Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5DSD
DownloadVisualize
BU of 5dsd by Molmil
The crystal structure of the C-terminal domain of Ebola (Bundibugyo) nucleoprotein
Descriptor: CHLORIDE ION, GLYCEROL, Nucleoprotein
Authors:Baker, L, Handing, K.B, Utepbergenov, D, Derewenda, U, Derewenda, Z.S.
Deposit date:2015-09-17
Release date:2015-09-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Molecular architecture of the nucleoprotein C-terminal domain from the Ebola and Marburg viruses.
Acta Crystallogr D Struct Biol, 72, 2016
3H11
DownloadVisualize
BU of 3h11 by Molmil
Zymogen caspase-8:c-FLIPL protease domain complex
Descriptor: CASP8 and FADD-like apoptosis regulator, Caspase-8, IETD aldehyde inhibitor
Authors:Jeffrey, P.D, Yu, J.W, Shi, Y.
Deposit date:2009-04-10
Release date:2009-04-28
Last modified:2021-10-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mechanism of procaspase-8 activation by c-FLIPL.
Proc.Natl.Acad.Sci.USA, 106, 2009
4IDA
DownloadVisualize
BU of 4ida by Molmil
Structure of the Fragaria x ananassa enone oxidoreductase in its apo form
Descriptor: 1,2-ETHANEDIOL, Ripening-induced protein, SULFATE ION
Authors:Schiefner, A, Skerra, A.
Deposit date:2012-12-12
Release date:2013-04-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for the enzymatic formation of the key strawberry flavor compound 4-hydroxy-2,5-dimethyl-3(2H)-furanone
J.Biol.Chem., 288, 2013
2G4E
DownloadVisualize
BU of 2g4e by Molmil
Crystal structure of transthyretin mutant I84A at neutral pH
Descriptor: Transthyretin
Authors:Pasquato, N, Folli, C, Berni, R, Zanotti, G.
Deposit date:2006-02-22
Release date:2007-01-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Acidic pH-induced conformational changes in amyloidogenic mutant transthyretin.
J.Mol.Biol., 366, 2007
5DTK
DownloadVisualize
BU of 5dtk by Molmil
Fragments bound to the OXA-48 beta-lactamase: Compound 17
Descriptor: 1,2-ETHANEDIOL, 3,5-di(pyridin-4-yl)benzoic acid, Beta-lactamase, ...
Authors:Lund, B.A, Christopeit, T, Leiros, H.-K.S.
Deposit date:2015-09-18
Release date:2016-05-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.60000241 Å)
Cite:Screening and Design of Inhibitor Scaffolds for the Antibiotic Resistance Oxacillinase-48 (OXA-48) through Surface Plasmon Resonance Screening.
J.Med.Chem., 59, 2016
2G5G
DownloadVisualize
BU of 2g5g by Molmil
Cofacial heme binding to ChaN of Campylobacter jejuni
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, putative lipoprotein
Authors:Chan, A.C, Murphy, M.E.
Deposit date:2006-02-22
Release date:2006-10-03
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Cofacial Heme Binding is Linked to Dimerization by a Bacterial Heme Transport Protein.
J.Mol.Biol., 362, 2006
1J1C
DownloadVisualize
BU of 1j1c by Molmil
Binary complex structure of human tau protein kinase I with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Glycogen synthase kinase-3 beta, MAGNESIUM ION
Authors:Aoki, M, Yokota, T, Sugiura, I, Sasaki, C, Hasegawa, T, Okumura, C, Kohno, T, Sugio, S, Matsuzaki, T.
Deposit date:2002-12-03
Release date:2003-12-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural insight into nucleotide recognition in tau-protein kinase I/glycogen synthase kinase 3 beta.
Acta Crystallogr.,Sect.D, 60, 2004
4IJ4
DownloadVisualize
BU of 4ij4 by Molmil
Crystal Structure of a Family GH19 chitinase from Bryum coronatum in complex with (GlcNAc)4
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase A
Authors:Numata, T, Umemoto, N, Ohnuma, T, Fukamizo, T.
Deposit date:2012-12-21
Release date:2014-03-26
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal structure of a "loopless" GH19 chitinase in complex with chitin tetrasaccharide spanning the catalytic center.
Biochim.Biophys.Acta, 1844, 2014
6CBK
DownloadVisualize
BU of 6cbk by Molmil
X-ray structure of NeoB from Streptomyces fradiae in complex with PMP
Descriptor: 1,2-ETHANEDIOL, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Neamine transaminase NeoN, ...
Authors:Thoden, J.B, Dow, G.T, Holden, H.M.
Deposit date:2018-02-03
Release date:2018-03-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The three-dimensional structure of NeoB: An aminotransferase involved in the biosynthesis of neomycin.
