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4G3Y
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BU of 4g3y by Molmil
Crystal structure of TNF-alpha in complex with Infliximab Fab fragment
Descriptor: Tumor necrosis factor, infliximab Fab H, infliximab Fab L
Authors:Liang, S.Y, Dai, J.X, Guo, Y.J, Lou, Z.Y.
Deposit date:2012-07-15
Release date:2013-03-27
Last modified:2013-08-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for treating tumor necrosis factor alpha (TNFalpha)-associated diseases with the therapeutic antibody infliximab
J.Biol.Chem., 288, 2013
5I4B
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BU of 5i4b by Molmil
Erwinia chrysanthemi L-asparaginase E63Q +S254N mutation + L-Aspartic acid
Descriptor: ASPARTIC ACID, L-asparaginase
Authors:Nguyen, H.A, Lavie, A.
Deposit date:2016-02-11
Release date:2016-07-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Design and Characterization of Erwinia Chrysanthemi l-Asparaginase Variants with Diminished l-Glutaminase Activity.
J.Biol.Chem., 291, 2016
2RVA
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BU of 2rva by Molmil
Solution structure of chitosan-binding module 2 derived from chitosanase/glucanase from Paenibacillus sp. IK-5
Descriptor: Glucanase
Authors:Shinya, S, Nishimura, S, Fukamizo, T.
Deposit date:2015-05-13
Release date:2016-04-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase.
Biochem.J., 473, 2016
2RM8
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BU of 2rm8 by Molmil
The solution structure of phototactic transducer protein HtrII linker region from Natronomonas pharaonis
Descriptor: Sensory rhodopsin II transducer
Authors:Hayashi, K, Sudo, Y, Jee, J, Mishima, M, Hara, H, Kamo, N, Kojima, C.
Deposit date:2007-10-15
Release date:2007-12-04
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural Analysis of the Phototactic Transducer Protein HtrII Linker Region from Natronomonas pharaonis
Biochemistry, 46, 2007
5O6E
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BU of 5o6e by Molmil
Structure of ScPif1 in complex with TTTGGGTT and ADP-AlF4
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase PIF1, CHLORIDE ION, ...
Authors:Lu, K.Y, Chen, W.F, Rety, S, Liu, N.N, Xu, X.G.
Deposit date:2017-06-06
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.345 Å)
Cite:Insights into the structural and mechanistic basis of multifunctional S. cerevisiae Pif1p helicase.
Nucleic Acids Res., 46, 2018
3VX1
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BU of 3vx1 by Molmil
Crystal Structure of alpha-Amylase from Aspergillus oryzae
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Alpha-amylase A type-1/2, CALCIUM ION
Authors:Sugahara, M.
Deposit date:2012-09-06
Release date:2013-09-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of alpha-Amylase from Aspergillus oryzae
To be Published
5A05
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BU of 5a05 by Molmil
Crystal structure of aldose-aldose oxidoreductase from Caulobacter crescentus complexed with maltotriose
Descriptor: ALDOSE-ALDOSE OXIDOREDUCTASE, MALONATE ION, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Taberman, H, Rouvinen, J, Parkkinen, T.
Deposit date:2015-04-17
Release date:2015-10-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.897 Å)
Cite:Structure and Function of Caulobacter Crescentus Aldose-Aldose Oxidoreductase.
Biochem.J., 472, 2015
5IS2
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BU of 5is2 by Molmil
Crystal structure of Mycobacterium avium SerB2 at pH 6.6
Descriptor: MAGNESIUM ION, Phosphoserine phosphatase
Authors:Shree, S, Ramachandran, R.
Deposit date:2016-03-15
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.881 Å)
Cite:Crystal Structure of Mycobacterium avium SerB2 (MAV_3907) at pH 6.6
To be published
4G4B
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BU of 4g4b by Molmil
Room temperature X-ray diffraction study of cisplatin binding to HEWL in DMSO media with NAG after 7 months of crystal storage
Descriptor: CHLORIDE ION, Cisplatin, DIMETHYL SULFOXIDE, ...
Authors:Tanley, S.W.M, Schreurs, A.M.M, Kroon-Batenburg, L.M.J, Helliwell, J.R.
Deposit date:2012-07-16
Release date:2012-11-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Room-temperature X-ray diffraction studies of cisplatin and carboplatin binding to His15 of HEWL after prolonged chemical exposure.
