PDB: 47902 resultsInfo pagesStatus searchChemie searchBIRD

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2QR0	Structure of VEGF complexed to a Fab containing TYR and SER in the CDRs Descriptor: Fab-Fragment Heavy Chain, Fab-Fragment Light Chain, Vascular endothelial growth factor A Authors: Wiesmann, C. Deposit date: 2007-07-27 Release date: 2007-08-14 Last modified: 2017-10-25 Method: X-RAY DIFFRACTION (3.5 Å) Cite: High-throughput generation of synthetic antibodies from highly functional minimalist phage-displayed libraries J.Mol.Biol., 373, 2007
3CMX	Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(*DAP*DAP*DAP*DAP*DAP*DAP*DAP*DAP*DAP*DAP*DAP*DA)-3'), DNA (5'-D(*DTP*DTP*DTP*DTP*DTP*DTP*DTP*DTP*DTP*DTP*DTP*DTP*DTP*DTP*DT)-3'), ... Authors: Pavletich, N.P. Deposit date: 2008-03-24 Release date: 2008-05-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures. Nature, 453, 2008
3COJ	Crystal Structure of the BRCT Domains of Human BRCA1 in Complex with a Phosphorylated Peptide from Human Acetyl-CoA Carboxylase 1 Descriptor: Acetyl-CoA carboxylase 1, Breast cancer type 1 susceptibility protein Authors: Shen, Y, Tong, L. Deposit date: 2008-03-28 Release date: 2008-05-27 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.21 Å) Cite: Structural evidence for direct interactions between the BRCT domains of human BRCA1 and a phospho-peptide from human ACC1 Biochemistry, 47, 2008
1RCX	NON-ACTIVATED SPINACH RUBISCO IN COMPLEX WITH ITS SUBSTRATE RIBULOSE-1,5-BISPHOSPHATE Descriptor: RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE, RIBULOSE-1,5-DIPHOSPHATE Authors: Taylor, T.C, Andersson, I. Deposit date: 1996-12-06 Release date: 1997-06-16 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: The structure of the complex between rubisco and its natural substrate ribulose 1,5-bisphosphate. J.Mol.Biol., 265, 1997
2QTB	Human dipeptidyl peptidase iv/cd26 in complex with a 4-aryl cyclohexylalanine inhibitor Descriptor: (2S,3S)-3-AMINO-4-(3,3-DIFLUOROPYRROLIDIN-1-YL)-N,N-DIMETHYL-4-OXO-2-(TRANS-4-[1,2,4]TRIAZOLO[1,5-A]PYRIDIN-6-YLCYCLOHEXYL)BUTANAMIDE, 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Scapin, G. Deposit date: 2007-08-01 Release date: 2007-11-06 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.25 Å) Cite: 4-Arylcyclohexylalanine analogs as potent, selective, and orally active inhibitors of dipeptidyl peptidase IV. Bioorg.Med.Chem.Lett., 17, 2007
2QUW	Hammerhead Ribozyme G12A mutant after cleavage Descriptor: Hammerhead ribozyme, cleaved fragment, MAGNESIUM ION Authors: Chi, Y.I, Scott, W.G, Kim, S.H. Deposit date: 2007-08-06 Release date: 2008-07-15 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Capturing hammerhead ribozyme structures in action by modulating general base catalysis. Plos Biol., 6, 2008
3A71	High resolution structure of Penicillium chrysogenum alpha-L-arabinanase Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, Exo-arabinanase Authors: Sogabe, Y. Deposit date: 2009-09-11 Release date: 2010-09-15 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.14 Å) Cite: High-resolution structure of exo-arabinanase from Penicillium chrysogenum Acta Crystallogr.,Sect.D, 67, 2011
3ABZ	Crystal structure of Se-Met labeled Beta-glucosidase from Kluyveromyces marxianus Descriptor: Beta-glucosidase I, GLYCEROL Authors: Yoshida, E, Hidaka, M, Fushinobu, S, Katayama, T, Kumagai, H. Deposit date: 2009-12-25 Release date: 2010-08-11 Last modified: 2013-10-30 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Role of a PA14 domain in determining substrate specificity of a glycoside hydrolase family 3 beta-glucosidase from Kluyveromyces marxianus. Biochem.J., 431, 2010
