Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5OK2
DownloadVisualize
BU of 5ok2 by Molmil
Structure of the D10N mutant of beta-phosphoglucomutase from Lactococcus lactis inhibited with glucose 6-phosphate and tetrafluoroaluminate to 1.1A resolution.
Descriptor: 1,2-ETHANEDIOL, 6-O-phosphono-beta-D-glucopyranose, Beta-phosphoglucomutase, ...
Authors:Robertson, A.J, Bisson, C.
Deposit date:2017-07-25
Release date:2018-08-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:van der Waals Contact between Nucleophile and Transferring Phosphorus Is Insufficient To Achieve Enzyme Transition-State Architecture
Acs Catalysis, 2018
8BJ3
DownloadVisualize
BU of 8bj3 by Molmil
Crystal structure of Medicago truncatula histidinol-phosphate aminotransferase (HISN6) in complex with histidinol-phosphate
Descriptor: 1,2-ETHANEDIOL, SODIUM ION, [(2~{S})-3-(1~{H}-imidazol-4-yl)-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]propyl] dihydrogen phosphate, ...
Authors:Rutkiewicz, M, Ruszkowski, M.
Deposit date:2022-11-03
Release date:2023-03-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Insights into the substrate specificity, structure, and dynamics of plant histidinol-phosphate aminotransferase (HISN6).
Plant Physiol Biochem., 196, 2023
5OB9
DownloadVisualize
BU of 5ob9 by Molmil
X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RuII(CO)3Cl2(N3-MIM), MIM=methyl-imidazole (crystals grown using ethylene glycol
Descriptor: 1,2-ETHANEDIOL, Lysozyme C, NITRATE ION, ...
Authors:Pontillo, N, Ferraro, G, Merlino, A.
Deposit date:2017-06-26
Release date:2017-07-26
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Ru-Based CO releasing molecules with azole ligands: interaction with proteins and the CO release mechanism disclosed by X-ray crystallography.
Dalton Trans, 46, 2017
6T4E
DownloadVisualize
BU of 6t4e by Molmil
Native C3-like protease from Southampton virus complexed with FMOPL000287a.
Descriptor: Genome polyprotein, ~{N}-[2-(5-fluoranyl-1~{H}-indol-3-yl)ethyl]ethanamide
Authors:Guo, J, Cooper, J.B.
Deposit date:2019-10-13
Release date:2020-08-19
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:In crystallo-screening for discovery of human norovirus 3C-like protease inhibitors.
J Struct Biol X, 4, 2020
5FUL
DownloadVisualize
BU of 5ful by Molmil
Crystal Structure of Mus musculus Protein Arginine Methyltransferase 2 with SAH
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Cura, V, Troffer-Charlier, N, Marechal, N, Bonnefond, L, Cavarelli, J.
Deposit date:2016-01-27
Release date:2016-11-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural studies of protein arginine methyltransferase 2 reveal its interactions with potential substrates and inhibitors.
FEBS J., 284, 2017
5OLE
DownloadVisualize
BU of 5ole by Molmil
X-ray structure of the adduct formed upon reaction of hen egg white lysozyme with a tetranuclear Pt-thiosemicarbazone compound
Descriptor: 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, Lysozyme C, ...
Authors:Ferraro, G, Merlino, A.
Deposit date:2017-07-27
Release date:2018-08-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Reactions of a tetranuclear Pt-thiosemicarbazone complex with model proteins.
J. Inorg. Biochem., 181, 2018
6UCZ
DownloadVisualize
BU of 6ucz by Molmil
Crystal structure of dihydropteroate synthase from Anaplasma phagocytophilum with bound 6-hydroxymethylpterin-monophosphate
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CITRIC ACID, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2019-09-18
Release date:2019-10-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of dihydropteroate synthase from Anaplasma phagocytophilum with bound 6-hydroxymethylpterin-monophosphate
To be Published
6UFV
DownloadVisualize
BU of 6ufv by Molmil
Crystal structure of the CBM3 from Bacillus subtilis at 1.06 angstrom resolution
Descriptor: DI(HYDROXYETHYL)ETHER, Endoglucanase
Authors:Morais, M.A.B, Paiva, J.H, Murakami, M.T.
Deposit date:2019-09-25
Release date:2020-09-30
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:Crystal structure of the CBM3 from Bacillus subtilis at 1.06 angstrom resolution
To Be Published
5BZW
DownloadVisualize
BU of 5bzw by Molmil
Crystal Structure of PCDN-27B, an antibody from the PCDN family of HIV-1 antibodies
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2B3 HIV Antibody heavy chain, 2B3 HIV Antibody light chain, ...
Authors:Garces, F, WILSON, I.A.
Deposit date:2015-06-11
Release date:2016-05-25
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Early Antibody Lineage Diversification and Independent Limb Maturation Lead to Broad HIV-1 Neutralization Targeting the Env High-Mannose Patch.
