Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7T8R
DownloadVisualize
BU of 7t8r by Molmil
Co-crystal structure of SARS-CoV-2 Mpro C145A with substrate peptide 7/8
Descriptor: 1,2-ETHANEDIOL, 3C-like proteinase, GLYCEROL, ...
Authors:Shaqra, A.M, Schiffer, C.A.
Deposit date:2021-12-16
Release date:2022-06-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Defining the substrate envelope of SARS-CoV-2 main protease to predict and avoid drug resistance.
Nat Commun, 13, 2022
6N6S
DownloadVisualize
BU of 6n6s by Molmil
Crystal structure of ABIN-1 UBAN
Descriptor: TNFAIP3-interacting protein 1
Authors:Rahighi, S, Dikic, I, Wakatsuki, S.
Deposit date:2018-11-27
Release date:2019-07-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Molecular Recognition of M1-Linked Ubiquitin Chains by Native and Phosphorylated UBAN Domains.
J.Mol.Biol., 431, 2019
6N92
DownloadVisualize
BU of 6n92 by Molmil
Methylmalonyl-CoA decarboxylase in complex with 2-nitronate-propionyl-CoA
Descriptor: (2E)-2-(hydroxyimino)propanoic acid, IMIDAZOLE, Methylmalonyl-CoA decarboxylase, ...
Authors:Stunkard, L.M, Dixon, A.D, Huth, T.J, Lohman, J.R.
Deposit date:2018-11-30
Release date:2019-04-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Sulfonate/Nitro Bearing Methylmalonyl-Thioester Isosteres Applied to Methylmalonyl-CoA Decarboxylase Structure-Function Studies.
J. Am. Chem. Soc., 141, 2019
7OTV
DownloadVisualize
BU of 7otv by Molmil
DNA-PKcs in complex with wortmannin
Descriptor: (1S,6BR,9AS,11R,11BR)-9A,11B-DIMETHYL-1-[(METHYLOXY)METHYL]-3,6,9-TRIOXO-1,6,6B,7,8,9,9A,10,11,11B-DECAHYDRO-3H-FURO[4, 3,2-DE]INDENO[4,5-H][2]BENZOPYRAN-11-YL ACETATE, DNA-dependent protein kinase catalytic subunit,DNA-dependent protein kinase catalytic subunit,DNA-PKcs
Authors:Liang, S, Thomas, S.E, Blundell, T.L.
Deposit date:2021-06-10
Release date:2022-01-12
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.24 Å)
Cite:Structural insights into inhibitor regulation of the DNA repair protein DNA-PKcs.
Nature, 601, 2022
9B1I
DownloadVisualize
BU of 9b1i by Molmil
Human urate transporter 1 URAT1 in complex with verinurad
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Solute carrier family 22 member 12, verinurad
Authors:Dai, Y, Lee, C.H.
Deposit date:2024-03-13
Release date:2024-09-18
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Transport mechanism and structural pharmacology of human urate transporter URAT1.
Cell Res., 34, 2024
8UL1
DownloadVisualize
BU of 8ul1 by Molmil
Structure of rsKiiro using SSX after illumination with 0.1 mJ/mm^2 of 405 nm light
Descriptor: GLYCEROL, SULFATE ION, rsKiiro trans structure
Authors:Baxter, J.M, van Thor, J.J.
Deposit date:2023-10-16
Release date:2024-11-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Power Density Titration of Reversible Photoisomerization of a Fluorescent Protein Chromophore in the Presence of Thermally Driven Barrier Crossing Shown by Quantitative Millisecond Serial Synchrotron X-ray Crystallography.
J.Am.Chem.Soc., 146, 2024
9KFU
DownloadVisualize
BU of 9kfu by Molmil
Human FGFR3 in complex with inhibitor F1
Descriptor: (7~{S})-2-azanyl-7-(4-fluorophenyl)-6,7-dihydro-4~{H}-[1,3]thiazolo[4,5-b]pyridin-5-one, COBALT (II) ION, Fibroblast growth factor receptor 3, ...
Authors:Zhang, J, Song, K, Li, M.Y.
Deposit date:2024-11-07
Release date:2025-09-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Electron-density-informed effective and reliable de novo molecular design and optimization with ED2Mol
Nat Mach Intell, 7, 2025
6ZRN
DownloadVisualize
BU of 6zrn by Molmil
Crystal structure of the RLIP76 Ral binding domain mutant (E427S/L429M/Q433L/K440R) in complex with RalB-GMPPNP
Descriptor: GLYCEROL, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Hurd, C, Brear, P, Revell, J, Ross, S, Mott, H, Owen, D.
Deposit date:2020-07-13
Release date:2020-11-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.482 Å)
Cite:Affinity maturation of the RLIP76 Ral binding domain to inform the design of stapled peptides targeting the Ral GTPases.
