PDB: 225399 resultsInfo pagesStatus searchChemie searchBIRD

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6MV4	CRYSTAL STRUCTURE OF HUMAN COAGULATION FACTOR IXa Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ... Authors: Vadivel, K, Schreuder, H.A, Liesum, A, Bajaj, S.P. Deposit date: 2018-10-24 Release date: 2019-02-20 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.37 Å) Cite: Sodium-site in serine protease domain of human coagulation factor IXa: evidence from the crystal structure and molecular dynamics simulations study. J. Thromb. Haemost., 17, 2019
8IUA	Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae in complex with isomaltose Descriptor: Candidate dextranase Glycoside hydrolase family 66, SODIUM ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose, ... Authors: Nakamura, S, Miyazaki, T. Deposit date: 2023-03-24 Release date: 2023-06-14 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria. J.Biol.Chem., 299, 2023
8IUC	Crystal structure of GH65 alpha-1,2-glucosidase from Flavobacterium johnsoniae in complex with isomaltose Descriptor: 1,2-ETHANEDIOL, Candidate alpha glycoside phosphorylase Glycoside hydrolase family 65, alpha-D-glucopyranose-(1-6)-beta-D-glucopyranose Authors: Nakamura, S, Miyazaki, T. Deposit date: 2023-03-24 Release date: 2023-06-14 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.56 Å) Cite: Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria. J.Biol.Chem., 299, 2023
8IUB	Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae in complex with isomaltotriose Descriptor: Candidate dextranase Glycoside hydrolase family 66, SODIUM ION, SULFATE ION, ... Authors: Nakamura, S, Miyazaki, T. Deposit date: 2023-03-24 Release date: 2023-06-14 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.18 Å) Cite: Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria. J.Biol.Chem., 299, 2023
7O1U	X-ray structure of furin in complex with the guanylhydrazone-based inhibitor 1 (BEV241) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ... Authors: Dahms, S.O, Brandstetter, H. Deposit date: 2021-03-30 Release date: 2021-09-01 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.7 Å) Cite: OFF-State-Specific Inhibition of the Proprotein Convertase Furin. Acs Chem.Biol., 16, 2021
7O1W	X-ray structure of furin in complex with the guanylhydrazone-based inhibitor 2 (mi307) soaked at 1 M NaCl Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ... Authors: Dahms, S.O, Brandstetter, H. Deposit date: 2021-03-30 Release date: 2021-09-01 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.8 Å) Cite: OFF-State-Specific Inhibition of the Proprotein Convertase Furin. Acs Chem.Biol., 16, 2021
6VUA	X-ray structure of human CD38 catalytic domain with 2'-Cl-araNAD+ Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1, DI(HYDROXYETHYL)ETHER, ... Authors: Dai, Z, Zhang, X.N, Nasertorabi, F, Han, G.W, Stevens, R.C, Zhang, Y. Deposit date: 2020-02-14 Release date: 2020-06-03 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Synthesis of site-specific antibody-drug conjugates by ADP-ribosyl cyclases. Sci Adv, 6, 2020
3HP6	Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatch Descriptor: 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE, 5'-D(*AP*CP*GP*CP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DDG))-3', ... Authors: Wu, E.Y, Beese, L.S. Deposit date: 2009-06-03 Release date: 2010-06-23 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.81 Å) Cite: The structure of a high fidelity DNA polymerase bound to a mismatched nucleotide reveals an "ajar" intermediate conformation in the nucleotide selection mechanism. J.Biol.Chem., 286, 2011
6VWO	Crystal structure of E. coli guanosine kinase Descriptor: ADENOSINE-5'-DIPHOSPHATE, GUANOSINE, Inosine-guanosine kinase, ... Authors: Wang, B, Grant, R.A, Laub, M.T. Deposit date: 2020-02-20 Release date: 2020-10-07 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.78 Å) Cite: ppGpp Coordinates Nucleotide and Amino-Acid Synthesis in E. coli During Starvation. Mol.Cell, 80, 2020
