Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5HZL
DownloadVisualize
BU of 5hzl by Molmil
Secreted Internalin-like protein Lmo2445 from Listeria monocytogenes
Descriptor: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, CALCIUM ION, Lmo2445 protein
Authors:Light, S.H, Minasov, G, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-02-02
Release date:2016-02-17
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Secreted Internalin-like protein Lmo2445 from Listeria monocytogenes
To Be Published
6Y4L
DownloadVisualize
BU of 6y4l by Molmil
Crystal structure of human ER membrane protein complex subunits EMC2 and EMC9
Descriptor: 1,2-ETHANEDIOL, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Hegde, R.S, O'Donnell, J.P.
Deposit date:2020-02-21
Release date:2020-05-27
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The architecture of EMC reveals a path for membrane protein insertion.
Elife, 9, 2020
8GZB
DownloadVisualize
BU of 8gzb by Molmil
SARS-CoV-2 3CLpro
Descriptor: 1,2-ETHANEDIOL, 2-(4-chlorophenyl)-1,3,4-oxadiazole, 3C-like proteinase nsp5
Authors:Wang, F, Cen, Y.X, Tian, P.
Deposit date:2022-09-26
Release date:2023-09-27
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Nature-inspired catalytic asymmetric rearrangement of cyclopropylcarbinyl cation.
Sci Adv, 9, 2023
8A0F
DownloadVisualize
BU of 8a0f by Molmil
Crystal structure of human deoxyhypusine synthase variant K329A in complex with NAD and SPD
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, 1,2-ETHANEDIOL, Deoxyhypusine synthase, ...
Authors:Wator, E, Wilk, P, Grudnik, P.
Deposit date:2022-05-27
Release date:2023-04-05
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Cryo-EM structure of human eIF5A-DHS complex reveals the molecular basis of hypusination-associated neurodegenerative disorders.
Nat Commun, 14, 2023
4TYH
DownloadVisualize
BU of 4tyh by Molmil
Ternary complex of P38 and MK2 with a P38 inhibitor
Descriptor: MAP kinase-activated protein kinase 2, Mitogen-activated protein kinase 14, N-[5-(dimethylsulfamoyl)-2-methylphenyl]-1-phenyl-5-propyl-1H-pyrazole-4-carboxamide
Authors:Cumming, J.G, Debreczeni, J.E, Edfeldt, F, Evertsson, F, Harrison, M, Holdgate, G, James, M, Lamont, S, Oldham, K, Sullivan, J.E, Wells, S.
Deposit date:2014-07-08
Release date:2015-07-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Discovery of substrate selective, ATP-competitive P38 alpha MAP kinase inhibitors
To Be Published
6GOY
DownloadVisualize
BU of 6goy by Molmil
Structure of mEos4b in the green fluorescent state
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:De Zitter, E, Adam, V, Byrdin, M, Van Meervelt, L, Dedecker, P, Bourgeois, D.
Deposit date:2018-06-04
Release date:2019-05-22
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Mechanistic investigation of mEos4b reveals a strategy to reduce track interruptions in sptPALM.
Nat.Methods, 16, 2019
7B91
DownloadVisualize
BU of 7b91 by Molmil
Structure of a minimal SF3B core in complex with pladienolide D (form I)
Descriptor: PHD finger-like domain-containing protein 5A, Splicing factor 3B subunit 1, Splicing factor 3B subunit 3, ...
Authors:Cretu, C, Pena, V.
Deposit date:2020-12-13
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of intron selection by U2 snRNP in the presence of covalent inhibitors.
Nat Commun, 12, 2021
9N26
DownloadVisualize
BU of 9n26 by Molmil
DNA gyrase complexed with uncleaved DNA and Compound 148 to 1.96 A resolution
Descriptor: DNA (5'-D(*AP*GP*CP*CP*GP*TP*AP*GP*GP*GP*CP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3'), DNA gyrase subunit B fusion with DNA gyrase subunit A, MANGANESE (II) ION, ...
Authors:Bell, C.E, McElroy, C.A, Ratigan, S.C.
Deposit date:2025-01-27
Release date:2025-04-09
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (1.963 Å)
Cite:Structural and Mechanistic Insights into Atypical Bacterial Topoisomerase Inhibitors.