J.Biol.Chem., 296, 2020
6X7N
DownloadVisualize
BU of 6x7n by Molmil
LnmK in complex with 2-nitronate-propionyl-amino(dethia)-CoA
Descriptor: Bifunctional methylmalonyl-CoA:ACP acyltransferase/decarboxylase, SULFATE ION, [1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylamino]-1-oxidanylidene-propan-2-ylidene]-bis(oxidanidyl)azanium
Authors:Stunkard, L.M, Kick, B.J, Lohman, J.R.
Deposit date:2020-05-30
Release date:2020-06-10
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Structures of LnmK, a Bifunctional Acyltransferase/Decarboxylase, with Substrate Analogues Reveal the Basis for Selectivity and Stereospecificity.
Biochemistry, 60, 2021
8QHQ
DownloadVisualize
BU of 8qhq by Molmil
Crystal structure of human DNPH1 bound to hmdUMP
Descriptor: 1,2-ETHANEDIOL, 2'-deoxynucleoside 5'-phosphate N-hydrolase 1, 5-HYDROXYMETHYLURIDINE-2'-DEOXY-5'-MONOPHOSPHATE
Authors:Rzechorzek, N.J, West, S.C.
Deposit date:2023-09-09
Release date:2023-11-08
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Mechanism of substrate hydrolysis by the human nucleotide pool sanitiser DNPH1.
Nat Commun, 14, 2023
7A6E
DownloadVisualize
BU of 7a6e by Molmil
Nanodisc reconstituted human ABCB1 in complex with MRK16 Fab and tariquidar
Descriptor: CHOLESTEROL, MRK16 Fab-fragment heavy chain, MRK16 Fab-fragment light chain, ...
Authors:Nosol, K, Locher, K.P.
Deposit date:2020-08-25
Release date:2020-10-14
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structures reveal distinct mechanisms of inhibition of the human multidrug transporter ABCB1.
Proc.Natl.Acad.Sci.USA, 117, 2020
9IIO
DownloadVisualize
BU of 9iio by Molmil
J-shaped conformer of amyloid beta (1-40)
Descriptor: Amyloid-beta protein 40
Authors:Burton-Smith, R.N, Murata, K.
Deposit date:2024-06-21
Release date:2025-02-26
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Elucidating the Unique J-Shaped Protomer Structure of Amyloid-beta (1-40) Fibril with Cryo-Electron Microscopy.
Int J Mol Sci, 26, 2025
8XW3
DownloadVisualize
BU of 8xw3 by Molmil
Cryo-EM structure of OSCA1.2-DOPC-1:50-expanded state
Descriptor: Calcium permeable stress-gated cation channel 1
Authors:Zhang, Y, Han, Y.
Deposit date:2024-01-15
Release date:2024-04-10
Last modified:2025-06-25
Method:ELECTRON MICROSCOPY (3.63 Å)
Cite:Mechanical activation opens a lipid-lined pore in OSCA ion channels.
Nature, 628, 2024
8SBM
DownloadVisualize
BU of 8sbm by Molmil
Crystal structure of the wild-type Catalytic ATP-binding domain of Mtb DosS
Descriptor: 1,2-ETHANEDIOL, GAF domain-containing protein, SODIUM ION, ...
Authors:Larson, G, Shi, K, Aihara, H, Bhagi-Damodaran, A.
Deposit date:2023-04-03
Release date:2023-11-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Understanding ATP Binding to DosS Catalytic Domain with a Short ATP-Lid.
Biochemistry, 62, 2023
8XPX
DownloadVisualize
BU of 8xpx by Molmil
The Crystal Structure of PARP12 from Biortus.
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Wang, F, Cheng, W, Lv, Z, Qi, J, Shen, Z.
Deposit date:2024-01-04
Release date:2024-03-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The Crystal Structure of PARP12 from Biortus.
To Be Published
8AWZ
DownloadVisualize
BU of 8awz by Molmil
Crystal structure of Trametes versicolor glutathione transferase Omega 3S in complex with dinitrosyl glutathionyl iron complex (DNGIC)
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, FE (III) ION, ...
Authors:Schwartz, M, Didierjean, C.
Deposit date:2022-08-30
Release date:2023-03-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.549 Å)
Cite:Structural insights into the interactions of glutathione transferases with a nitric oxide carrier and sodium nitroprusside.
Biochem.Biophys.Res.Commun., 649, 2023
6XJ8
DownloadVisualize
BU of 6xj8 by Molmil
KPC-2 N170A mutant bound to hydrolyzed imipenem at 2.05 A
Descriptor: (2R)-2-[(2S,3R)-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-(2-methanimidamidoethylsulfanyl)-2,3-dihydro-1H-pyrrole -5-carboxylic acid, Carbapenem-hydrolyzing beta-lactamase KPC
Authors:Pemberton, O.A, Chen, Y.
