PDB: 45459 resultsInfo pagesStatus searchChemie searchBIRD

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5VXO	Crystal Structure Analysis of human CLYBL in complex with propionyl-CoA Descriptor: 1,2-ETHANEDIOL, Citrate lyase subunit beta-like protein, mitochondrial, ... Authors: Shen, H. Deposit date: 2017-05-23 Release date: 2017-11-01 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.266 Å) Cite: The Human Knockout Gene CLYBL Connects Itaconate to Vitamin B12. Cell, 171, 2017
5VYC	Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. Descriptor: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ... Authors: Lomakin, I.B, Stolboushkina, E.A, Vaidya, A.T, Garber, M.B, Dmitriev, S.E, Steitz, T.A. Deposit date: 2017-05-24 Release date: 2017-07-19 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (6 Å) Cite: Crystal Structure of the Human Ribosome in Complex with DENR-MCT-1. Cell Rep, 20, 2017
4YA1	Yeast 20S proteasome beta2-H116N mutant Descriptor: CHLORIDE ION, MAGNESIUM ION, Probable proteasome subunit alpha type-7, ... Authors: Huber, E.M, Groll, M. Deposit date: 2015-02-17 Release date: 2015-06-17 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Systematic Analyses of Substrate Preferences of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors. J.Am.Chem.Soc., 137, 2015
4Y70	Yeast 20S proteasome in complex with Ac-LAV-ep Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Ac-LAV-ep, CHLORIDE ION, ... Authors: Huber, E.M, Groll, M. Deposit date: 2015-02-13 Release date: 2015-06-17 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Systematic Analyses of Substrate Preferences of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors. J.Am.Chem.Soc., 137, 2015
7XY4	Cryo-EM structure of SARS-CoV-2 spike in complex with VHH21 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, VHH21 Authors: Cao, D, Fan, X, Zhang, X. Deposit date: 2022-05-31 Release date: 2023-09-13 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Identification of nano-abzymes to catalyze the spike-trimer of SARS-CoV-2 To Be Published
7XY3	Cryo-EM structure of SARS-CoV-2 spike in complex with VHH14 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, VHH14 Authors: Cao, D, Fan, X, Zhang, X. Deposit date: 2022-05-31 Release date: 2023-09-13 Method: ELECTRON MICROSCOPY (4.6 Å) Cite: Identification of nano-abzymes to catalyze the spike-trimer of SARS-CoV-2 To Be Published
4Y8P	Yeast 20S proteasome beta7-delta7_Cter mutant in complex with Ac-PAL-ep Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Ac-PAL-ep, CHLORIDE ION, ... Authors: Huber, E.M, Groll, M. Deposit date: 2015-02-16 Release date: 2015-06-17 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Systematic Analyses of Substrate Preferences of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors. J.Am.Chem.Soc., 137, 2015
6JLJ	XFEL structure of cyanobacterial photosystem II (dark state, dataset1) Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Suga, M, Shen, J.R. Deposit date: 2019-03-06 Release date: 2019-10-16 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.15 Å) Cite: An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser. Science, 366, 2019
7Y0N	SARS-CoV-2 WT Spike in complex with R15 Fab and P14 Nanobody Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of R15-F7, ... Authors: Wang, L. Deposit date: 2022-06-05 Release date: 2023-09-13 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: SARS-CoV-2 WT Spike in complex with R15 Fab and P14 Nanobody To Be Published
4Y9Y	Yeast 20S proteasome beta2-H116E mutant Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, Proteasome subunit alpha type-1, ... Authors: Huber, E.M, Groll, M. Deposit date: 2015-02-17 Release date: 2015-06-17 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Systematic Analyses of Substrate Preferences of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors. J.Am.Chem.Soc., 137, 2015
4YB7	Adenosine triphosphate phosphoribosyltransferase from Campylobacter jejuni in complex with ATP Descriptor: ACETIC ACID, ADENOSINE-5'-TRIPHOSPHATE, ATP phosphoribosyltransferase, ... Authors: Mittelstaedt, G, Moggre, G.-J, Parker, E.J. Deposit date: 2015-02-18 Release date: 2016-03-09 Last modified: 2018-09-05 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Campylobacter jejuni adenosine triphosphate phosphoribosyltransferase is an active hexamer that is allosterically controlled by the twisting of a regulatory tail. Protein Sci., 25, 2016
6JOV	Crystal structure of a hypothetical Fe Superoxide dismutase Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, FE (III) ION, ... Authors: Bose, S, Purushothaman, S.S, Subramanian, R. Deposit date: 2019-03-23 Release date: 2020-01-29 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.941 Å) Cite: Crystal structure of a hypothetical Fe Superoxide dismutase To Be Published
5WNQ	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus Descriptor: 16S Ribosomal RNA rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: DeMirci, H. Deposit date: 2017-08-01 Release date: 2018-02-21 Last modified: 2020-10-21 Method: X-RAY DIFFRACTION (3.5 Å) Cite: 2'-O-methylation in mRNA disrupts tRNA decoding during translation elongation. Nat. Struct. Mol. Biol., 25, 2018