Acs Med.Chem.Lett., 16, 2025
5DVW
DownloadVisualize
BU of 5dvw by Molmil
Structure of minor nucleoprotein V30 from Zaire ebolavirus
Descriptor: 1,2-ETHANEDIOL, Minor nucleoprotein VP30
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2015-09-21
Release date:2015-11-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure of minor nucleoprotein V30 from Zaire ebolavirus
to be published
4U17
DownloadVisualize
BU of 4u17 by Molmil
Swapped dimer of the human Fyn-SH2 domain
Descriptor: 1,2-ETHANEDIOL, PHOSPHATE ION, Tyrosine-protein kinase Fyn
Authors:Garcia-Pino, A, Huculeci, R, Lenaerts, T, van Nuland, N.A.J.
Deposit date:2014-07-15
Release date:2015-07-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Swapped dimer of the human Fyn-SH2 domain
To Be Published
9GON
DownloadVisualize
BU of 9gon by Molmil
Crystal structure of DPP9 in complex with sulphostin
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Sewald, L, Tabak, W.W.A, Fehr, L, Zolg, S, Najdzion, M, Verhoef, C.J.A, Podlesainski, D, Geiss-Friedlander, R, Lammens, A, Kaschani, F, Hellerschmied, D, Huber, R, Kaiser, M.
Deposit date:2024-09-05
Release date:2025-07-16
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Sulphostin-inspired N-phosphonopiperidones as selective covalent DPP8 and DPP9 inhibitors.
Nat Commun, 16, 2025
8D8J
DownloadVisualize
BU of 8d8j by Molmil
Yeast mitochondrial small subunit assembly intermediate (State 1)
Descriptor: 15S ribosomal RNA, 37S ribosomal protein MRP13, mitochondrial, ...
Authors:Burnside, C, Harper, N, Klinge, S.
Deposit date:2022-06-08
Release date:2022-12-21
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Principles of mitoribosomal small subunit assembly in eukaryotes.
Nature, 614, 2023
7ZL5
DownloadVisualize
BU of 7zl5 by Molmil
Azosemide in complex with Carbonic Anhydrase I
Descriptor: Azosemide, Carbonic anhydrase 1, DIMETHYL SULFOXIDE, ...
Authors:Angeli, A, Ferraroni, M.
Deposit date:2022-04-14
Release date:2023-04-26
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.479 Å)
Cite:Sulfonamide diuretic azosemide as an efficient carbonic anhydrase inhibitor
J.Mol.Struct., 1268, 2022
6FJP
DownloadVisualize
BU of 6fjp by Molmil
Adenovirus species 26 knob protein, high resolution, High pH
Descriptor: 1,2-ETHANEDIOL, Fiber, GLYCEROL
Authors:Rizkallah, P.J, Parker, A.L, Baker, A.T.
Deposit date:2018-01-22
Release date:2019-02-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.09 Å)
Cite:Diversity within the adenovirus fiber knob hypervariable loops influences primary receptor interactions.
Biorxiv, 2019
9DCG
DownloadVisualize
BU of 9dcg by Molmil
Crystal Structure of the Thiol:Disulfide Interchange Protein DsbC from Vibrio cholerae
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, FORMIC ACID, ...
Authors:Kim, Y, Maltseva, N, Shatsman, S, Joachimiak, A, Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2024-08-26
Release date:2024-09-04
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Crystal Structure of the Thiol:Disulfide Interchange Protein DsbC from Vibrio cholerae
To Be Published
9IOQ
DownloadVisualize
BU of 9ioq by Molmil
Crystal structure of CapE bound cUA
Descriptor: 3'3'-cUMP-AMP, cUMP-AMP-activated phospholipase
Authors:Gao, A, Wang, J.G.
Deposit date:2024-07-09
Release date:2025-05-21
Last modified:2025-07-23
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:Cyclic-dinucleotide-induced filamentous assembly of phospholipases governs broad CBASS immunity.
Cell, 188, 2025
6RBT
DownloadVisualize
BU of 6rbt by Molmil
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complexe with an adenine derivative
Descriptor: 8-bromanyl-9-(4-bromanylbutyl)purin-6-amine, CITRIC ACID, NAD kinase 1
Authors:Gelin, M, Labesse, G.
Deposit date:2019-04-11
Release date:2020-02-19
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:From Substrate to Fragments to Inhibitor ActiveIn VivoagainstStaphylococcus aureus.
Acs Infect Dis., 6, 2020
1KZ2
DownloadVisualize
BU of 1kz2 by Molmil
Solution structure of the third helix of Antennapedia homeodomain derivative [W6F,W14F]
Descriptor: Antennapedia protein
Authors:Czajlik, A, Mesko, E, Penke, B, Perczel, A.