Deposit date:2020-06-23
Release date:2020-12-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:KPC-2 beta-lactamase enables carbapenem antibiotic resistance through fast deacylation of the covalent intermediate.
J.Biol.Chem., 296, 2020
8XS4
DownloadVisualize
BU of 8xs4 by Molmil
Cryo-EM structure of OSCA1.2-DOPC-1:20-contracted1 state
Descriptor: Calcium permeable stress-gated cation channel 1
Authors:Zhang, Y, Han, Y.
Deposit date:2024-01-08
Release date:2024-04-10
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Mechanical activation opens a lipid-lined pore in OSCA ion channels.
Nature, 628, 2024
8XW2
DownloadVisualize
BU of 8xw2 by Molmil
Cryo-EM structure of OSCA1.2-DOPC-1:50-contracted state
Descriptor: Calcium permeable stress-gated cation channel 1
Authors:Zhang, Y, Han, Y.
Deposit date:2024-01-15
Release date:2024-04-10
Last modified:2025-06-25
Method:ELECTRON MICROSCOPY (3.59 Å)
Cite:Mechanical activation opens a lipid-lined pore in OSCA ion channels.
Nature, 628, 2024
6OUK
DownloadVisualize
BU of 6ouk by Molmil
Carbonic Anhydrase II complexed with benzene sulfonamide MB10-580B
Descriptor: (2Z)-2-(hydroxyimino)-2,3-dihydro-1,3-benzoxazole-5-sulfonamide, Carbonic anhydrase 2, GLYCEROL, ...
Authors:Kota, A, McKenna, R.
Deposit date:2019-05-04
Release date:2020-05-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.498 Å)
Cite:Carbonic Anhydrase II complexed with benzene sulfonamide MB10-580B
To Be Published
8XS5
DownloadVisualize
BU of 8xs5 by Molmil
Cryo-EM structure of OSCA1.2-DOPC-1:20-contracted2 state
Descriptor: Calcium permeable stress-gated cation channel 1
Authors:Zhang, Y, Han, Y.
Deposit date:2024-01-08
Release date:2024-04-10
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.33 Å)
Cite:Mechanical activation opens a lipid-lined pore in OSCA ion channels.
Nature, 628, 2024
8EYJ
DownloadVisualize
BU of 8eyj by Molmil
Crystal Structure of uncleaved SARS-CoV-2 Main Protease C145S mutant in complex with Nirmatrelvir
Descriptor: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5
Authors:Noske, G.D, Godoy, A.S, Oliva, G.
Deposit date:2022-10-27
Release date:2022-11-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.738 Å)
Cite:An in-solution snapshot of SARS-COV-2 main protease maturation process and inhibition.
Nat Commun, 14, 2023
5M3T
DownloadVisualize
BU of 5m3t by Molmil
Structural tuning of CD81LEL (space group P64)
Descriptor: 1,2-ETHANEDIOL, CD81 antigen, CHLORIDE ION
Authors:Cunha, E.S, Sfriso, P, Rojas, A.L, Roversi, P, Hospital, A, Orozco, M, Abrescia, N.G.
Deposit date:2016-10-17
Release date:2016-12-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.021 Å)
Cite:Mechanism of Structural Tuning of the Hepatitis C Virus Human Cellular Receptor CD81 Large Extracellular Loop.
Structure, 25, 2017
8XVX
DownloadVisualize
BU of 8xvx by Molmil
Cryo-EM structure of OSCA1.2-DOPC-1:20-expanded state
Descriptor: Calcium permeable stress-gated cation channel 1
Authors:Zhang, Y, Han, Y.
Deposit date:2024-01-15
Release date:2024-04-10
Last modified:2025-06-25
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Mechanical activation opens a lipid-lined pore in OSCA ion channels.
Nature, 628, 2024
8PJ8
DownloadVisualize
BU of 8pj8 by Molmil
FKBP51FK1 F67E/K60Orn (i, i+7) in complex with SAFit1
Descriptor: 2-[3-[(1~{R})-1-[(2~{S})-1-[(2~{S})-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidin-2-yl]carbonyloxy-3-(3,4-dimethoxyphenyl)propyl]phenoxy]ethanoic acid, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Charalampidou, A, Hausch, F.
Deposit date:2023-06-23
Release date:2024-03-06
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Automated Flow Peptide Synthesis Enables Engineering of Proteins with Stabilized Transient Binding Pockets.
Acs Cent.Sci., 10, 2024

244693

数据于2025-11-12公开中

PDB statisticsPDBj update infoContact PDBjnumon