PDB: 30867 件ウェブページステータス検索Chemie searchBIRD

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8B9S	NATIVE FORM, THERMOSTABLE LIPASE FROM THERMOANAEROBACTER THERMOHYDROSULFURICUS 分子名称: DECANE, GLYCEROL, PHOSPHATE ION, ... 著者 Pinotsis, N, Wilmanns, M. 登録日 2022-10-06 公開日 2023-10-18 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.42 Å) 主引用文献 Discovery of a non-canonical prototype long-chain monoacylglycerol lipase through a structure-based endogenous reaction intermediate complex. Nat Commun, 14, 2023
7R3D	CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT N151G, L259V COMPLEXED WITH FE, NADH, AND GLYCEROL (Absence of Nicotinamide ring) 分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, FE (III) ION, Lactaldehyde reductase 著者 Sridhar, S, Kiema, T.R, Wierenga, R, Widersten, M. 登録日 2022-02-07 公開日 2022-10-19 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structures of lactaldehyde reductase, FucO, link enzyme activity to hydrogen bond networks and conformational dynamics. Febs J., 290, 2023
7M03	Structure of SARS-CoV-2 3CL protease in complex with inhibitor 18c 分子名称: (1R,2S)-2-((S)-2-((((3-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid, (1S,2S)-2-((S)-2-((((3-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid, 3C-like proteinase 著者 Kashipathy, M.M, Lovell, S, Battaile, K.P, Chamandi, S.D, Rathnayake, A.D, Kim, Y, Perera, K.D, Jesri, A.R.M, Nguyen, H.N, Baird, M.A, Miller, M.J, Groutas, W.C, Chang, K.O. 登録日 2021-03-10 公開日 2021-03-24 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure-Guided Design of Potent Inhibitors of SARS-CoV-2 3CL Protease: Structural, Biochemical, and Cell-Based Studies. J.Med.Chem., 64, 2021
8B9T	Crystal structure of Scribble PDZ1 with human papillomavirus strain 16 E6 peptide 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ISOPROPYL ALCOHOL, Protein E6, ... 著者 Stewart, B.Z, Kvansakul, M. 登録日 2022-10-07 公開日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of Scribble PDZ1 with human papillomavirus strain 16 E6 peptide To Be Published
8BV9	Acylphosphatase from E. coli 分子名称: 1,2-ETHANEDIOL, Acylphosphatase, GLYCEROL, ... 著者 Gavira, J.A, Martinez-Rodriguez, S. 登録日 2023-01-18 公開日 2023-10-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 First 3-D structural evidence of a native-like intertwined dimer in the acylphosphatase family. Biochem.Biophys.Res.Commun., 682, 2023
6R35	Structure of the LecB lectin from Pseudomonas aeruginosa strain PAO1 in complex with lewis x tetrasaccharide 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Fucose-binding lectin PA-IIL, ... 著者 Lepsik, M, Sommer, R, Kuhaudomlarp, S, Lelimousin, M, Varrot, A, Titz, A, Imberty, A. 登録日 2019-03-19 公開日 2019-06-12 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Induction of rare conformation of oligosaccharide by binding to calcium-dependent bacterial lectin: X-ray crystallography and modelling study. Eur.J.Med.Chem., 177, 2019
8PWX	PfRH5 bound to monoclonal antibody R5.008 分子名称: GLYCEROL, Reticulocyte-binding protein homolog 5, scFv fragment for antibody R5.008 著者 Farrell, B, Higgins, M.K. 登録日 2023-07-21 公開日 2024-06-05 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 PfRH5 bound to monoclonal antibody R5.008 To Be Published
6DUJ	Crystal structure of A51V variant of Human Cytochrome c 分子名称: Cytochrome c, HEME C 著者 Lei, H, Bowler, B.E. 登録日 2018-06-20 公開日 2019-06-26 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.82202721 Å) 主引用文献 Naturally Occurring A51V Variant of Human CytochromecDestabilizes the Native State and Enhances Peroxidase Activity. J.Phys.Chem.B, 123, 2019
8B82	Crystal structure of Scribble PDZ1 with human papillomavirus strain 16 E6 peptide 分子名称: CHLORIDE ION, Protein E6, Protein scribble homolog 著者 Stewart, B.Z, Kvansakul, M. 登録日 2022-10-04 公開日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of Scribble PDZ1 with human papillomavirus strain 16 E6 peptide To Be Published
