PDB: 161444 resultsInfo pagesStatus searchChemie searchBIRD

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1ZVY	Crystal structure of the VHH D3-L11 in complex with hen egg white lysozyme Descriptor: GLYCEROL, Immunoglobulin heavy chain antibody variable domain, Lysozyme C, ... Authors: De Genst, E, Silence, K, Decanniere, K, Conrath, K, Loris, R, Kinne, J, Muyldermans, S, Wyns, L. Deposit date: 2005-06-03 Release date: 2006-04-04 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.63 Å) Cite: Molecular basis for the preferential cleft recognition by dromedary heavy-chain antibodies. Proc.Natl.Acad.Sci.Usa, 103, 2006
7CYQ	Cryo-EM structure of an extended SARS-CoV-2 replication and transcription complex reveals an intermediate state in cap synthesis Descriptor: GUANOSINE-5'-DIPHOSPHATE, Helicase, MAGNESIUM ION, ... Authors: Yan, L, Ge, J, Zheng, L, Zhang, Y, Gao, Y, Wang, T, Wang, H, Huang, Y, Li, M, Wang, Q, Rao, Z, Lou, Z. Deposit date: 2020-09-04 Release date: 2020-12-09 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: Cryo-EM Structure of an Extended SARS-CoV-2 Replication and Transcription Complex Reveals an Intermediate State in Cap Synthesis. Cell, 184, 2021
8P0K	Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex, module 2 of capping enzyme mobile Descriptor: DNA-directed RNA polymerase 133 kDa polypeptide, DNA-directed RNA polymerase 147 kDa polypeptide, DNA-directed RNA polymerase 18 kDa subunit, ... Authors: Grimm, C, Jungwirth, S, Fischer, U. Deposit date: 2023-05-10 Release date: 2024-05-22 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target) To Be Published
8P0N	Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex shallow conformation Descriptor: DNA-directed RNA polymerase 133 kDa polypeptide, DNA-directed RNA polymerase 147 kDa polypeptide, DNA-directed RNA polymerase 18 kDa subunit, ... Authors: Grimm, C, Jungwirth, S, Fischer, U. Deposit date: 2023-05-10 Release date: 2024-05-22 Method: ELECTRON MICROSCOPY (2.58 Å) Cite: Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target) To Be Published
8P0J	Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex Descriptor: DNA-directed RNA polymerase 133 kDa polypeptide, DNA-directed RNA polymerase 147 kDa polypeptide, DNA-directed RNA polymerase 18 kDa subunit, ... Authors: Grimm, C, Jungwirth, S, Fischer, U. Deposit date: 2023-05-10 Release date: 2024-05-22 Method: ELECTRON MICROSCOPY (2.39 Å) Cite: Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target) To Be Published
4RMK	Crystal structure of the Olfactomedin domain of latrophilin 3 in P65 crystal form Descriptor: CALCIUM ION, Latrophilin-3 Authors: Ranaivoson, F.M, Liu, Q, Martini, F, Bergami, F, Von daake, S, Li, S, Demeler, B, Hendrickson, W.A, Comoletti, D. Deposit date: 2014-10-21 Release date: 2015-08-19 Last modified: 2017-11-22 Method: X-RAY DIFFRACTION (1.606 Å) Cite: Structural and Mechanistic Insights into the Latrophilin3-FLRT3 Complex that Mediates Glutamatergic Synapse Development. Structure, 23, 2015
3M26	Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Descriptor: Cytochrome c peroxidase, mitochondrial, PHOSPHATE ION, ... Authors: Meharenna, Y.T, Poulos, T.L. Deposit date: 2010-03-06 Release date: 2010-05-12 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Crystallographic and single-crystal spectral analysis of the peroxidase ferryl intermediate. Biochemistry, 49, 2010
3M2I	Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Descriptor: Cytochrome c peroxidase, mitochondrial, PHOSPHATE ION, ... Authors: Meharenna, Y.T, Poulos, T.L. Deposit date: 2010-03-07 Release date: 2010-05-12 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Crystallographic and single-crystal spectral analysis of the peroxidase ferryl intermediate. Biochemistry, 49, 2010
3M27	Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Descriptor: Cytochrome c peroxidase, mitochondrial, PHOSPHATE ION, ... Authors: Meharenna, Y.T, Poulos, T.L. Deposit date: 2010-03-06 Release date: 2010-05-12 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Crystallographic and single-crystal spectral analysis of the peroxidase ferryl intermediate. Biochemistry, 49, 2010
