Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5NYV
DownloadVisualize
BU of 5nyv by Molmil
Crystal structure determination from picosecond infrared laser ablated protein crystals by serial synchrotron crystallography
Descriptor: Fluoroacetate dehalogenase
Authors:Schulz, E.C, Kaub, J, Busse, F, Mehrabi, P, Mueller-Werkmeiser, H, Pai, E.F, Robertson, W.D, Miller, R.J.D.
Deposit date:2017-05-11
Release date:2018-03-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Protein crystals IR laser ablated from aqueous solution at high speed retain their diffractive properties: applications in high-speed serial crystallography.
J.Appl.Crystallogr., 50, 2017
6C05
DownloadVisualize
BU of 6c05 by Molmil
Mycobacterium tuberculosis RNAP Holo/RbpA in relaxed state
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Darst, S.A, Campbell, E.A, Boyaci Selcuk, H, Chen, J, Lilic, M.
Deposit date:2017-12-27
Release date:2018-03-28
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (5.15 Å)
Cite:Fidaxomicin jamsMycobacterium tuberculosisRNA polymerase motions needed for initiation via RbpA contacts.
Elife, 7, 2018
6I4R
DownloadVisualize
BU of 6i4r by Molmil
Crystal structure of the disease-causing R460G mutant of the human dihydrolipoamide dehydrogenase at 1.44 Angstrom resolution
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Dihydrolipoyl dehydrogenase, mitochondrial, ...
Authors:Szabo, E, Wilk, P, Bui, D, Torocsik, B, Weiss, M.S, Adam-Vizi, V, Ambrus, A.
Deposit date:2018-11-10
Release date:2019-11-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.439 Å)
Cite:Underlying molecular alterations in human dihydrolipoamide dehydrogenase deficiency revealed by structural analyses of disease-causing enzyme variants.
Hum.Mol.Genet., 28, 2019
7MW7
DownloadVisualize
BU of 7mw7 by Molmil
Crystal structure of P1G mutant of D-dopachrome tautomerase
Descriptor: D-dopachrome decarboxylase, SODIUM ION, SULFATE ION
Authors:Manjula, R, Murphy, E.L, Murphy, J.W, Lolis, E.
Deposit date:2021-05-15
Release date:2021-08-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:A structurally preserved allosteric site in the MIF superfamily affects enzymatic activity and CD74 activation in D-dopachrome tautomerase.
J.Biol.Chem., 297, 2021
5O3Z
DownloadVisualize
BU of 5o3z by Molmil
Crystal structure of Sorbitol-6-Phosphate 2-dehydrogenase SrlD from Erwinia amylovora
Descriptor: CHLORIDE ION, Sorbitol-6-phosphate dehydrogenase
Authors:Salomone-Stagni, M, Bartho, J.D, Bellini, D, Walsh, M.A, Benini, S.
Deposit date:2017-05-25
Release date:2018-06-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural and functional analysis of Erwinia amylovora SrlD. The first crystal structure of a sorbitol-6-phosphate 2-dehydrogenase.
J.Struct.Biol., 203, 2018
6VEC
DownloadVisualize
BU of 6vec by Molmil
Cryo-EM structure of F-actin/Plastin2-ABD2 complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Zheng, W, Kudryashov, D.S, Egelman, E.H.
Deposit date:2019-12-31
Release date:2020-12-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Osteogenesis imperfecta mutations in plastin 3 lead to impaired calcium regulation of actin bundling.
Bone Res, 8, 2020
2UWD
DownloadVisualize
BU of 2uwd by Molmil
Inhibition of the HSP90 molecular chaperone in vitro and in vivo by novel, synthetic, potent resorcinylic pyrazole, isoxazole amide analogs
Descriptor: 5-(5-CHLORO-2,4-DIHYDROXYPHENYL)-N-ETHYL-4-(4-METHOXYPHENYL)ISOXAZOLE-3-CARBOXAMIDE, HEAT SHOCK PROTEIN HSP 90-ALPHA, MAGNESIUM ION, ...
