date: 2021-06-26 Release date: 2021-07-14 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Chemoproteomics-Enabled Identification of 4-Oxo-beta-Lactams as Inhibitors of Dipeptidyl Peptidases 8 and 9. Angew.Chem.Int.Ed.Engl., 61, 2022
4N0G	Crystal Structure of PYL13-PP2CA complex Descriptor: Abscisic acid receptor PYL13, MAGNESIUM ION, Protein phosphatase 2C 37, ... Authors: Li, W, Wang, L, Sheng, X, Yan, C, Zhou, R, Hang, J, Yin, P, Yan, N. Deposit date: 2013-10-01 Release date: 2013-11-13 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.382 Å) Cite: Molecular basis for the selective and ABA-independent inhibition of PP2CA by PYL13 Cell Res., 23, 2013
7OR4	Crystal structure of DPP8 in complex with a 4-oxo-b-lactam based inhibitor, B142 Descriptor: Dipeptidyl peptidase 8, methyl 3-[4-[(4-bromophenyl)methyl]piperazin-1-yl]carbonyl-5-[(2-ethyl-2-methanoyl-butanoyl)amino]benzoate, trimethylamine oxide Authors: Ross, B, Huber, R. Deposit date: 2021-06-04 Release date: 2021-07-07 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.44 Å) Cite: Chemoproteomics-Enabled Identification of 4-Oxo-beta-Lactams as Inhibitors of Dipeptidyl Peptidases 8 and 9. Angew.Chem.Int.Ed.Engl., 61, 2022
7OW0	1.55 A crystal structure of DNA/2'-O-methyl-RNA heteroduplex with overhangs solved by Zn-SAD. Descriptor: DNA (5'-D(*TP*CP*TP*CP*CP*TP*AP*GP*G)-3'), RNA (5'-R(*(OMC)P*(OMU)P*(A2M)P*(OMG)P*(OMG)P*(A2M)P*(OMG)P*(A2M)P*(OMC))-3'), ZINC ION Authors: Dolot, R.M, Maciaszek, A, Nawrot, B.C. Deposit date: 2021-06-15 Release date: 2021-07-14 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.55 Å) Cite: First High-Resolution Crystal Structures of DNA:2'-O-Methyl-RNA Heteroduplexes Crystals, 2022
6DR0	Class 5 IP3-bound human type 3 1,4,5-inositol trisphosphate receptor Descriptor: D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE, Inositol 1,4,5-trisphosphate receptor type 3, ZINC ION Authors: Hite, R.K, Paknejad, N. Deposit date: 2018-06-11 Release date: 2018-08-01 Last modified: 2018-08-15 Method: ELECTRON MICROSCOPY (4.47 Å) Cite: Structural basis for the regulation of inositol trisphosphate receptors by Ca2+and IP3. Nat. Struct. Mol. Biol., 25, 2018
7OLE	Cryo-EM structure of the TELO2-TTI1-TTI2-RUVBL1-RUVBL2 complex Descriptor: ADENOSINE-5'-DIPHOSPHATE, RuvB-like 1, RuvB-like 2, ... Authors: Pal, M, Llorca, O, Pearl, L. Deposit date: 2021-05-19 Release date: 2021-07-07 Last modified: 2021-10-06 Method: ELECTRON MICROSCOPY (3.41 Å) Cite: Structure of the TELO2-TTI1-TTI2 complex and its function in TOR recruitment to the R2TP chaperone. Cell Rep, 36, 2021
8U8K	Co-crystal structure of phosphorylated ERK2 in complex with ERK1/2 inhibitor #8 Descriptor: (4M)-4-{(4S)-3-[(2-chloropyridin-3-yl)methyl][1,2,4]triazolo[4,3-a]pyridin-7-yl}-N-(oxan-4-yl)pyrimidin-2-amine, Mitogen-activated protein kinase 1 Authors: Anderson, J.W, Vigers, G.P. Deposit date: 2023-09-18 Release date: 2024-03-27 Last modified: 2024-04-10 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Conformation selection by ATP-competitive inhibitors and allosteric communication in ERK2. Elife, 12, 2024

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