3M2H	Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Descriptor: Cytochrome c peroxidase, mitochondrial, PHOSPHATE ION, ... Authors: Meharenna, Y.T, Poulos, T.L. Deposit date: 2010-03-07 Release date: 2010-05-12 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Crystallographic and single-crystal spectral analysis of the peroxidase ferryl intermediate. Biochemistry, 49, 2010
6FPK	Co-translational folding intermediate dictates membrane targeting of the signal recognition particle (SRP)- receptor Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Signal recognition particle receptor FtsY Authors: Karniel, A, Mrusek, D, Steinchen, W, Dym, O, Bange, G, Bibi, E. Deposit date: 2018-02-11 Release date: 2018-05-09 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Co-translational Folding Intermediate Dictates Membrane Targeting of the Signal Recognition Particle Receptor. J. Mol. Biol., 430, 2018
8WHH	Crystal structure of Se-Met derivative CLASP2 in complex with CLIP170 Descriptor: CLIP-associating protein 2, CLIP1 protein Authors: Jin, G, Wei, Z. Deposit date: 2023-09-23 Release date: 2024-08-28 Method: X-RAY DIFFRACTION (3.801 Å) Cite: CLASP-mediated competitive binding in protein condensates directs microtubule growth. Nat Commun, 15, 2024
6FPR	Co-translational folding intermediate dictates membrane targeting of the signal recognition particle (SRP)- receptor Descriptor: Signal recognition particle receptor FtsY Authors: Karniel, A, Mrusek, D, Steinchen, W, Dym, O, Bange, G, Bibi, E. Deposit date: 2018-02-12 Release date: 2018-05-09 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Co-translational Folding Intermediate Dictates Membrane Targeting of the Signal Recognition Particle Receptor. J. Mol. Biol., 430, 2018
1LPP	ANALOGS OF REACTION INTERMEDIATES IDENTIFY A UNIQUE SUBSTRATE BINDING SITE IN CANDIDA RUGOSA LIPASE Descriptor: 1-HEXADECANOSULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Grochulski, P.G, Cygler, M.C. Deposit date: 1995-01-17 Release date: 1995-04-20 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.18 Å) Cite: Analogs of reaction intermediates identify a unique substrate binding site in Candida rugosa lipase. Biochemistry, 33, 1994
7E99	Oxy-deoxy intermediate of 400 kDa giant hemoglobin at 13% oxygen saturation Descriptor: Extracellular giant hemoglobin major globin subunit A1, Extracellular giant hemoglobin major globin subunit A2, Extracellular giant hemoglobin major globin subunit B2, ... Authors: Numoto, N, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N. Deposit date: 2021-03-03 Release date: 2021-10-06 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Coarse snapshots of oxygen-dissociation intermediates of a giant hemoglobin elucidated by determining the oxygen saturation in individual subunits in the crystalline state. Iucrj, 8, 2021
7E97	Oxy-deoxy intermediate of 400 kDa giant hemoglobin at 58% oxygen saturation Descriptor: Extracellular giant hemoglobin major globin subunit A1, Extracellular giant hemoglobin major globin subunit A2, Extracellular giant hemoglobin major globin subunit B2, ... Authors: Numoto, N, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N. Deposit date: 2021-03-03 Release date: 2021-10-06 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Coarse snapshots of oxygen-dissociation intermediates of a giant hemoglobin elucidated by determining the oxygen saturation in individual subunits in the crystalline state. Iucrj, 8, 2021
7E98	Oxy-deoxy intermediate of 400 kDa giant hemoglobin at 21% oxygen saturation Descriptor: Extracellular giant hemoglobin major globin subunit A1, Extracellular giant hemoglobin major globin subunit A2, Extracellular giant hemoglobin major globin subunit B2, ... Authors: Numoto, N, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N. Deposit date: 2021-03-03 Release date: 2021-10-06 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Coarse snapshots of oxygen-dissociation intermediates of a giant hemoglobin elucidated by determining the oxygen saturation in individual subunits in the crystalline state. Iucrj, 8, 2021