Authors:Sharp, S.Y, Prodromou, C, Boxall, K, Powers, M.V, Holmes, J.L, Box, G, Matthews, T.P, Cheung, K.M, Kalusa, A, James, K, Hayes, A, Hardcastle, A, Dymock, B, Brough, P.A, Barril, X, Cansfield, J.E, Wright, L.M, Surgenor, A, Foloppe, N, Aherne, W, Pearl, L, Jones, K, McDonald, E, Raynaud, F, Eccles, S, Drysdale, M, Workman, P.
Deposit date:2007-03-20
Release date:2007-04-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Inhibition of the heat shock protein 90 molecular chaperone in vitro and in vivo by novel, synthetic, potent resorcinylic pyrazole/isoxazole amide analogues.
Mol. Cancer Ther., 6, 2007
1UNM
DownloadVisualize
BU of 1unm by Molmil
Crystal structure of 7-Aminoactinomycin D with non-complementary DNA
Descriptor: 5'-D(*TP*TP*AP*GP*BRU*TP)-3', 7-AMINOACTINOMYCIN D
Authors:Alexopoulos, E.C, Klement, R, Jares-Erijman, E.A, Uson, I, Jovin, T.M, Sheldrick, G.M.
Deposit date:2003-09-11
Release date:2004-09-24
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal and Solution Structures of 7-Amino-Actinomycin D Complexes with D(Ttagbrut), D(Ttagtt) and D(Tttagttt)
Acta Crystallogr.,Sect.D, 61, 2005
8FB4
DownloadVisualize
BU of 8fb4 by Molmil
Structure of an alternating AT 16-mer bound by diamidine DB1476: 5'-GCTGGATATATCCAGC-3
Descriptor: 4,4'-(1H-benzimidazole-2,6-diyl)di(benzene-1-carboximidamide), CALCIUM ION, DNA (5'-D(*GP*CP*TP*GP*GP*AP*TP*AP*TP*AP*TP*CP*CP*AP*GP*C)-3')
Authors:Terrell, J.R, Ogbonna, E.N, Wilson, W.D.
Deposit date:2022-11-29
Release date:2023-02-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences.
Acs Bio Med Chem Au, 3, 2023
8X7R
DownloadVisualize
BU of 8x7r by Molmil
C05-03-bound E46K alpha-synuclein fibrils
Descriptor: 2-[(~{E})-4-[6-(methylamino)pyridin-3-yl]but-1-en-3-ynyl]-1,3-benzothiazol-6-ol, Alpha-synuclein
Authors:Liu, K.E, Tao, Y.Q, Li, D, Liu, C.
Deposit date:2023-11-24
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Binding adaptability of chemical ligands to polymorphic alpha-synuclein amyloid fibrils.
Proc.Natl.Acad.Sci.USA, 121, 2024
6S5U
DownloadVisualize
BU of 6s5u by Molmil
Strictosidine Synthase from Ophiorrhiza pumila in complex with N-[2-(1H-Indol-3-yl)ethyl]-3-methyl-1-butanamine
Descriptor: Strictosidine synthase, ~{N}-[2-(1~{H}-indol-3-yl)ethyl]-3-methyl-butan-1-amine
Authors:Eger, E, Sharma, M, Kroutil, W, Grogan, G.
Deposit date:2019-07-02
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Inverted Binding of Non-natural Substrates in Strictosidine Synthase Leads to a Switch of Stereochemical Outcome in Enzyme-Catalyzed Pictet-Spengler Reactions.
J.Am.Chem.Soc., 142, 2020
8X7L
DownloadVisualize
BU of 8x7l by Molmil
EB-bound E46K alpha-synuclein fibrils
Descriptor: 4-azanyl-6-[[4-[4-[(~{E})-(8-azanyl-1-oxidanyl-5,7-disulfo-naphthalen-2-yl)diazenyl]-3-methyl-phenyl]-2-methyl-phenyl]diazenyl]-5-oxidanyl-naphthalene-1,3-disulfonic acid, Alpha-synuclein
Authors:Liu, K.E, Tao, Y.Q, Li, D, Liu, C.