6GQ0	Crystal structure of GanP, a glucose-galactose binding protein from Geobacillus stearothermophilus 分子名称: Putative sugar binding protein 著者 Sherf, D, Lansky, S, Zehavi, A, Shoham, Y, Shoham, G. 登録日 2018-06-07 公開日 2019-06-19 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 The crystal structure of GanP, a glucose-galactose binding protein from Gebacillus Stearothermophilus To Be Published
6R3X	Structure of Pseudomonas aeruginosa Penicillin-Binding Protein 3 (PBP3) in complex with piperacillin 分子名称: Peptidoglycan D,D-transpeptidase FtsI, Piperacillin (Open Form) 著者 Bellini, D, Dowson, C.G. 登録日 2019-03-21 公開日 2020-02-19 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.59 Å) 主引用文献 Novel and Improved Crystal Structures of H. influenzae, E. coli and P. aeruginosa Penicillin-Binding Protein 3 (PBP3) and N. gonorrhoeae PBP2: Toward a Better Understanding of beta-Lactam Target-Mediated Resistance. J.Mol.Biol., 431, 2019
8B8O	Crystal structure of Scribble PDZ1 with human papillomavirus strain 16 E6 peptide 分子名称: 1,2-ETHANEDIOL, Protein E6, Protein scribble homolog 著者 Stewart, B.Z, Kvansakul, M. 登録日 2022-10-04 公開日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structure of Scribble PDZ1 with human papillomavirus strain 16 E6 peptide To Be Published
6GMM	Crystal structure of Helicobacter pylori adhesin LabA 分子名称: adhesin LabA 著者 Paraskevopoulou, V, Overman, R.C, Stolnik, S, Winkler, S, Gellert, P, Falcone, F.H, Schimpl, M. 登録日 2018-05-27 公開日 2019-12-18 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 Structural and binding characterization of the LacdiNAc-specific adhesin (LabA; HopD) exodomain from Helicobacter pylori Current Research in Structural Biology, 2021
6R42	Structure of R504C mutant of Pseudomonas aeruginosa Penicillin-Binding Protein 3 (PBP3) in complex with piperacillin 分子名称: Peptidoglycan D,D-transpeptidase FtsI, Piperacillin (Open Form) 著者 Bellini, D, Dowson, C.G. 登録日 2019-03-21 公開日 2020-02-19 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 Novel and Improved Crystal Structures of H. influenzae, E. coli and P. aeruginosa Penicillin-Binding Protein 3 (PBP3) and N. gonorrhoeae PBP2: Toward a Better Understanding of beta-Lactam Target-Mediated Resistance. J.Mol.Biol., 431, 2019
8BL3	De novo single-chain immunoglobulin dimer scIg12 分子名称: GLYCEROL, scIg12 著者 Nadal, M, Roel-Touris, J, Marcos, E. 登録日 2022-11-09 公開日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Single-chain dimers from de novo immunoglobulins as robust scaffolds for multiple binding loops. Nat Commun, 14, 2023
6GQD	Structure of human galactose-1-phosphate uridylyltransferase (GALT), with crystallization epitope mutations A21Y:A22T:T23P:R25L 分子名称: 1,2-ETHANEDIOL, 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE, Galactose-1-phosphate uridylyltransferase, ... 著者 Fairhead, M, Strain-Damerell, C, Kopec, J, Bezerra, G.A, Zhang, M, Burgess-Brown, N, von Delft, F, Arrowsmith, C, Edwards, A, Bountra, C, Yue, W.W, Structural Genomics Consortium (SGC) 登録日 2018-06-07 公開日 2018-07-18 実験手法 X-RAY DIFFRACTION (1.523 Å) 主引用文献 Structure of human galactose-1-phosphate uridylyltransferase (GALT), with crystallization epitope mutations A21Y:A22T:T23P:R25L To Be Published
6DJQ	Vps1 GTPase-BSE fusion complexed with GDP.AlF4- 分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, SODIUM ION, ... 著者 Varlakhanova, N.V, Brady, T.M, Tornabene, B.A, Hosford, C.J, Chappie, J.S, Ford, M.G.J. 登録日 2018-05-25 公開日 2018-08-22 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structures of the fungal dynamin-related protein Vps1 reveal a unique, open helical architecture. J. Cell Biol., 217, 2018