Deposit date:2002-02-06
Release date:2002-02-20
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Investigation of penetratin peptides. Part 1. The environment dependent conformational properties of penetratin and two of its derivatives.
J.Pept.Sci., 8, 2002
7MLT
DownloadVisualize
BU of 7mlt by Molmil
Crystal structure of ricin A chain in complex with 5-(2-ethylphenyl)thiophene-2-carboxylic acid
Descriptor: 1,2-ETHANEDIOL, 5-(2-ethylphenyl)thiophene-2-carboxylic acid, CHLORIDE ION, ...
Authors:Harijan, R.K, Li, X.P, Cao, B, Augeri, D, Bonanno, J.B, Almo, S.C, Tumer, N.E, Schramm, V.L.
Deposit date:2021-04-29
Release date:2022-02-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Synthesis and Structural Characterization of Ricin Inhibitors Targeting Ribosome Binding Using Fragment-Based Methods and Structure-Based Design.
J.Med.Chem., 64, 2021
8A8K
DownloadVisualize
BU of 8a8k by Molmil
PAP phosphatase from Methanothermococcus thermolithotrophicus refined to 3.1 A
Descriptor: ADENOSINE MONOPHOSPHATE, GLYCEROL, MANGANESE (II) ION, ...
Authors:Jespersen, M, Wagner, T.
Deposit date:2022-06-23
Release date:2023-04-26
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Assimilatory sulfate reduction in the marine methanogen Methanothermococcus thermolithotrophicus.
Nat Microbiol, 8, 2023
6I75
DownloadVisualize
BU of 6i75 by Molmil
Galectin-3C in complex with substituted polyfluoroaryl monothiogalactoside derivative 2
Descriptor: (2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-(4-methylphenyl)sulfanyl-4-[4-[2,3,5,6-tetrakis(fluoranyl)-4-oxidanyl-phenyl]-1,2,3-triazol-1-yl]oxane-3,5-diol, Galectin-3
Authors:Kumar, R, Peterson, K, Nilsson, U.J, Logan, D.T.
Deposit date:2018-11-15
Release date:2019-01-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.171 Å)
Cite:Substituted polyfluoroaryl interactions with an arginine side chain in galectin-3 are governed by steric-, desolvation and electronic conjugation effects.
Org. Biomol. Chem., 17, 2019
6RDH
DownloadVisualize
BU of 6rdh by Molmil
CryoEM structure of Polytomella F-ATP synthase, Rotary substate 1A, composite map
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ASA-10: Polytomella F-ATP synthase associated subunit 10, ...
Authors:Murphy, B.J, Klusch, N, Yildiz, O, Kuhlbrandt, W.
Deposit date:2019-04-12
Release date:2019-07-03
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F 1 -F o coupling.
Science, 364, 2019
8D9N
DownloadVisualize
BU of 8d9n by Molmil
CryoEM structures of bAE1 captured in multiple states.
Descriptor: Anion exchange protein
Authors:Zhekova, H.R, Wang, W.G, Jiang, J.S, Tsirulnikov, K, Muhammad-Khan, G.H, Azimov, R, Abuladze, N, Kao, L, Newman, D, Noskov, S.Y, Tieleman, P, Zhou, Z.H, Pushkin, A, Kurtz, I.
Deposit date:2022-06-10
Release date:2023-01-25
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:CryoEM structures of anion exchanger 1 capture multiple states of inward- and outward-facing conformations.
Commun Biol, 5, 2022
6RDO
DownloadVisualize
BU of 6rdo by Molmil
Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 1C, composite map
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ASA-10: Polytomella F-ATP synthase associated subunit 10, ...
Authors:Murphy, B.J, Klusch, N, Yildiz, O, Kuhlbrandt, W.
Deposit date:2019-04-12
Release date:2019-07-03
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F 1 -F o coupling.
Science, 364, 2019
6RDW
DownloadVisualize
BU of 6rdw by Molmil
Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 1F, composite map
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ASA-10: Polytomella F-ATP synthase associated subunit 10, ...
Authors:Murphy, B.J, Klusch, N, Yildiz, O, Kuhlbrandt, W.
Deposit date:2019-04-12
Release date:2019-07-03
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F 1 -F o coupling.
Science, 364, 2019

244693

数据于2025-11-12公开中

PDB statisticsPDBj update infoContact PDBjnumon