1RQ7	MYCOBACTERIUM TUBERCULOSIS FTSZ IN COMPLEX WITH GDP Descriptor: Cell division protein ftsZ, GUANOSINE-5'-DIPHOSPHATE Authors: Leung, A.K.W, White, E.L, Ross, L.J, Reynolds, R.C, DeVito, J.A, Borhani, D.W. Deposit date: 2003-12-04 Release date: 2004-08-31 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure of Mycobacterium tuberculosis FtsZ reveals unexpected, G protein-like conformational switches. J.Mol.Biol., 342, 2004
2QVX	4-Chlorobenzoyl-CoA Ligase/Synthetase, I303G mutation, bound to 3-Chlorobenzoate Descriptor: 3-chlorobenzoate, 4-Chlorobenzoate CoA Ligase Authors: Wu, R, Reger, A.S, Cao, J, Gulick, A.M, Dunaway-Mariano, D. Deposit date: 2007-08-09 Release date: 2007-12-18 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Rational redesign of the 4-chlorobenzoate binding site of 4-chlorobenzoate: coenzyme a ligase for expanded substrate range. Biochemistry, 46, 2007
2QXL	Crystal Structure Analysis of Sse1, a yeast Hsp110 Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Heat shock protein homolog SSE1, MAGNESIUM ION, ... Authors: Hendrickson, W.A, Liu, Q. Deposit date: 2007-08-12 Release date: 2007-10-23 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.41 Å) Cite: Insights into hsp70 chaperone activity from a crystal structure of the yeast hsp110 Sse1. Cell(Cambridge,Mass.), 131, 2007
1RS8	Bovine endothelial NOS heme domain with D-lysine-D-nitroarginine amide bound Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, CACODYLATE ION, ... Authors: Flinspach, M, Li, H, Jamal, J, Yang, W, Huang, H, Silverman, R.B, Poulos, T.L. Deposit date: 2003-12-09 Release date: 2004-06-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structures of the neuronal and endothelial nitric oxide synthase heme domain with D-nitroarginine-containing dipeptide inhibitors bound. Biochemistry, 43, 2004
2QWS	Neutron and X-ray structural studies of short hydrogen bonds in Photoactive Yellow Protein (PYP) Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Fisher, S.Z, Langan, P. Deposit date: 2007-08-10 Release date: 2008-03-18 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Neutron and X-ray structural studies of short hydrogen bonds in photoactive yellow protein (PYP) Acta Crystallogr.,Sect.D, 63, 2007
2QZV	Draft Crystal Structure of the Vault Shell at 9 Angstroms Resolution Descriptor: Major vault protein Authors: Anderson, D.H, Kickhoefer, V.A, Sievers, S.A, Rome, L.H, Eisenberg, D. Deposit date: 2007-08-17 Release date: 2007-12-04 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (9 Å) Cite: Draft crystal structure of the vault shell at 9-A resolution. Plos Biol., 5, 2007
2R1Q	Crystal Structure of Iodinated Human Saposin D in Space Group C2221 Descriptor: Proactivator polypeptide Authors: Maier, T, Rossman, M, Saenger, W. Deposit date: 2007-08-23 Release date: 2008-04-29 Last modified: 2017-10-25 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structures of human saposins C and d: implications for lipid recognition and membrane interactions. Structure, 16, 2008
3AC9	Crystal structure of human NUDT5 complexed with 8-oxo-dGDP and manganese Descriptor: 2'-deoxy-8-oxoguanosine 5'-(trihydrogen diphosphate), ADP-sugar pyrophosphatase, MANGANESE (II) ION Authors: Arimori, T, Yamagata, Y. Deposit date: 2009-12-30 Release date: 2011-01-12 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Diverse substrate recognition and hydrolysis mechanisms of human NUDT5 Nucleic Acids Res., 39, 2011
1R86	Crystal structure of the extracellular xylanase from Geobacillus stearothermophilus T-6 (XT6, monoclinic form): The E159A/E265A mutant at 1.8A resolution Descriptor: CHLORIDE ION, Endo-1,4-beta-xylanase, SULFATE ION, ... Authors: Bar, M, Golan, G, Zolotnitsky, G, Shoham, Y, Shoham, G. Deposit date: 2003-10-23 Release date: 2005-07-19 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure of the extracellular xylanase from Geobacillus stearothermophilus T-6 (XT6, monoclinic form): The E159A/E265A mutant at 1.8A resolution To be Published