Immunity, 44, 2016
5AJN
DownloadVisualize
BU of 5ajn by Molmil
Crystal structure of the inactive form of GalNAc-T2 in complex with the glycopeptide MUC5AC-Cys13
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-alpha-D-galactopyranose, MUCIN, ...
Authors:Lira-Navarrete, E, delasRivas, M, Companon, I, Pallares, M.C, Kong, Y, Iglesias-Fernandez, J, Bernardes, G.J.L, Peregrina, J.M, Rovira, C, Bernado, P, Bruscolini, P, Clausen, H, Lostao, A, Corzana, F, Hurtado-Guerrero, R.
Deposit date:2015-02-26
Release date:2015-03-11
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Dynamic Interplay between Catalytic and Lectin Domains of Galnac-Transferases Modulates Protein O-Glycosylation.
Nat.Commun., 6, 2015
6JOM
DownloadVisualize
BU of 6jom by Molmil
Crystal structure of lipoate protein ligase from Mycoplasma hyopneumoniae
Descriptor: 5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY)(HYDROXY)PHOSPHORYL]ADENOSINE, Lipoate--protein ligase
Authors:Zhang, H, Chen, H, Ma, G.
Deposit date:2019-03-22
Release date:2020-03-25
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Functional Identification and Structural Analysis of a New Lipoate Protein Ligase inMycoplasma hyopneumoniae.
Front Cell Infect Microbiol, 10, 2020
8ZKT
DownloadVisualize
BU of 8zkt by Molmil
Structure of Polycystin-1/Polycystin-2 complex with GOF mutations
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Polycystin-1, Polycystin-2
Authors:Chen, M.Y, Su, Q, Shi, Y.G.
Deposit date:2024-05-17
Release date:2025-05-21
Last modified:2025-07-23
Method:ELECTRON MICROSCOPY (3.34 Å)
Cite:Structure of Polycystin-1/Polycystin-2 complex with GOF mutations
To Be Published
8ZKE
DownloadVisualize
BU of 8zke by Molmil
Cryo-EM structure of inward-facing Anhydromuropeptide permease (AmpG) in complex with GlcNAc-1,6-anhMurNAc
Descriptor: (2R)-2-[[(1R,2S,3R,4R,5R)-4-acetamido-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-6,8-dioxabicyclo[3.2.1]octan-3-yl]oxy]propanoic acid, Muropeptide transporter
Authors:Chang, N, Kim, U, Yoo, Y, Kim, H, Cho, H.
Deposit date:2024-05-16
Release date:2025-05-21
Last modified:2025-07-16
Method:ELECTRON MICROSCOPY (3.72 Å)
Cite:Structural and functional insights of AmpG in muropeptide transport and multiple beta-lactam antibiotics resistance.
Nat Commun, 16, 2025
8ZKU
DownloadVisualize
BU of 8zku by Molmil
Structure of Polycystin-1/Polycystin-2 complex with GOF mutations
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Polycystin-1, Polycystin-2
Authors:Chen, M.Y, Su, Q, Shi, Y.G.
Deposit date:2024-05-17
Release date:2025-05-21
Last modified:2025-07-23
Method:ELECTRON MICROSCOPY (3.34 Å)
Cite:Structure of Polycystin-1/Polycystin-2 complex with GOF mutations
To Be Published
8ZNU
DownloadVisualize
BU of 8znu by Molmil
Catalytic antibody T99_C220A_dP95
Descriptor: 1,2-ETHANEDIOL, CACODYLIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:Kobayashi, J, Yoshida, H, Tsuyuguchi, M, Kato, R.
Deposit date:2024-05-28
Release date:2025-05-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and biochemical differences between non-catalytic and catalytic antibodies.
Mabs, 17, 2025
8ZNT
DownloadVisualize
BU of 8znt by Molmil
Catalytic antibody T99_C220A
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Catalytic antibody T99_C220A, ...
Authors:Kobayashi, J, Yoshida, H, Tsuyuguchi, M, Kato, R.
Deposit date:2024-05-28
Release date:2025-05-28
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Structural and biochemical differences between non-catalytic and catalytic antibodies.
Mabs, 17, 2025
6J5L
DownloadVisualize
BU of 6j5l by Molmil
Crystal structure of Trk-A in complex with the Pan-Trk Kinase Inhibitor, compound 10e
Descriptor: High affinity nerve growth factor receptor, N-{2-[({3-[6-(piperazin-1-yl)pyridin-3-yl]-1H-indazol-5-yl}amino)methyl]phenyl}methanesulfonamide
Authors:Kensuke, A, Kazutaka, I.
Deposit date:2019-01-11
Release date:2019-07-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The discovery of novel 3-aryl-indazole derivatives as peripherally restricted pan-Trk inhibitors for the treatment of pain.