6R4A	Aurora-A in complex with shape-diverse fragment 55 分子名称: 2-(benzimidazol-1-yl)-~{N}-(2-phenylethyl)ethanamide, ADENOSINE-5'-DIPHOSPHATE, Aurora kinase A, ... 著者 Bayliss, R, McIntyre, P.J. 登録日 2019-03-22 公開日 2019-05-08 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.937 Å) 主引用文献 Construction of a Shape-Diverse Fragment Set: Design, Synthesis and Screen against Aurora-A Kinase. Chemistry, 25, 2019
5WRP	T-state crystal structure of pyruvate kinase from Mycobacterium tuberculosis 分子名称: PHOSPHATE ION, Pyruvate kinase 著者 Zhong, W, Cai, Q, El Sahili, A, Lescar, J, Dedon, P.C. 登録日 2016-12-02 公開日 2017-11-15 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Allosteric pyruvate kinase-based "logic gate" synergistically senses energy and sugar levels in Mycobacterium tuberculosis. Nat Commun, 8, 2017
7RML	Neisseria meningitidis Methylenetetrahydrofolate reductase in complex with FAD 分子名称: 5,10-methylenetetrahydrofolate reductase, FLAVIN-ADENINE DINUCLEOTIDE 著者 Pederick, J.L, Wegener, K.L, Salaemae, W, Bruning, J.B. 登録日 2021-07-27 公開日 2022-11-02 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Biochemical and structural characterization of meningococcal methylenetetrahydrofolate reductase. Protein Sci., 32, 2023
7LZY	Structure of SARS-CoV-2 3CL protease in complex with inhibitor 3c 分子名称: (1R,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1s,4S)-4-propylcyclohexyl)oxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid, (1S,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1s,4S)-4-propylcyclohexyl)oxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid, 3C-like proteinase 著者 Lovell, S, Kashipathy, M.M, Battaile, K.P, Chamandi, S.D, Rathnayake, A.D, Kim, Y, Perera, K.D, Jesri, A.R.M, Nguyen, H.N, Baird, M.A, Miller, M.J, Groutas, W.C, Chang, K.O. 登録日 2021-03-10 公開日 2021-03-24 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structure-Guided Design of Potent Inhibitors of SARS-CoV-2 3CL Protease: Structural, Biochemical, and Cell-Based Studies. J.Med.Chem., 64, 2021
8BJS	Apo KIF20A[55-510] crystal structure 分子名称: Kinesin-like protein KIF20A, SULFATE ION, UNK-UNK-UNK-UNK 著者 Ranaivoson, F.M, Kikuti, C, Crozet, V, Sirkia, M.E, Houdusse, A. 登録日 2022-11-06 公開日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.73 Å) 主引用文献 Nucleotide-free structures of KIF20A illuminate atypical mechanochemistry in this kinesin-6. Open Biology, 13, 2023
6ISW	Structure of human telomeric DNA with 5-selenophene-modified deoxyuridine at residue 12 分子名称: DNA (22-MER), POTASSIUM ION 著者 Saikrishnan, K, Nuthanakanti, A, Srivatsan, S.G, Ahmad, I. 登録日 2018-11-19 公開日 2019-05-15 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Probing G-quadruplex topologies and recognition concurrently in real time and 3D using a dual-app nucleoside probe. Nucleic Acids Res., 47, 2019
8BL6	De novo single-chain immunoglobulin dimer scIg12+EF3a 分子名称: GLYCEROL, TERBIUM(III) ION, dIG14-scdim-EF62 著者 Nadal, M, Roel-Touris, J, Marcos, E. 登録日 2022-11-09 公開日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Single-chain dimers from de novo immunoglobulins as robust scaffolds for multiple binding loops. Nat Commun, 14, 2023
7M01	Structure of SARS-CoV-2 3CL protease in complex with inhibitor 14c 分子名称: (1R,2S)-2-((S)-2-((((S)-1-(4,4-difluorocyclohexyl)-2-phenylethoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid, (1S,2S)-2-((S)-2-((((S)-1-(4,4-difluorocyclohexyl)-2-phenylethoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid, 3C-like proteinase 著者 Lovell, S, Kashipathy, M.M, Battaile, K.P, Chamandi, S.D, Rathnayake, A.D, Kim, Y, Perera, K.D, Jesri, A.R.M, Nguyen, H.N, Baird, M.A, Miller, M.J, Groutas, W.C, Chang, K.O. 登録日 2021-03-10 公開日 2021-03-24 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Structure-Guided Design of Potent Inhibitors of SARS-CoV-2 3CL Protease: Structural, Biochemical, and Cell-Based Studies. J.Med.Chem., 64, 2021

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