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6R5I
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BU of 6r5i by Molmil
The crystal structure of the Glycoside Hydrolase BglX from P. aeruginosa
Descriptor: MAGNESIUM ION, Periplasmic beta-glucosidase, SULFATE ION
Authors:Batuecas, M.T, Hermoso, J.A.
Deposit date:2019-03-25
Release date:2020-04-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Catalytic Cycle of Glycoside Hydrolase BglX fromPseudomonas aeruginosaand Its Implications for Biofilm Formation.
Acs Chem.Biol., 15, 2020
6H3G
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BU of 6h3g by Molmil
Alcohol oxidase from Phanerochaete chrysosporium
Descriptor: Alcohol oxidase, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL
Authors:Nguyen, Q.-T, Romero, E, Dijkman, W.P, de Vasconcellos, S.P, Binda, C, Mattevi, A, Fraaije, M.W.
Deposit date:2018-07-18
Release date:2018-10-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-Based Engineering of Phanerochaete chrysosporium Alcohol Oxidase for Enhanced Oxidative Power toward Glycerol.
Biochemistry, 57, 2018
6H6O
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BU of 6h6o by Molmil
UbiJ-SCP2 Ubiquinone synthesis protein
Descriptor: (2S)-2-hydroxybutanedioic acid, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Fyfe, C.D, Legrand, P, Pecqueur, L, Ciccone, L, Lombard, M, Fontecave, M.
Deposit date:2018-07-28
Release date:2019-02-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A Soluble Metabolon Synthesizes the Isoprenoid Lipid Ubiquinone.
Cell Chem Biol, 26, 2019
8BSX
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BU of 8bsx by Molmil
IPNS H270D variant in complex with Fe and ACV after 10 min O2 exposure
Descriptor: FE (III) ION, Isopenicillin N synthase, L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE, ...
Authors:Rabe, P, Schofield, C.J.
Deposit date:2022-11-26
Release date:2023-12-13
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:IPNS H270D variant in complex with Fe and ACV after 10 min O2 exposure
To Be Published
5H2X
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BU of 5h2x by Molmil
Crystal structure of the karyopherin Kap60p bound to the SUMO protease Ulp1p (150-172)
Descriptor: Importin subunit alpha, Ubiquitin-like-specific protease 1
Authors:Hirano, H, Matsuura, Y.
Deposit date:2016-10-18
Release date:2016-12-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of the Karyopherins Kap121p and Kap60p Bound to the Nuclear Pore-Targeting Domain of the SUMO Protease Ulp1p
J. Mol. Biol., 429, 2017
6H4J
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BU of 6h4j by Molmil
Usp25 catalytic domain
Descriptor: CHLORIDE ION, Ubiquitin carboxyl-terminal hydrolase 25
Authors:Klemm, T.A, Sauer, F, Kisker, C.
Deposit date:2018-07-21
Release date:2019-03-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:Differential Oligomerization of the Deubiquitinases USP25 and USP28 Regulates Their Activities.
Mol.Cell, 74, 2019
6KJK
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BU of 6kjk by Molmil
Structure of the N-terminal domain of PorA
Descriptor: N-terminal domain of PorA (28-171)
Authors:Handa, Y, Sato, K, Shoji, M, Nakayama, K, Imada, K.
Deposit date:2019-07-22
Release date:2020-07-22
Last modified:2020-12-16
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:PorA, a conserved C-terminal domain-containing protein, impacts the PorXY-SigP signaling of the type IX secretion system.
Sci Rep, 10, 2020
7MPQ
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BU of 7mpq by Molmil
Bartonella henselae NrnC cleaving pGG in the presence of Mn2+
Descriptor: 5'-phosphorylated GG, GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, ...
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
5VEU
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BU of 5veu by Molmil
Human Cytochrome P450 3A5 (CYP3A5)
Descriptor: Cytochrome P450 3A5, PROTOPORPHYRIN IX CONTAINING FE, RITONAVIR
Authors:Hsu, M.-H, Johnson, E.F.
Deposit date:2017-04-05
Release date:2017-11-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:The X-Ray Crystal Structure of the Human Mono-Oxygenase Cytochrome P450 3A5-Ritonavir Complex Reveals Active Site Differences between P450s 3A4 and 3A5.