7UWW	Sas6 with alpha-cyclodextrin Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Cyclohexakis-(1-4)-(alpha-D-glucopyranose), ... Authors: Photenhauer, A.L, Koropatkin, N.M. Deposit date: 2022-05-04 Release date: 2023-06-14 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.61 Å) Cite: The Ruminococcus bromii amylosome protein Sas6 binds single and double helical alpha-glucan structures in starch. Nat.Struct.Mol.Biol., 31, 2024
6JCV	Cryo-EM structure of Sulfolobus solfataricus ketol-acid reductoisomerase (Sso-KARI) with Mg2+ at pH7.5 Descriptor: MAGNESIUM ION, Putative ketol-acid reductoisomerase 2 Authors: Chen, C.Y, Chang, Y.C, Lin, K.F, Huang, C.H, Lin, B.L, Ko, T.P, Hsieh, D.L, Tsai, M.D. Deposit date: 2019-01-30 Release date: 2019-04-17 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (2.92 Å) Cite: Use of Cryo-EM To Uncover Structural Bases of pH Effect and Cofactor Bispecificity of Ketol-Acid Reductoisomerase. J. Am. Chem. Soc., 141, 2019
7UKM	Cryo-EM structure of Antibody 12-19 in complex with prefusion SARS-CoV-2 Spike glycoprotein Descriptor: 12-19 Fab Heavy Chain, 12-19 Fab Light Chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Casner, R.G, Shapiro, L. Deposit date: 2022-04-01 Release date: 2023-10-04 Method: ELECTRON MICROSCOPY (3.03 Å) Cite: Structure and Neutralization of two quaternary SARS-CoV-2 omicron antibodies To Be Published
7UKL	Cryo-EM structure of Antibody 12-16 in complex with prefusion SARS-CoV-2 Spike glycoprotein Descriptor: 12-16 Fab Heavy Chain, 12-16 Fab Light Chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Casner, R.G, Shapiro, L. Deposit date: 2022-04-01 Release date: 2023-10-04 Last modified: 2023-10-25 Method: ELECTRON MICROSCOPY (3.09 Å) Cite: Antibodies targeting a quaternary site on SARS-CoV-2 spike glycoprotein prevent viral receptor engagement by conformational locking. Immunity, 56, 2023
7UHC	SARS-CoV-2 spike in complex with AHB2-2GS-SB175 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Multivalent miniprotein inhibitor AHB2-2GS-SB175, ... Authors: Park, Y.J, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D. Deposit date: 2022-03-26 Release date: 2022-06-08 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Multivalent designed proteins neutralize SARS-CoV-2 variants of concern and confer protection against infection in mice. Sci Transl Med, 14, 2022
5WXU	11S globulin from Wrightia tinctoria reveals auxin binding site Descriptor: 11S globulin, 1H-INDOL-3-YLACETIC ACID, CITRATE ANION, ... Authors: Kumar, P, Kesari, P, Dhindwal, S, Kumar, P. Deposit date: 2017-01-09 Release date: 2018-05-23 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.7 Å) Cite: A novel function for globulin in sequestering plant hormone: Crystal structure of Wrightia tinctoria 11S globulin in complex with auxin. Sci Rep, 7, 2017
6JLK	XFEL structure of cyanobacterial photosystem II (1F state, dataset1) Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Suga, M, Shen, J.R. Deposit date: 2019-03-06 Release date: 2019-10-16 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.15 Å) Cite: An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser. Science, 366, 2019
6JLM	XFEL structure of cyanobacterial photosystem II (dark state, dataset2) Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Suga, M, Shen, J.R. Deposit date: 2019-03-06 Release date: 2019-10-16 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.35 Å) Cite: An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser. Science, 366, 2019
7V76	Cryo-EM structure of SARS-CoV-2 S-Beta variant (B.1.351), uncleavable form, one RBD-up conformation Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Yang, T.J, Yu, P.Y, Chang, Y.C, Hsu, S.T.D. Deposit date: 2021-08-21 Release date: 2021-10-06 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Cryo-EM structure of SARS-CoV-2 S-Beta variant (B.1.351), uncleavable form, one RBD-up conformation To Be Published
7V7T	Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2), two RBD-up conformation 1 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Yang, T.J, Yu, P.Y, Chang, Y.C, Hsu, S.T.D. Deposit date: 2021-08-21 Release date: 2021-10-06 Method: ELECTRON MICROSCOPY (3 Å) Cite: Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2), two RBD-up conformation 1 To Be Published
6HVQ	The structure of Dps from Listeria innocua soaked before soaking experiments with Zn, Co and La Descriptor: DNA protection during starvation protein, LANTHANUM (III) ION Authors: Zeth, K, Okuda, M. Deposit date: 2018-10-11 Release date: 2019-09-04 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Metal Positions and Translocation Pathways of the Dodecameric Ferritin-like Protein Dps. Inorg.Chem., 58, 2019
7V7Z	Cryo-EM structure of SARS-CoV-2 S-Beta variant (B.1.351) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2,Green fluorescent protein, ... Authors: Yang, T.J, Yu, P.Y, Chang, Y.C, Hsu, S.T.D. Deposit date: 2021-08-22 Release date: 2021-10-06 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Cryo-EM structure of SARS-CoV-2 S-Beta variant (B.1.351) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form To Be Published

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