PDB: 73501 resultsInfo pagesStatus searchChemie searchBIRD

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4MEL	Crystal Structure of the human USP11 DUSP-UBL domains Descriptor: Ubiquitin carboxyl-terminal hydrolase 11 Authors: Harper, S, Gratton, H.E, Cornaciu, I, Oberer, M, Scott, D.J, Emsley, J, Dreveny, I. Deposit date: 2013-08-27 Release date: 2014-05-07 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.899 Å) Cite: Structure and Catalytic Regulatory Function of Ubiquitin Specific Protease 11 N-Terminal and Ubiquitin-like Domains. Biochemistry, 53, 2014
6BV9	Structure of proteinaceous RNase P 1 (PRORP1) from A. thaliana after overnight soak with juglone Descriptor: 5-hydroxynaphthalene-1,4-dione, CHLORIDE ION, Proteinaceous RNase P 1, ... Authors: Karasik, A, Wu, N, Fierke, C.A, Koutmos, M. Deposit date: 2017-12-12 Release date: 2019-06-12 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Inhibition of protein-only RNase P with Gambogic acid and Juglone To Be Published
8K0F	Human collagen prolyl processing enzyme complex, P3H1/CRTAP/PPIB heterotrimer, in its apo state Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cartilage-associated protein, FE (III) ION, ... Authors: Li, W, Peng, J, Yao, D, Rao, B, Xia, Y, Wang, Q, Li, S, Cao, M, Shen, Y, Ma, P, Liao, R, Qin, A, Zhao, J, Cao, Y. Deposit date: 2023-07-08 Release date: 2024-09-18 Method: ELECTRON MICROSCOPY (3.37 Å) Cite: The structural basis for the collagen processing by human P3H1/CRTAP/PPIB ternary complex. Nat Commun, 15, 2024
6BV6	Structure of proteinaceous RNase P 1 (PRORP1) from A. thaliana after 3-hour soak with juglone Descriptor: 5-hydroxynaphthalene-1,4-dione, Proteinaceous RNase P 1, chloroplastic/mitochondrial, ... Authors: Karasik, A, Wu, N, Fierke, C.A, Koutmos, M. Deposit date: 2017-12-12 Release date: 2019-06-12 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Inhibition of protein-only RNase P with Gambogic acid and Juglone To Be Published
5JYF	Structures of Streptococcus agalactiae GBS GAPDH in different enzymatic states Descriptor: Glyceraldehyde-3-phosphate dehydrogenase Authors: Schormann, N, Chattopadhyay, D. Deposit date: 2016-05-13 Release date: 2016-12-21 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.62 Å) Cite: Crystal Structures of Group B Streptococcus Glyceraldehyde-3-Phosphate Dehydrogenase: Apo-Form, Binary and Ternary Complexes. PLoS ONE, 11, 2016
5JY6	Structures of Streptococcus agalactiae GBS GAPDH in different enzymatic states Descriptor: Glyceraldehyde-3-phosphate dehydrogenase, MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE Authors: Schormann, N, Chattopadhyay, D. Deposit date: 2016-05-13 Release date: 2016-12-21 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal Structures of Group B Streptococcus Glyceraldehyde-3-Phosphate Dehydrogenase: Apo-Form, Binary and Ternary Complexes. PLoS ONE, 11, 2016
6BV5	Structure of proteinaceous RNase P 1 (PRORP1) from A. thaliana after 45-minute soak with juglone Descriptor: 5-hydroxynaphthalene-1,4-dione, CHLORIDE ION, MANGANESE (II) ION, ... Authors: Karasik, A, Wu, N, Fierke, C.A, Koutmos, M. Deposit date: 2017-12-12 Release date: 2019-06-12 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Inhibition of protein-only RNase P with Gambogic acid and Juglone To Be Published
1DD5	CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA RIBOSOME RECYCLING FACTOR, RRF Descriptor: ACETIC ACID, RIBOSOME RECYCLING FACTOR Authors: Selmer, M, Al-Karadaghi, S, Hirokawa, G, Kaji, A, Liljas, A. Deposit date: 1999-11-08 Release date: 1999-12-22 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Crystal structure of Thermotoga maritima ribosome recycling factor: a tRNA mimic. Science, 286, 1999
6BV8	Structure of proteinaceous RNase P 1 (PRORP1) from A. thaliana complexed with Mn after 3-hour soak with juglone Descriptor: 5-hydroxynaphthalene-1,4-dione, CHLORIDE ION, MANGANESE (II) ION, ... Authors: Karasik, A, Wu, N, Fierke, C.A, Koutmos, M. Deposit date: 2017-12-12 Release date: 2019-06-12 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Inhibition of protein-only RNase P with Gambogic acid and Juglone To Be Published