1R9N	Crystal Structure of human dipeptidyl peptidase IV in complex with a decapeptide (tNPY) at 2.3 Ang. Resolution Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Dipeptidyl peptidase IV, ... Authors: Aertgeerts, K, Ye, S, Tennant, M.G, Collins, B, Rogers, J, Sang, B.-C, Skene, R, Webb, D.R, Prasad, G.S. Deposit date: 2003-10-30 Release date: 2005-03-29 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structure of human dipeptidyl peptidase IV in complex with a decapeptide reveals details on substrate specificity and tetrahedral intermediate formation. Protein Sci., 13, 2004
1RGA	CRYSTAL STRUCTURE OF RNASE T1 WITH 3'-GMP AND GUANOSINE: A PRODUCT COMPLEX Descriptor: CALCIUM ION, GUANOSINE-3'-MONOPHOSPHATE, GUANOSINE-5'-MONOPHOSPHATE, ... Authors: Zegers, I, Wyns, L. Deposit date: 1993-06-07 Release date: 1993-10-31 Last modified: 2017-11-29 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of RNase T1 with 3'-guanylic acid and guanosine. J.Biol.Chem., 269, 1994
1RE9	CRYSTAL STRUCTURE OF CYTOCHROME P450-CAM WITH A FLUORESCENT PROBE D-8-AD (ADAMANTANE-1-CARBOXYLIC ACID-5-DIMETHYLAMINO-NAPHTHALENE-1-SULFONYLAMINO-OCTYL-AMIDE) Descriptor: 1,2-ETHANEDIOL, ADAMANTANE-1-CARBOXYLIC ACID-5-DIMETHYLAMINO-NAPHTHALENE-1-SULFONYLAMINO-OCTYL-AMIDE, Cytochrome P450-cam, ... Authors: Hays, A.-M.A, Dunn, A.R, Gray, H.B, Stout, C.D, Goodin, D.B. Deposit date: 2003-11-06 Release date: 2004-11-16 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Conformational states of cytochrome P450cam revealed by trapping of synthetic molecular wires. J.Mol.Biol., 344, 2004
3AH7	Crystal structure of the ISC-like [2Fe-2S] ferredoxin (FdxB) from Pseudomonas putida JCM 20004 Descriptor: CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, SODIUM ION, ... Authors: Kumasaka, T, Shimizu, N, Ohmori, D, Iwasaki, T. Deposit date: 2010-04-20 Release date: 2011-04-20 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of the ISC-like [2Fe-2S] ferredoxin (FdxB) from Pseudomonas putida JCM 20004 To be Published
3ALA	Crystal structure of vascular adhesion protein-1 in space group C2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Ernberg, K.E, McGrath, A.P, Guss, J.M. Deposit date: 2010-07-29 Release date: 2010-12-15 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.9 Å) Cite: A new crystal form of human vascular adhesion protein 1 Acta Crystallogr.,Sect.F, 66, 2010
2QJH	M. jannaschii ADH synthase covalently bound to dihydroxyacetone phosphate Descriptor: 1,3-DIHYDROXYACETONEPHOSPHATE, Putative aldolase MJ0400 Authors: Ealick, S.E, Morar, M. Deposit date: 2007-07-07 Release date: 2007-10-30 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure of 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acid synthase, a catalyst in the archaeal pathway for the biosynthesis of aromatic amino acids. Biochemistry, 46, 2007
3ALG	Crystal Structure of Class V Chitinase (E115Q mutant) from Nicotiana tobaccum in complex with NAG4 Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase, ... Authors: Numata, T, Osawa, T, Ohnuma, T, Fukamizo, T. Deposit date: 2010-08-03 Release date: 2011-03-23 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure and mode of action of a class V chitinase from Nicotiana tabacum Plant Mol.Biol., 75, 2011
3ALQ	Crystal structure of TNF-TNFR2 complex Descriptor: COBALT (II) ION, Tumor necrosis factor, Tumor necrosis factor receptor superfamily member 1B Authors: Mukai, Y, Nakamura, T, Yamagata, Y, Tsutsumi, Y. Deposit date: 2010-08-06 Release date: 2010-11-17 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3 Å) Cite: Solution of the Structure of the TNF-TNFR2 Complex Sci.Signal., 3, 2010

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