Acta Crystallogr.,Sect.F, 68, 2012
2RSH
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BU of 2rsh by Molmil
Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
Descriptor: ZINC ION, Zinc finger protein ZFAT
Authors:Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
Deposit date:2012-03-07
Release date:2013-03-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
To be Published
4G4G
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BU of 4g4g by Molmil
Crystal structure of recombinant glucuronoyl esterase from Sporotrichum thermophile determined at 1.55 A resolution
Descriptor: 1,2-ETHANEDIOL, 4-O-methyl-glucuronoyl methylesterase, GLYCEROL
Authors:Charavgi, M.D, Dimarogona, M, Topakas, E, Christakopoulos, P, Chrysina, E.D.
Deposit date:2012-07-16
Release date:2013-01-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The structure of a novel glucuronoyl esterase from Myceliophthora thermophila gives new insights into its role as a potential biocatalyst.
Acta Crystallogr.,Sect.D, 69, 2013
4ZSX
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BU of 4zsx by Molmil
Structure of a fusion protein with a helix linker, 2ARH-3-3KAW-2.0
Descriptor: PHOSPHATE ION, Uncharacterized Fusion Protein
Authors:Lai, Y.-T, Yeates, T.O.
Deposit date:2015-05-14
Release date:2015-08-19
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:On the predictability of the orientation of protein domains joined by a spanning alpha-helical linker.
Protein Eng.Des.Sel., 28, 2015
5I4Q
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BU of 5i4q by Molmil
Contact-dependent inhibition system from Escherichia coli NC101 - ternary CdiA/CdiI/EF-Tu complex (domains 2 and 3)
Descriptor: CHLORIDE ION, Contact-dependent inhibitor A, Contact-dependent inhibitor I, ...
Authors:Michalska, K, Stols, L, Eschenfeldt, W, Hayes, C.S, Goulding, C.W, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Structure-Function Analysis of Polymorphic CDI Toxin-Immunity Protein Complexes (UC4CDI)
Deposit date:2016-02-12
Release date:2017-06-28
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of a novel antibacterial toxin that exploits elongation factor Tu to cleave specific transfer RNAs.
Nucleic Acids Res., 45, 2017
5O6S
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BU of 5o6s by Molmil
UbV.B4R, a dimeric ubiquitin variant binding to BIRC4 RING
Descriptor: Polyubiquitin-B
Authors:Gabrielsen, M, Buetow, L, Huang, D.T.
Deposit date:2017-06-07
Release date:2017-11-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A General Strategy for Discovery of Inhibitors and Activators of RING and U-box E3 Ligases with Ubiquitin Variants.
Mol. Cell, 68, 2017
3VRY
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BU of 3vry by Molmil
Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor 4-Amino-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-7-yl-cyclopentane
Descriptor: 4-Amino-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-7-yl-cyclopentane, CALCIUM ION, CHLORIDE ION, ...
Authors:Kuratani, M, Tomabechi, Y, Niwa, H, Handa, N, Yokoyama, S.
Deposit date:2012-04-21
Release date:2013-05-01
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.481 Å)
Cite:A Pyrrolo-Pyrimidine Derivative Targets Human Primary AML Stem Cells in Vivo
Sci Transl Med, 5, 2013
3V8F
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BU of 3v8f by Molmil
Crystal structure of crosslinked GltPh V216C-M385C mutant
Descriptor: ASPARTIC ACID, MERCURY (II) ION, SODIUM ION, ...
Authors:Verdon, G, Boudker, O.
Deposit date:2011-12-22
Release date:2012-02-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Crystal structure of an asymmetric trimer of a bacterial glutamate transporter homolog.
Nat.Struct.Mol.Biol., 19, 2012
2RMJ
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BU of 2rmj by Molmil
Solution structure of RIG-I C-terminal domain
Descriptor: Probable ATP-dependent RNA helicase DDX58
Authors:Takahasi, K, Yoneyama, M, Nihishori, T, Hirai, R, Narita, R, Gale Jr, M, Fujita, T, Inagaki, F.
Deposit date:2007-10-23
Release date:2008-03-25
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Nonself RNA-Sensing Mechanism of RIG-I Helicase and Activation of Antiviral Immune Responses
Mol.Cell, 29, 2008
4G5F
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BU of 4g5f by Molmil
Pantothenate synthetase in complex with racemate (2S)-2,3-DIHYDRO-1,4-BENZODIOXINE-2-CARBOXYLIC ACID and (2R)-2,3-DIHYDRO-1,4-BENZODIOXINE-2-CARBOXYLIC ACID
Descriptor: (2R)-2,3-dihydro-1,4-benzodioxine-2-carboxylic acid, (2S)-2,3-dihydro-1,4-benzodioxine-2-carboxylic acid, 1,2-ETHANEDIOL, ...