4K25	Crystal Structure of yeast Qri7 homodimer Descriptor: CALCIUM ION, Probable tRNA threonylcarbamoyladenosine biosynthesis protein QRI7, mitochondrial, ... Authors: Neculai, D, Wan, L, Mao, D.Y, Sicheri, F. Deposit date: 2013-04-08 Release date: 2013-05-08 Last modified: 2013-08-07 Method: X-RAY DIFFRACTION (2.88 Å) Cite: Reconstitution and characterization of eukaryotic N6-threonylcarbamoylation of tRNA using a minimal enzyme system. Nucleic Acids Res., 41, 2013
2YRU	Solution structure of mouse Steroid receptor RNA activator 1 (SRA1) protein Descriptor: Steroid receptor RNA activator 1 Authors: Nameki, N, Saito, K, Koshiba, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-04-03 Release date: 2008-04-08 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of mouse Steroid receptor RNA activator 1 (SRA1) protein To be Published
5OXS	Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R5 oligosaccharide Descriptor: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-glucopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-4,7-anhydro-3-deoxy-D-gluco-oct-2-ulosonic acid Authors: Shrive, A.K, Greenhough, T.J. Deposit date: 2017-09-07 Release date: 2018-06-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structural definition of hSP-D recognition of Salmonella enterica LPS inner core oligosaccharides reveals alternative binding modes for the same LPS. PLoS ONE, 13, 2018
4UZE	R66A mutant of FAD synthetase from Corynebacterium ammoniagenes Descriptor: PYROPHOSPHATE, RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF, SULFATE ION Authors: Martinez-Julvez, M, Herguedas, B, Milagros, M. Deposit date: 2014-09-05 Release date: 2015-04-08 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.34 Å) Cite: Quaternary Organization in a Bifunctional Prokaryotic Fad Synthetase: Involvement of an Arginine at its Adenylyltransferase Module on the Riboflavin Kinase Activity. Biochim.Biophys.Acta, 1854, 2015
8K17	Human collagen prolyl processing enzyme complex, P3H1/CRTAP/PPIB heterotrimer, bound to collagen alpha-1(I) chain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cartilage-associated protein, FE (III) ION, ... Authors: Li, W, Peng, J, Yao, D, Rao, B, Xia, Y, Wang, Q, Li, S, Cao, M, Shen, Y, Ma, P, Liao, R, Qin, A, Zhao, J, Cao, Y. Deposit date: 2023-07-10 Release date: 2024-09-18 Method: ELECTRON MICROSCOPY (3.18 Å) Cite: The structural basis for the collagen processing by human P3H1/CRTAP/PPIB ternary complex. Nat Commun, 15, 2024
8KC9	Human collagen prolyl processing enzyme complex, P3H1/CRTAP/PPIB heterotrimer, bound to cyclosporin A Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cartilage-associated protein, DSN-MLE-MLE-MVA-BMT-ABA-SAR-MLE-VAL-MLE-ALA, ... Authors: Li, W, Peng, J, Yao, D, Rao, B, Xia, Y, Wang, Q, Li, S, Cao, M, Shen, Y, Ma, P, Liao, R, Qin, A, Zhao, J, Cao, Y. Deposit date: 2023-08-06 Release date: 2024-09-18 Method: ELECTRON MICROSCOPY (3.75 Å) Cite: The structural basis for the collagen processing by human P3H1/CRTAP/PPIB ternary complex. Nat Commun, 15, 2024
8K0M	Human collagen prolyl processing enzyme complex, P3H1/CRTAP/PPIB heterotrimer, bound to 2-oxoglutarate Descriptor: 2-OXOGLUTARIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, Cartilage-associated protein, ... Authors: Li, W, Peng, J, Yao, D, Rao, B, Xia, Y, Wang, Q, Li, S, Cao, M, Shen, Y, Ma, P, Liao, R, Qin, A, Zhao, J, Cao, Y. Deposit date: 2023-07-09 Release date: 2024-09-18 Method: ELECTRON MICROSCOPY (3.17 Å) Cite: The structural basis for the collagen processing by human P3H1/CRTAP/PPIB ternary complex. Nat Commun, 15, 2024
5OXR	Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R7 oligosaccharide Descriptor: CALCIUM ION, L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-4,7-anhydro-3-deoxy-D-gluco-oct-2-ulosonic acid, Pulmonary surfactant-associated protein D Authors: Shrive, A.K, Greenhough, T.J. Deposit date: 2017-09-07 Release date: 2018-06-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structural definition of hSP-D recognition of Salmonella enterica LPS inner core oligosaccharides reveals alternative binding modes for the same LPS. PLoS ONE, 13, 2018