Mol. Pharmacol., 93, 2018
6H4V
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BU of 6h4v by Molmil
Crystal structure of human KDM4A in complex with compound 34g
Descriptor: 8-[4-(1-cyclopentylpiperidin-4-yl)pyrazol-1-yl]-3~{H}-pyrido[3,4-d]pyrimidin-4-one, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Le Bihan, Y.V, van Montfort, R.L.M.
Deposit date:2018-07-23
Release date:2019-06-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:C8-substituted pyrido[3,4-d]pyrimidin-4(3H)-ones: Studies towards the identification of potent, cell penetrant Jumonji C domain containing histone lysine demethylase 4 subfamily (KDM4) inhibitors, compound profiling in cell-based target engagement assays.
Eur.J.Med.Chem., 177, 2019
6R7P
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BU of 6r7p by Molmil
Crystal structure of oxidized Aquifex aeolicus NADH-quinone oxidoreductase subunits NuoE and NuoF S96M
Descriptor: CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
Authors:Wohlwend, D, Gnandt, E, Friedrich, T.
Deposit date:2019-03-29
Release date:2019-06-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.22 Å)
Cite:A mechanism to prevent production of reactive oxygen species by Escherichia coli respiratory complex I.
Nat Commun, 10, 2019
6K31
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BU of 6k31 by Molmil
Crystal structure of pyrophosphate-dependent phosphoenolpyruvate carboxykinase (PPi-PEPCK)
Descriptor: AiPEPCK, COBALT (II) ION
Authors:Chiba, Y, Miyakawa, T, Tanokura, M.
Deposit date:2019-05-15
Release date:2019-11-06
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural comparisons of phosphoenolpyruvate carboxykinases reveal the evolutionary trajectories of these phosphodiester energy conversion enzymes.
J.Biol.Chem., 294, 2019
8TQV
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BU of 8tqv by Molmil
Crystal Structure of Mtb Pks13 Thioesterase domain in complex with inhibitor X20403
Descriptor: 4-(2-{(4M)-4-[(6M)-6-(2,5-dimethoxyphenyl)pyridin-3-yl]-1H-1,2,3-triazol-1-yl}ethyl)-N-{[1-(methoxymethyl)cyclopropyl]methyl}-N-methylbenzamide, Polyketide synthase Pks13, SULFATE ION
Authors:Krieger, I.V, Sacchettini, J.C.
Deposit date:2023-08-08
Release date:2024-04-24
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Inhibitors of the Thioesterase Activity of Mycobacterium tuberculosis Pks13 Discovered Using DNA-Encoded Chemical Library Screening.
Acs Infect Dis., 10, 2024
6H57
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BU of 6h57 by Molmil
Crystal structure of S. cerevisiae DEAH-box RNA helicase Dhr1, essential for small ribosomal subunit biogenesis
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Roychowdhury, A, Graille, M.
Deposit date:2018-07-24
Release date:2019-06-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The DEAH-box RNA helicase Dhr1 contains a remarkable carboxyl terminal domain essential for small ribosomal subunit biogenesis.
Nucleic Acids Res., 47, 2019
6C3A
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BU of 6c3a by Molmil
O2-, PLP-dependent L-arginine hydroxylase RohP 4-hydroxy-2-ketoarginine complex
Descriptor: (4S)-5-carbamimidamido-4-hydroxy-2-oxopentanoic acid, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Hedges, J.B, Ryan, K.S.
Deposit date:2018-01-09
Release date:2018-03-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Snapshots of the Catalytic Cycle of an O2, Pyridoxal Phosphate-Dependent Hydroxylase.
ACS Chem. Biol., 13, 2018
7MPT
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BU of 7mpt by Molmil
Brucella melitensis NrnC with bound Mg2+
Descriptor: MAGNESIUM ION, NanoRNase C, PHOSPHATE ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
8TRY
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BU of 8try by Molmil
Crystal Structure of Mtb Pks13 Thioesterase domain in complex with inhibitor X20348
Descriptor: N-{(2S,3S)-4-[3-(dimethylamino)-1,2,4-oxadiazol-5-yl]-3-hydroxy-1-phenylbutan-2-yl}-4-(2-methylbutan-2-yl)benzene-1-sulfonamide, Polyketide synthase Pks13, SULFATE ION
Authors:Krieger, I.V, Sacchettini, J.C.