7O22	X-ray structure of furin in complex with the guanylhydrazone-based inhibitor 4 (mi359) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ... Authors: Dahms, S.O, Brandstetter, H. Deposit date: 2021-03-30 Release date: 2021-09-01 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.8 Å) Cite: OFF-State-Specific Inhibition of the Proprotein Convertase Furin. Acs Chem.Biol., 16, 2021
8JA7	Cryo-EM structure of Mycobacterium tuberculosis LpqY-SugABC in complex with trehalose Descriptor: Trehalose import ATP-binding protein SugC, Trehalose transport system permease protein SugA, Trehalose transport system permease protein SugB, ... Authors: Zhang, B, Liang, J, Rao, Z. Deposit date: 2023-05-05 Release date: 2023-09-27 Last modified: 2024-04-10 Method: ELECTRON MICROSCOPY (3.02 Å) Cite: Molecular recognition of trehalose and trehalose analogues by Mycobacterium tuberculosis LpqY-SugABC. Proc.Natl.Acad.Sci.USA, 120, 2023
7O1Y	X-ray structure of furin in complex with the guanylhydrazone-based inhibitor 2 (mi307) soaked at 0.25 M NaCl Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ... Authors: Dahms, S.O, Brandstetter, H. Deposit date: 2021-03-30 Release date: 2021-09-01 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.7 Å) Cite: OFF-State-Specific Inhibition of the Proprotein Convertase Furin. Acs Chem.Biol., 16, 2021
7O20	X-ray structure of furin in complex with the guanylhydrazone-based inhibitor 3 (mi300) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ... Authors: Dahms, S.O, Brandstetter, H. Deposit date: 2021-03-30 Release date: 2021-09-01 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.8 Å) Cite: OFF-State-Specific Inhibition of the Proprotein Convertase Furin. Acs Chem.Biol., 16, 2021
3HTT	The hemagglutinin structure of an avian H1N1 influenza A virus in complex with 2,3-sialyllactose Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, ... Authors: Wang, G, Li, A, Zhang, Q, Wu, C, Zhang, R, Cai, Q, Song, W, Yuen, K.-Y. Deposit date: 2009-06-12 Release date: 2009-08-11 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.95 Å) Cite: The hemagglutinin structure of an avian H1N1 influenza A virus Virology, 392, 2009
6VZK	Crystal structure of human CaMKII-alpha (CAMK2A)kinase domain Descriptor: 4'-HYDROXYCINNAMIC ACID, Calcium/calmodulin-dependent protein kinase type II subunit alpha Authors: Ozden, C, Stratton, M.M, Garman, S.C. Deposit date: 2020-02-28 Release date: 2020-04-22 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Characterization of CaMKII alpha holoenzyme stability. Protein Sci., 29, 2020
8JEA	Crystal structure of CGL1 from Crassostrea gigas, mannotriose-bound form (CGL1/Man(alpha)1-2Man(alpha)1-2Man) Descriptor: ACETIC ACID, CACODYLATE ION, MAGNESIUM ION, ... Authors: Unno, H, Hatakeyama, T. Deposit date: 2023-05-15 Release date: 2023-10-25 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (0.97 Å) Cite: Mannose oligosaccharide recognition of CGL1, a mannose-specific lectin containing DM9 motifs from Crassostrea gigas, revealed by X-ray crystallographic analysis. J.Biochem., 175, 2023
6W7Z	RNF12 RING domain in complex with Ube2d2 Descriptor: E3 ubiquitin-protein ligase RLIM, GLYCEROL, Ubiquitin-conjugating enzyme E2 D2, ... Authors: Middleton, A.J, Day, C.L. Deposit date: 2020-03-19 Release date: 2020-05-20 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.8 Å) Cite: The RING Domain of RING Finger 12 Efficiently Builds Degradative Ubiquitin Chains. J.Mol.Biol., 432, 2020