Bioorg.Med.Chem.Lett., 29, 2019
5LOM
DownloadVisualize
BU of 5lom by Molmil
Crystal structure of the PBP SocA from Agrobacterium tumefaciens C58 in complex with DFG at 1.5 A resolution
Descriptor: 1,2-ETHANEDIOL, Deoxyfructosyl-amino Acid Transporter Periplasmic Binding Protein, Deoxyfructosylglutamine
Authors:Marty, L, Vigouroux, A, Morera, S.
Deposit date:2016-08-09
Release date:2016-09-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural Basis for High Specificity of Amadori Compound and Mannopine Opine Binding in Bacterial Pathogens.
J.Biol.Chem., 291, 2016
1P3X
DownloadVisualize
BU of 1p3x by Molmil
INTRAMOLECULAR DNA TRIPLEX WITH 1-PROPYNYL DEOXYURIDINE IN THE THIRD STRAND, NMR, 10 STRUCTURES
Descriptor: DNA (5'-D(*(PDU)P*CP*(PDU)P*(DCM)P*(PDU)P*CP*(PDU)P*(PDU))-3'), DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*TP*CP*TP*CP*TP*CP*T)-3')
Authors:Phipps, A.K, Tarkoy, M, Schultze, P, Feigon, J.
Deposit date:1998-02-05
Release date:1998-05-06
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of an intramolecular DNA triplex containing 5-(1-propynyl)-2'-deoxyuridine residues in the third strand.
Biochemistry, 37, 1998
5I80
DownloadVisualize
BU of 5i80 by Molmil
BRD4 in complex with Cpd2 (N,N-dimethyl-3-(6-methyl-7-oxo-6,7-dihydro-1H-pyrrolo[2,3-c]pyridin-4-yl)benzamide)
Descriptor: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, DIMETHYL SULFOXIDE, ...
Authors:Murray, J.M.
Deposit date:2016-02-18
Release date:2016-10-12
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.4501 Å)
Cite:Diving into the Water: Inducible Binding Conformations for BRD4, TAF1(2), BRD9, and CECR2 Bromodomains.
J.Med.Chem., 59, 2016
7Y3Y
DownloadVisualize
BU of 7y3y by Molmil
Crystal structure of BTG13 mutant (T299V)
Descriptor: FE (III) ION, GLYCEROL, questin oxidase BTG13
Authors:Hou, X.D, Fu, K, Rao, Y.J.
Deposit date:2022-06-13
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Discovery of the Biosynthetic Pathway of Beticolin 1 Reveals a Novel Non-Heme Iron-Dependent Oxygenase for Anthraquinone Ring Cleavage.
Angew.Chem.Int.Ed.Engl., 61, 2022
7Y3X
DownloadVisualize
BU of 7y3x by Molmil
Crystal structure of BTG13 mutant (H58F)
Descriptor: FE (III) ION, GLYCEROL, Questin oxidase
Authors:Hou, X.D, Rao, Y.J.
Deposit date:2022-06-13
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Discovery of the Biosynthetic Pathway of Beticolin 1 Reveals a Novel Non-Heme Iron-Dependent Oxygenase for Anthraquinone Ring Cleavage.
Angew.Chem.Int.Ed.Engl., 61, 2022
7Y3W
DownloadVisualize
BU of 7y3w by Molmil
Crystal structure of an questin oxidase (BTG13) from Cercospora sp. JNU001
Descriptor: FE (III) ION, GLYCEROL, questin oxidase
Authors:Hou, X.D, Fu, K, Rao, Y.J.
Deposit date:2022-06-13
Release date:2022-09-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery of the Biosynthetic Pathway of Beticolin 1 Reveals a Novel Non-Heme Iron-Dependent Oxygenase for Anthraquinone Ring Cleavage.
Angew.Chem.Int.Ed.Engl., 61, 2022
7D7K
DownloadVisualize
BU of 7d7k by Molmil
The crystal structure of SARS-CoV-2 papain-like protease in apo form
Descriptor: 1,2-ETHANEDIOL, CAFFEINE, Non-structural protein 3, ...
Authors:Zhao, Y, Sun, L, Yang, H.T, Rao, Z.H.
Deposit date:2020-10-04
Release date:2021-04-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High-throughput screening identifies established drugs as SARS-CoV-2 PLpro inhibitors.
Protein Cell, 12, 2021
4IV5
DownloadVisualize
BU of 4iv5 by Molmil
X-ray crystal structure of a putative aspartate carbamoyltransferase from Trypanosoma cruzi
Descriptor: 1,2-ETHANEDIOL, Aspartate carbamoyltransferase, putative, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2013-01-22
Release date:2013-04-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:X-ray crystal structure of a putative aspartate carbamoyltransferase from Trypanosoma cruzi
TO BE PUBLISHED

243911

건을2025-10-29부터공개중

PDB statisticsPDBj update infoContact PDBjnumon