Deposit date:2023-08-10
Release date:2024-04-24
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Inhibitors of the Thioesterase Activity of Mycobacterium tuberculosis Pks13 Discovered Using DNA-Encoded Chemical Library Screening.
Acs Infect Dis., 10, 2024
6H5V
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BU of 6h5v by Molmil
MamM CTD H264E
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, Magnetosome protein MamM, ...
Authors:Barber-Zucker, S, Zarivach, R.
Deposit date:2018-07-25
Release date:2019-08-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:MamM CTD H264E
To Be Published
6C1V
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BU of 6c1v by Molmil
MBD2 in complex with double-stranded DNA
Descriptor: 12-mer DNA, Methyl-CpG-binding domain protein 2, UNKNOWN ATOM OR ION
Authors:Lei, M, Tempel, W, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2018-01-05
Release date:2018-02-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for the ability of MBD domains to bind methyl-CG and TG sites in DNA.
J. Biol. Chem., 293, 2018
5VDP
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BU of 5vdp by Molmil
Human cyclic GMP-AMP synthase (cGAS) in complex with 2',3'-cGAMP
Descriptor: Cyclic GMP-AMP synthase, SULFATE ION, ZINC ION, ...
Authors:Byrnes, L.J, Hall, J.D.
Deposit date:2017-04-03
Release date:2017-09-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The catalytic mechanism of cyclic GMP-AMP synthase (cGAS) and implications for innate immunity and inhibition.
Protein Sci., 26, 2017
7MPU
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BU of 7mpu by Molmil
Brucella melitensis NrnC bound to pGG
Descriptor: 5'-phosphorylated GG, NanoRNase C, SULFATE ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
6REN
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BU of 6ren by Molmil
Crystal structure of 3fPizza6-SH with Zn2+
Descriptor: 3fPizza6-SH, GLYCEROL, ISOPROPYL ALCOHOL, ...
Authors:Noguchi, H, Clarke, D.E, Gryspeerdt, J.L, Feyter, S.D, Voet, A.R.D.
Deposit date:2019-04-12
Release date:2019-07-31
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Artificial beta-propeller protein-based hydrolases.
Chem.Commun.(Camb.), 55, 2019
6R39
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BU of 6r39 by Molmil
T. brucei FPPS in complex with 1-(carboxymethyl)-1H-benzo[g]indole-2-carboxylic acid
Descriptor: 1-(carboxymethyl)-1H-benzo[g]indole-2-carboxylic acid, Farnesyl pyrophosphate synthase
Authors:Muenzker, L, Petrick, J.K, Schleberger, C, Jahnke, W.
Deposit date:2019-03-19
Release date:2020-04-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Targeting farnesyl pyrophosphate synthase of Trypanosoma cruzi by fragment-based lead discovery
Thesis, 2019
8BST
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BU of 8bst by Molmil
Crystal structure of the kainate receptor GluK3-H523A ligand binding domain in complex with kainate at 2.7A resolution
Descriptor: 3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE, ACETATE ION, CHLORIDE ION, ...
Authors:Venskutonyte, R, Frydenvang, K, Kastrup, J.S.
Deposit date:2022-11-26
Release date:2023-12-13
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Small-molecule positive allosteric modulation of homomeric kainate receptors GluK1-3: development of screening assays and insight into GluK3 structure.
Febs J., 291, 2024
5G4Z
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BU of 5g4z by Molmil
Structural basis for carboxylic acid recognition by a Cache chemosensory domain.
Descriptor: Methyl-accepting chemotaxis sensory transducer with Cache sensor, TRIETHYLENE GLYCOL, UNKNOWN LIGAND
Authors:Brewster, J, McKellar, J.L.O, Newman, J, Peat, T.S, Gerth, M.L.
Deposit date:2016-05-18
Release date:2017-03-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structural basis for ligand recognition by a Cache chemosensory domain that mediates carboxylate sensing in Pseudomonas syringae.
Sci Rep, 6, 2016

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