5WMQ	Crystal Structure of HLA-B8 in complex with ELR, an Influenza A virus peptide Descriptor: Beta-2-microglobulin, ELR peptide from IAV, HLA class I histocompatibility antigen, ... Authors: Gras, S, Rossjohn, J. Deposit date: 2017-07-31 Release date: 2018-06-06 Last modified: 2020-02-26 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Inability To Detect Cross-Reactive Memory T Cells Challenges the Frequency of Heterologous Immunity among Common Viruses. J. Immunol., 200, 2018
8JEB	Crystal structure of CGL1 from Crassostrea gigas, mannotetraose-bound form (CGL1/Man(alpha)1-2Man(alpha)1-2Man(alpha)1-6Man) Descriptor: ACETIC ACID, MAGNESIUM ION, Natterin-3, ... Authors: Unno, H, Hatakeyama, T. Deposit date: 2023-05-15 Release date: 2023-10-25 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Mannose oligosaccharide recognition of CGL1, a mannose-specific lectin containing DM9 motifs from Crassostrea gigas, revealed by X-ray crystallographic analysis. J.Biochem., 175, 2023
3HPI	Crystal structure of maltose-binding protein mutant with bound sucrose Descriptor: ACETATE ION, Maltose-binding periplasmic protein, ZINC ION, ... Authors: Gould, A.D, Shilton, B.H. Deposit date: 2009-06-04 Release date: 2010-02-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2 Å) Cite: Studies of the maltose transport system reveal a mechanism for coupling ATP hydrolysis to substrate translocation without direct recognition of substrate. J.Biol.Chem., 285, 2010
8JE9	Crystal structure of CGL1 from Crassostrea gigas, mannobiose-bound form (CGL1/Man(alpha)1-2Man) Descriptor: ACETIC ACID, CACODYLATE ION, Natterin-3, ... Authors: Unno, H, Hatakeyama, T. Deposit date: 2023-05-15 Release date: 2023-10-25 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1 Å) Cite: Mannose oligosaccharide recognition of CGL1, a mannose-specific lectin containing DM9 motifs from Crassostrea gigas, revealed by X-ray crystallographic analysis. J.Biochem., 175, 2023
3HTO	the hemagglutinin structure of an avian H1N1 influenza A virus Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, ... Authors: Wang, G, Li, A, Zhang, Q, Wu, C, Zhang, R, Cai, Q, Song, W, Yuen, K.-Y. Deposit date: 2009-06-12 Release date: 2009-08-11 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.95 Å) Cite: The hemagglutinin structure of an avian H1N1 influenza A virus Virology, 392, 2009
3I02	Crystal structure of S54-10 antibody in complex with antigen Kdo(2.4)Kdo(2.4)Kdo Descriptor: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-4)-3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-4)-prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulopyranosidonic acid, Immunoglobulin heavy chain, Immunoglobulin light chain Authors: Brooks, C.L, Muller-Loennies, S, Borisova, S.N, Brade, L, Kosma, P, Hirama, T, MacKenzie, C.R, Brade, H, Evans, S.V. Deposit date: 2009-06-24 Release date: 2010-01-12 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Antibodies raised against chlamydial lipopolysaccharide antigens reveal convergence in germline gene usage and differential epitope recognition Biochemistry, 49, 2010
7PN4	Evolved unspecific peroxygenase with A77L mutation in complex with naphthalene Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Aromatic peroxygenase, CHLORIDE ION, ... Authors: Fernandez-Garcia, A, Sanz-Aparicio, J. Deposit date: 2021-09-06 Release date: 2023-01-25 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Engineering a Highly Regioselective Fungal Peroxygenase for the Synthesis of Hydroxy Fatty Acids. Angew.Chem.Int.Ed.Engl., 62, 2023
7PN7	Evolved unspecific peroxygenase with A77L mutation in complex with palmitoleic acid Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Aromatic peroxygenase, CHLORIDE ION, ... Authors: Fernandez-Garcia, A, Sanz-Aparicio, J. Deposit date: 2021-09-06 Release date: 2023-01-25 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Engineering a Highly Regioselective Fungal Peroxygenase for the Synthesis of Hydroxy Fatty Acids. Angew.Chem.Int.Ed.Engl., 62, 2023

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