Protein Sci., 27, 2018
4K9D
DownloadVisualize
BU of 4k9d by Molmil
X-ray crystal structure of a Glyceraldehyde 3-phosphate dehydrogenase from Brugia malayi bound to the co-factor NAD
Descriptor: 1,2-ETHANEDIOL, Glyceraldehyde-3-phosphate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2013-04-19
Release date:2013-05-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:X-ray crystal structure of a Glyceraldehyde 3-phosphate dehydrogenase from Brugia malayi bound to the co-factor NAD
TO BE PUBLISHED
3H7G
DownloadVisualize
BU of 3h7g by Molmil
Apo-FR with AU ions
Descriptor: CADMIUM ION, Ferritin light chain, GLYCEROL, ...
Authors:Abe, M, Ueno, T, Abe, S, Suzuki, M, Goto, T, Toda, Y, Akita, T, Yamada, Y, Watanabe, Y.
Deposit date:2009-04-27
Release date:2009-09-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Preparation and catalytic reaction of Au/Pd bimetallic nanoparticles in apo-ferritin
Chem.Commun.(Camb.), 32, 2009
2YOL
DownloadVisualize
BU of 2yol by Molmil
West Nile Virus NS2B-NS3 protease in complex with 3,4- dichlorophenylacetyl-Lys-Lys-GCMA
Descriptor: (S)-6-amino-N-((S)-6-amino-1-(((1r,4S)-4-guanidinocyclohexyl)methylamino)-1-oxohexan-2-yl)-2-(2-(3,4-dichlorophenyl)acetamido)hexanamide, CHLORIDE ION, NICKEL (II) ION, ...
Authors:Hammamy, M.Z, Haase, C, Hammami, M, Hilgenfeld, R, Steinmetzer, T.
Deposit date:2012-10-25
Release date:2013-03-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Development and Characterization of New Peptidomimetic Inhibitors of the West Nile Virus Ns2B-Ns3 Protease.
Chemmedchem, 8, 2013
5DVH
DownloadVisualize
BU of 5dvh by Molmil
Structure of the Kunitz-type cysteine protease inhibitor PCPI-3 from potato
Descriptor: CHLORIDE ION, PCPI-3
Authors:Brynda, J, Mishra, M, Mares, M.
Deposit date:2015-09-21
Release date:2016-10-12
Last modified:2017-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the Kunitz-type cysteine protease inhibitor PCPI-3 from potato
To Be Published
3H8O
DownloadVisualize
BU of 3h8o by Molmil
Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system
Descriptor: 5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*(MA7)P*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*TP*AP*TP*AP*AP*TP*AP*CP*A)-3', Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2, ...
Authors:Lu, L, Yi, C, Jian, X, Zheng, Q.
Deposit date:2009-04-29
Release date:2010-03-31
Last modified:2021-10-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked protein-DNA system.
Nucleic Acids Res., 38, 2010
6CB7
DownloadVisualize
BU of 6cb7 by Molmil
CRYSTAL STRUCTURE OF VACCINIA VIRUS A6 N-TERMINUS (SPACE GROUP C2)
Descriptor: NICKEL (II) ION, Protein A6
Authors:Han, Y, Zhang, B, Deng, J.
Deposit date:2018-02-02
Release date:2018-12-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of a lipid-bound viral membrane assembly protein reveals a modality for enclosing the lipid bilayer.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
2GI9
DownloadVisualize
BU of 2gi9 by Molmil
Backbone Conformational Constraints in a Microcrystalline U-15N-Labeled Protein by 3D Dipolar-Shift Solid-State NMR Spectroscopy
Descriptor: Immunoglobulin B1 binding domain of protein G
Authors:Franks, W.T, Wylie, B.J, Stellfox, S.A, Rienstra, C.M.
Deposit date:2006-03-28
Release date:2006-04-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Backbone Conformational Constraints in a Microcrystalline U-15N-Labeled Protein by 3D Dipolar-Shift Solid-State NMR Spectroscopy
J.Am.Chem.Soc., 128, 2006
6CBL
DownloadVisualize
BU of 6cbl by Molmil
x-ray structure of NeoB from Streptomyces fradiae in complex with neamine as an external aldimine
Descriptor: (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2-amino-2,6-dideoxy-6-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-alpha-D-glucopyranoside, CHLORIDE ION, Neamine transaminase NeoN
Authors:Thoden, J.B, Dow, G.T, Holden, H.M.
Deposit date:2018-02-03
Release date:2018-02-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The three-dimensional structure of NeoB: An aminotransferase involved in the biosynthesis of neomycin.
Protein Sci., 27, 2018
6CF3
DownloadVisualize
BU of 6cf3 by Molmil
Ethylene forming enzyme Y306A variant in complex with manganese and 2-oxoglutarate
Descriptor: 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, 2-oxoglutarate-dependent ethylene/succinate-forming enzyme, ...
Authors:Fellner, M, Martinez, S, Hu, J, Hausinger, R.P.