Deposit date:2023-11-24
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Binding adaptability of chemical ligands to polymorphic alpha-synuclein amyloid fibrils.
Proc.Natl.Acad.Sci.USA, 121, 2024
6RLP
DownloadVisualize
BU of 6rlp by Molmil
Cryo-EM reconstruction of TMV coat protein
Descriptor: Capsid protein, RNA (5'-R(P*GP*AP*A)-3')
Authors:Kandiah, E, Effantin, G.
Deposit date:2019-05-02
Release date:2022-11-23
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:CM01: a facility for cryo-electron microscopy at the European Synchrotron.
Acta Crystallogr D Struct Biol, 75, 2019
3L4E
DownloadVisualize
BU of 3l4e by Molmil
1.5A Crystal Structure of a Putative Peptidase E Protein from Listeria monocytogenes EGD-e
Descriptor: SULFATE ION, Uncharacterized peptidase Lmo0363
Authors:Brunzelle, J.S, Onopriyenko, O, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2009-12-19
Release date:2010-07-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:1.5A Crystal Structure of a Putative Peptidase E Protein from Listeria monocytogenes EGD-e
To be Published
2ASL
DownloadVisualize
BU of 2asl by Molmil
oxoG-modified Postinsertion Binary Complex
Descriptor: 5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3', CALCIUM ION, ...
Authors:Rechkoblit, O, Malinina, L, Cheng, Y, Kuryavyi, V, Broyde, S, Geacintov, N.E, Patel, D.J.
Deposit date:2005-08-23
Release date:2006-01-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Stepwise Translocation of Dpo4 Polymerase during Error-Free Bypass of an oxoG Lesion
Plos Biol., 4, 2006
5NWA
DownloadVisualize
BU of 5nwa by Molmil
Crystal structure of the complex of Tdp1 with duplex DNA
Descriptor: DNA (5'-D(P*AP*AP*TP*GP*CP*GP*CP*AP*TP*TP*A)-3'), Tyrosyl-DNA phosphodiesterase 1
Authors:Richardson, J.M, Ruksenaite, E, Morris, E.R.
Deposit date:2017-05-05
Release date:2018-01-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for DNA 3'-end processing by human tyrosyl-DNA phosphodiesterase 1.
Nat Commun, 9, 2018
5L5W
DownloadVisualize
BU of 5l5w by Molmil
Yeast 20S proteasome with human beta5c (1-138) and human beta6 (97-111; 118-133)
Descriptor: CHLORIDE ION, MAGNESIUM ION, Probable proteasome subunit alpha type-7, ...
Authors:Groll, M, Huber, E.M.
Deposit date:2016-05-28
Release date:2016-11-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A humanized yeast proteasome identifies unique binding modes of inhibitors for the immunosubunit beta 5i.
EMBO J., 35, 2016
3E45
DownloadVisualize
BU of 3e45 by Molmil
Q138F HincII bound to Noncognate DNA (GTGCAC) and Ca2+
Descriptor: 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DGP*DCP*DAP*DCP*DCP*DGP*DGP*DC)-3', CALCIUM ION, SODIUM ION, ...
Authors:Horton, N.C, Babic, A.C, Little, E.J, Manohar, V.M.
Deposit date:2008-08-08
Release date:2008-08-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:DNA distortion and specificity in a sequence-specific endonuclease.
J.Mol.Biol., 383, 2008
7ZPP
DownloadVisualize
BU of 7zpp by Molmil
Cryo-EM structure of the MVV CSC intasome at 4.5A resolution
Descriptor: Integrase, vDNA, non-transferred strand, ...
Authors:Ballandras-Colas, A, Maskell, D, Pye, V.E, Locke, J, Swuec, S, Kotecha, A, Costa, A, Cherepanov, P.