7E96	Oxy-deoxy intermediate of 400 kDa giant hemoglobin at 69% oxygen saturation Descriptor: CALCIUM ION, Extracellular giant hemoglobin major globin subunit A1, Extracellular giant hemoglobin major globin subunit A2, ... Authors: Numoto, N, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N. Deposit date: 2021-03-03 Release date: 2021-10-06 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Coarse snapshots of oxygen-dissociation intermediates of a giant hemoglobin elucidated by determining the oxygen saturation in individual subunits in the crystalline state. Iucrj, 8, 2021
3ZIF	Cryo-EM structures of two intermediates provide insight into adenovirus assembly and disassembly Descriptor: HEXON PROTEIN, PENTON PROTEIN, PIX, ... Authors: Cheng, L, Huang, X, Li, X, Xiong, W, Sun, W, Yang, C, Zhang, K, Wang, Y, Liu, H, Ji, G, Sun, F, Zheng, C, Zhu, P. Deposit date: 2013-01-09 Release date: 2014-01-22 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Cryo-Em Structures of Two Bovine Adenovirus Type 3 Intermediates Virology, 450, 2014
6CDK	Characterization of the P1+ intermediate state of nitrogenase P-cluster Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ... Authors: Keable, S.M, Zadvornyy, O.A, Rasmussen, A.J, Danyal, K, Eilers, B.J, Prussia, G.A, LeVan, A.X, Seefeldt, L.C, Peters, J.W. Deposit date: 2018-02-08 Release date: 2018-05-09 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural characterization of the P1+intermediate state of the P-cluster of nitrogenase. J. Biol. Chem., 293, 2018
1IYO	Toho-1 beta-Lactamase In Complex With Cefotaxime Descriptor: CEFOTAXIME, C3' cleaved, open, ... Authors: Shimamura, T, Ibuka, A, Fushinobu, S, Wakagi, T, Ishiguro, M, Ishii, Y, Matsuzawa, H. Deposit date: 2002-09-04 Release date: 2002-12-11 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Acyl-intermediate Structures of the Extended-spectrum Class A beta -Lactamase, Toho-1, in Complex with Cefotaxime, Cephalothin, and Benzylpenicillin. J.Biol.Chem., 277, 2002
3M2A	Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Descriptor: Cytochrome c peroxidase, mitochondrial, PHOSPHATE ION, ... Authors: Meharenna, Y.T, Poulos, T.L. Deposit date: 2010-03-06 Release date: 2010-05-12 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Crystallographic and single-crystal spectral analysis of the peroxidase ferryl intermediate. Biochemistry, 49, 2010
1IYQ	Toho-1 beta-Lactamase In Complex With Benzylpenicillin Descriptor: OPEN FORM - PENICILLIN G, SULFATE ION, Toho-1 beta-lactamase Authors: Shimamura, T, Ibuka, A, Fushinobu, S, Wakagi, T, Ishiguro, M, Ishii, Y, Matsuzawa, H. Deposit date: 2002-09-04 Release date: 2002-12-11 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Acyl-intermediate Structures of the Extended-spectrum Class A beta -Lactamase, Toho-1, in Complex with Cefotaxime, Cephalothin, and Benzylpenicillin. J.Biol.Chem., 277, 2002
6Y2X	RING-DTC domains of Deltex 2, Form 2 Descriptor: Probable E3 ubiquitin-protein ligase DTX2, ZINC ION Authors: Gabrielsen, M, Buetow, L, Huang, D.T. Deposit date: 2020-02-17 Release date: 2020-09-02 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.77 Å) Cite: DELTEX2 C-terminal domain recognizes and recruits ADP-ribosylated proteins for ubiquitination. Sci Adv, 6, 2020
6Y3J	RING-DTC domains of Deltex 2, bound to ADP-ribose Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, Probable E3 ubiquitin-protein ligase DTX2, ZINC ION Authors: Gabrielssen, M, Buetow, L, Huang, D.T. Deposit date: 2020-02-18 Release date: 2020-09-02 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.6 Å) Cite: DELTEX2 C-terminal domain recognizes and recruits ADP-ribosylated proteins for ubiquitination. Sci Adv, 6, 2020

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