Authors:Silvestre, H.L, Blundell, T.L, Abell, C, Ciulli, A.
Deposit date:2012-07-17
Release date:2013-07-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Integrated biophysical approach to fragment screening and validation for fragment-based lead discovery.
Proc.Natl.Acad.Sci.USA, 110, 2013
5A1X
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BU of 5a1x by Molmil
The structure of the COPI coat linkage III
Descriptor: ADP-RIBOSYLATION FACTOR 1, COATOMER SUBUNIT ALPHA, COATOMER SUBUNIT BETA, ...
Authors:Dodonova, S.O, Diestelkoetter-Bachert, P, von Appen, A, Hagen, W.J.H, Beck, R, Beck, M, Wieland, F, Briggs, J.A.G.
Deposit date:2015-05-06
Release date:2015-07-08
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (23 Å)
Cite:Vesicular Transport. A Structure of the Copi Coat and the Role of Coat Proteins in Membrane Vesicle Assembly.
Science, 349, 2015
5I52
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BU of 5i52 by Molmil
Crystal structure of TEM1 beta-lactamase mutant I263N
Descriptor: Beta-lactamase TEM
Authors:Roose, B.W, Dmochowski, I.J.
Deposit date:2016-02-13
Release date:2017-06-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A Structural Basis for129Xe Hyper-CEST Signal in TEM-1 beta-Lactamase.
Chemphyschem, 2018
5O75
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BU of 5o75 by Molmil
Ube4B U-box domain
Descriptor: SULFATE ION, Ubiquitin conjugation factor E4 B
Authors:Gabrielsen, M, Buetow, L, Nakasone, M.A, Huang, D.T.
Deposit date:2017-06-08
Release date:2017-11-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.483 Å)
Cite:A General Strategy for Discovery of Inhibitors and Activators of RING and U-box E3 Ligases with Ubiquitin Variants.
Mol. Cell, 68, 2017
3VS9
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BU of 3vs9 by Molmil
Crystal structure of type III PKS ArsC mutant
Descriptor: SODIUM ION, TETRAETHYLENE GLYCOL, Type III polyketide synthase
Authors:Satou, R, Miyanaga, A, Ozawa, H, Funa, N, Miyazono, K, Tanokura, M, Ohnishi, Y, Horinouchi, S.
Deposit date:2012-04-23
Release date:2013-04-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural basis for cyclization specificity of two Azotobacter type III polyketide synthases: a single amino acid substitution reverses their cyclization specificity
J.Biol.Chem., 288, 2013
2RSK
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BU of 2rsk by Molmil
RNA aptamer against prion protein in complex with the partial binding peptide
Descriptor: RNA (5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3'), partial binding peptide of Major prion protein
Authors:Mashima, T, Nishikawa, F, Kamatari, Y.O, Fujiwara, H, Nishikawa, S, Kuwata, K, Katahira, M.
Deposit date:2012-03-08
Release date:2013-02-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Anti-prion activity of an RNA aptamer and its structural basis
Nucleic Acids Res., 41, 2013
4ZT5
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BU of 4zt5 by Molmil
Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor (2S)-N-(3,5-dichlorobenzyl)-N'-(1H-imidazo[4,5-b]pyridin-2-yl)-2-methylpropane-1,3-diamine (Chem 1655)
Descriptor: (2S)-N-(3,5-dichlorobenzyl)-N'-(1H-imidazo[4,5-b]pyridin-2-yl)-2-methylpropane-1,3-diamine, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Koh, C.-Y, Hol, W.G.J.
Deposit date:2015-05-14
Release date:2016-05-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:5-Fluoroimidazo[4,5-b]pyridine Is a Privileged Fragment That Conveys Bioavailability to Potent Trypanosomal Methionyl-tRNA Synthetase Inhibitors.
Acs Infect Dis., 2, 2016
4G3N
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BU of 4g3n by Molmil
Mycobacterium tuberculosis gyrase type IIA topoisomerase C-terminal domain at 1.4 A resolution
Descriptor: DNA gyrase subunit A
Authors:Darmon, A, Piton, J, Petrella, S, Aubry, A, Mayer, C.
Deposit date:2012-07-15
Release date:2013-08-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Mycobacterium tuberculosis DNA gyrase possesses two functional GyrA-boxes.
Biochem.J., 455, 2013

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