Deposit date:2022-04-28
Release date:2022-05-11
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:A supramolecular assembly mediates lentiviral DNA integration
Science, 355, 2017
1G1O
DownloadVisualize
BU of 1g1o by Molmil
CRYSTAL STRUCTURE OF THE HIGHLY AMYLOIDOGENIC TRANSTHYRETIN MUTANT TTR G53S/E54D/L55S
Descriptor: TRANSTHYRETIN
Authors:Eneqvist, T, Andersson, K, Olofsson, A, Lundgren, E, Sauer-Eriksson, A.E.
Deposit date:2000-10-13
Release date:2001-10-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The beta-slip: a novel concept in transthyretin amyloidosis.
Mol.Cell, 6, 2000
8YKX
DownloadVisualize
BU of 8ykx by Molmil
Cryo-EM structure of succinate receptor SUCR1 bound to maleic acid
Descriptor: Antibody fragment ScFv16, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Li, C, Liu, H, Li, J, Zhu, H, Fu, W, Xu, H.E.
Deposit date:2024-03-05
Release date:2024-05-29
Last modified:2024-08-14
Method:ELECTRON MICROSCOPY (2.69 Å)
Cite:Molecular basis of ligand recognition and activation of the human succinate receptor SUCR1.
Cell Res., 34, 2024
1BMF
DownloadVisualize
BU of 1bmf by Molmil
BOVINE MITOCHONDRIAL F1-ATPASE
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BOVINE MITOCHONDRIAL F1-ATPASE, MAGNESIUM ION, ...
Authors:Abrahams, J.P, Leslie, A.G.W, Lutter, R, Walker, J.E.
Deposit date:1996-03-13
Release date:1996-12-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria.
Nature, 370, 1994
5O2G
DownloadVisualize
BU of 5o2g by Molmil
Crystal structure determination from picosecond infrared laser ablated protein crystals by serial synchrotron crystallography
Descriptor: Fluoroacetate dehalogenase
Authors:Schulz, E.C, Kaub, J, Busse, F, Mehrabi, P, Mueller-Werkmeiser, H, Pai, E.F, Robertson, W.D, Miller, R.J.D.
Deposit date:2017-05-20
Release date:2018-05-30
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure determination from picosecond infrared laser ablated protein crystals by serial synchrotron crystallography
To Be Published
7ZI0
DownloadVisualize
BU of 7zi0 by Molmil
Structure of human Smoothened in complex with cholesterol and SAG
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-chloro-N-[trans-4-(methylamino)cyclohexyl]-N-{[3-(pyridin-4-yl)phenyl]methyl}-1-benzothiophene-2-carboxamide, CHOLESTEROL, ...
Authors:Byrne, E.F.X, Woolley, R.E, Ansell, B, Sansom, M.S.P, Newstead, S, Siebold, C.
Deposit date:2022-04-07
Release date:2022-06-15
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:Patched 1 regulates Smoothened by controlling sterol binding to its extracellular cysteine-rich domain.
Sci Adv, 8, 2022
2V9C
DownloadVisualize
BU of 2v9c by Molmil
X-ray Crystallographic Structure of a Pseudomonas aeruginosa Azoreductase in Complex with Methyl Red.
Descriptor: 2-(4-DIMETHYLAMINOPHENYL)DIAZENYLBENZOIC ACID, FLAVIN MONONUCLEOTIDE, FMN-DEPENDENT NADH-AZOREDUCTASE 1, ...
Authors:Wang, C.-J, Hagemeier, C, Rahman, N, Lowe, E.D, Noble, M.E.M, Coughtrie, M, Sim, E, Westwood, I.M.
Deposit date:2007-08-23
Release date:2007-11-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Molecular Cloning, Characterisation and Ligand- Bound Structure of an Azoreductase from Pseudomonas Aeruginosa
J.Mol.Biol., 373, 2007

225399

数据于2024-09-25公开中

PDB statisticsPDBj update infoContact PDBjnumon