Deposit date:2018-02-13
Release date:2019-02-13
Last modified:2024-04-17
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Structural, Spectroscopic, and Computational Insights from Canavanine-Bound and Two Catalytically Compromised Variants of the Ethylene-Forming Enzyme.
Biochemistry, 2024
5E8I
DownloadVisualize
BU of 5e8i by Molmil
Crystal structure of the DNA binding domain of human transcription factor FLI1 in complex with a 10-mer DNA ACCGGAAGTG
Descriptor: CALCIUM ION, DNA (5'-D(*AP*CP*CP*GP*GP*AP*AP*GP*TP*G)-3'), DNA (5'-D(*CP*AP*CP*TP*TP*CP*CP*GP*GP*T)-3'), ...
Authors:Hou, C, Tsodikov, O.V.
Deposit date:2015-10-14
Release date:2015-12-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Structural Basis for Dimerization and DNA Binding of Transcription Factor FLI1.
Biochemistry, 54, 2015
1J8T
DownloadVisualize
BU of 1j8t by Molmil
Catalytic Domain of Human Phenylalanine Hydroxylase Fe(II)
Descriptor: FE (II) ION, PHENYLALANINE-4-HYDROXYLASE
Authors:Andersen, O.A, Flatmark, T, Hough, E.
Deposit date:2001-05-22
Release date:2002-05-22
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:High resolution crystal structures of the catalytic domain of human phenylalanine hydroxylase in its catalytically active Fe(II) form and binary complex with tetrahydrobiopterin.
J.Mol.Biol., 314, 2001
2YW4
DownloadVisualize
BU of 2yw4 by Molmil
Crystal Structure Analysis of the 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase from TTHB1
Descriptor: 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase
Authors:Kawano, Y, Hashimoto, K, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-19
Release date:2007-10-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Crystal Structure Analysis of the 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase from TTHB1
To be published
6CCM
DownloadVisualize
BU of 6ccm by Molmil
Crystal structure of E.coli Phosphopantetheine Adenylyltransferase (PPAT/CoaD) in complex with 2-((3-bromobenzyl)amino)-5-methyl-[1,2,4]triazolo[1,5-a]pyrimidin-7(4H)-one
Descriptor: 2-{[(3-bromophenyl)methyl]amino}-5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-7(6H)-one, Phosphopantetheine adenylyltransferase, SULFATE ION
Authors:Mamo, M, Appleton, B.A.
Deposit date:2018-02-07
Release date:2018-03-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Fragment-Based Drug Discovery of Inhibitors of Phosphopantetheine Adenylyltransferase from Gram-Negative Bacteria.
J. Med. Chem., 61, 2018
6CCS
DownloadVisualize
BU of 6ccs by Molmil
Crystal structure of E.coli Phosphopantetheine Adenylyltransferase (PPAT/CoaD) in complex with 2-(trifluoromethyl)-1H-benzo[d]imidazol-4-ol
Descriptor: 2-(trifluoromethyl)-1H-benzimidazol-7-ol, Phosphopantetheine adenylyltransferase, SULFATE ION
Authors:Mamo, M, Appleton, B.A.
Deposit date:2018-02-07
Release date:2018-03-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Fragment-Based Drug Discovery of Inhibitors of Phosphopantetheine Adenylyltransferase from Gram-Negative Bacteria.
J. Med. Chem., 61, 2018
2G01
DownloadVisualize
BU of 2g01 by Molmil
Pyrazoloquinolones as Novel, Selective JNK1 inhibitors
Descriptor: 6-CHLORO-9-HYDROXY-1,3-DIMETHYL-1,9-DIHYDRO-4H-PYRAZOLO[3,4-B]QUINOLIN-4-ONE, C-jun-amino-terminal kinase-interacting protein 1, Mitogen-activated protein kinase 8, ...
Authors:Abad-Zapatero, C.
Deposit date:2006-02-10
Release date:2006-04-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Synthesis and SAR of 1,9-dihydro-9-hydroxypyrazolo[3,4-b]quinolin-4-ones as novel, selective c-Jun N-terminal kinase inhibitors.
Bioorg.Med.Chem.Lett., 16, 2006
6CD2
DownloadVisualize
BU of 6cd2 by Molmil
Crystal structure of the PapC usher bound to the chaperone-adhesin PapD-PapG
Descriptor: Chaperone protein PapD, Outer membrane usher protein PapC, PapGII adhesin protein
Authors:Omattage, N.S, Deng, Z, Yuan, P, Hultgren, S.J.
Deposit date:2018-02-07
Release date:2018-10-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Structural basis for usher activation and intramolecular subunit transfer in P pilus biogenesis in Escherichia coli.
Nat Microbiol, 3, 2018

225399

数据于2024-09-25公开中

PDB statisticsPDBj update infoContact PDBjnumon