1Z30	NMR structure of the apical part of stemloop D from cloverleaf 1 of bovine enterovirus 1 RNA Descriptor: 5'-R(*GP*GP*CP*GP*UP*UP*CP*GP*UP*UP*AP*GP*AP*AP*CP*GP*UP*C)-3' Authors: Ihle, Y, Ohlenschlager, O, Duchardt, E, Ramachandran, R, Gorlach, M. Deposit date: 2005-03-10 Release date: 2005-04-26 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: A novel cGUUAg tetraloop structure with a conserved yYNMGg-type backbone conformation from cloverleaf 1 of bovine enterovirus 1 RNA Nucleic Acids Res., 33, 2005
3E5Y	Crystal structure of TrmH family RNA methyltransferase from Burkholderia pseudomallei Descriptor: TrmH family RNA methyltransferase Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2008-08-14 Release date: 2008-08-26 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structure of TrmH family RNA methyltransferase from Burkholderia pseudomallei To be Published
1K4H	CRYSTAL STRUCTURE OF TRNA-GUANINE TRANSGLYCOSYLASE (TGT) COMPLEXED WITH 2,6-Diamino-8-propylsulfanylmethyl-3H-quinazoline-4-one Descriptor: 2,6-DIAMINO-8-PROPYLSULFANYLMETHYL-3H-QUINAZOLINE-4-ONE, TRNA-GUANINE-TRANSGLYCOSYLASE, ZINC ION Authors: Brenk, R, Meyer, E.A, Castellano, R.K, Furler, M, Stubbs, M.T, Klebe, G, Diederich, F. Deposit date: 2001-10-08 Release date: 2002-04-24 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.8 Å) Cite: De novo design, synthesis, and in vitro evaluation of inhibitors for prokaryotic tRNA-guanine transglycosylase: a dramatic sulfur effect on binding affinity. Chembiochem, 3, 2002
4UZF	R66E mutant of FAD synthetase from Corynebacterium ammoniagenes Descriptor: PYROPHOSPHATE, RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF, SULFATE ION Authors: Martinez-Julvez, M, Herguedas, B, Milagros, M. Deposit date: 2014-09-05 Release date: 2015-04-08 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.52 Å) Cite: Quaternary Organization in a Bifunctional Prokaryotic Fad Synthetase: Involvement of an Arginine at its Adenylyltransferase Module on the Riboflavin Kinase Activity. Biochim.Biophys.Acta, 1854, 2015
3FS0	Class II ligase ribozyme product-template duplex, structure 2 Descriptor: 5'-R(*CP*CP*AP*GP*UP*CP*GP*GP*AP*AP*C)-3', 5'-R(*GP*GP*UP*GP*AP*GP*GP*CP*UP*G)-3', MAGNESIUM ION Authors: Pitt, J.N, Ferre-D'Amare, A.R. Deposit date: 2009-01-08 Release date: 2009-02-24 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure-guided engineering of the regioselectivity of RNA ligase ribozymes. J.Am.Chem.Soc., 131, 2009
3FTM	Class II ligase ribozyme product-template duplex, structure 1 Descriptor: 5'-R(*CP*CP*AP*GP*UP*CP*GP*GP*AP*AP*CP*A)-3', 5'-R(*GP*UP*GP*UP*GP*AP*GP*GP*CP*UP*G)-3', MAGNESIUM ION, ... Authors: Pitt, J.N, Ferre-D'Amare, A.R. Deposit date: 2009-01-13 Release date: 2009-02-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure-guided engineering of the regioselectivity of RNA ligase ribozymes. J.Am.Chem.Soc., 131, 2009
4LJM	Crystal structure of C-terminal RNA recognition motif of human ETR3 Descriptor: CUGBP Elav-like family member 2 Authors: Kashyap, M, Sharma, A, Yogavel, M, Bhavesh, N.S. Deposit date: 2013-07-05 Release date: 2014-07-09 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structure of C-terminal RNA recognition motif of human ETR3 To be Published
1K4G	CRYSTAL STRUCTURE OF TRNA-GUANINE TRANSGLYCOSYLASE (TGT) COMPLEXED WITH 2,6-DIAMINO-8-(1H-IMIDAZOL-2-YLSULFANYLMETHYL)-3H-QUINAZOLINE-4-ONE Descriptor: 2,6-DIAMINO-8-(1H-IMIDAZOL-2-YLSULFANYLMETHYL)-3H-QUINAZOLINE-4-ONE, TRNA-GUANINE TRANSGLYCOSYLASE, ZINC ION Authors: Brenk, R, Meyer, E.A, Castellano, R.K, Furler, M, Stubbs, M.T, Klebe, G, Diederich, F. Deposit date: 2001-10-08 Release date: 2002-04-24 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.7 Å) Cite: De novo design, synthesis, and in vitro evaluation of inhibitors for prokaryotic tRNA-guanine transglycosylase: a dramatic sulfur effect on binding affinity. ChemBioChem, 3, 2002

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