PDB: 17153 件ウェブページステータス検索Chemie searchBIRD

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8V2W	Crystal Structure of the ancestral triosephosphate isomerase reconstruction of the last opisthokont common ancestor obtained by Bayesian inference 分子名称: GLYCEROL, Triosephosphate isomerase 著者 Perez-Nino, J.A, Rodriguez-Romero, A, Guerra, Y, Fernandez-Velasco, D.A. 登録日 2023-11-24 公開日 2024-09-04 実験手法 X-RAY DIFFRACTION (1.38 Å) 主引用文献 Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase. Protein Sci., 33, 2024
8DND	Crystal structure of Bothrops pirajai Piratoxin-I (PrTX-I) and synthetic inhibitor Varespladib (LY315920) 分子名称: ({3-[amino(oxo)acetyl]-1-benzyl-2-ethyl-1H-indol-4-yl}oxy)acetic acid, Basic phospholipase A2 homolog piratoxin-1, SULFATE ION 著者 Salvador, G.H.M, Fontes, M.R.M. 登録日 2022-07-11 公開日 2023-08-02 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.018 Å) 主引用文献 Structural basis of the myotoxic inhibition of the Bothrops pirajai PrTX-I by the synthetic varespladib. Biochimie, 207, 2023
8F3A	HIV-1 gp41 coiled-coil pocket IQN17 分子名称: ACETIC ACID, CHLORIDE ION, IQN17 著者 Bruun, T.U.J, Tang, S, Fernandez, D, Kim, P.S. 登録日 2022-11-09 公開日 2023-03-08 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Structure-guided stabilization improves the ability of the HIV-1 gp41 hydrophobic pocket to elicit neutralizing antibodies. J.Biol.Chem., 299, 2023
8F3B	HIV-1 gp41 coiled-coil pocket IQN22 分子名称: IQN22 著者 Bruun, T.U.J, Tang, S, Fernandez, D, Kim, P.S. 登録日 2022-11-09 公開日 2023-03-08 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure-guided stabilization improves the ability of the HIV-1 gp41 hydrophobic pocket to elicit neutralizing antibodies. J.Biol.Chem., 299, 2023
8DZK	Dbr1 in complex with 5-mer cleavage product 分子名称: FE (II) ION, RNA (5'-R(P*(G46)P*UP*GP*UP*U)-3'), RNA lariat debranching enzyme, ... 著者 Clark, N.E, Taylor, A.B. 登録日 2022-08-08 公開日 2022-08-24 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal Structure of the RNA Lariat Debranching Enzyme Dbr1 with Hydrolyzed Phosphorothioate RNA Product. Biochemistry, 61, 2022
8VKD	Crystal structure of dehaloperoxidase A in complex with substrate 4-nitrocatechol 分子名称: 4-NITROCATECHOL, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ... 著者 Aktar, M.S, de Serrano, V.S, Ghiladi, R.A, Franzen, S. 登録日 2024-01-08 公開日 2024-07-17 最終更新日 2024-07-24 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structural Comparison of Substrate Binding Sites in Dehaloperoxidase A and B. Biochemistry, 63, 2024
6ZVF	Crystal structure of the recombinant Fab fragment derived from the hybridoma M3/38 in complex with a human Galectin-3 peptide 分子名称: Chimeric Fab M3/38 (L,H), Galectin-3 著者 Skerra, A, Eichinger, A. 登録日 2020-07-24 公開日 2021-04-14 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Effective rational humanization of a PASylated anti-galectin-3 Fab for the sensitive PET imaging of thyroid cancer in vivo. Sci Rep, 11, 2021
8VKC	Crystal structure of dehaloperoxidase A in complex with substrate 4-nitrophenol 分子名称: Dehaloperoxidase A, GLYCEROL, P-NITROPHENOL, ... 著者 Aktar, M.S, de Serrano, V.S, Ghiladi, R.A, Franzen, S. 登録日 2024-01-08 公開日 2024-07-17 最終更新日 2024-07-24 実験手法 X-RAY DIFFRACTION (2.03 Å) 主引用文献 Structural Comparison of Substrate Binding Sites in Dehaloperoxidase A and B. Biochemistry, 63, 2024
8V2X	Crystal Structure of the reconstruction of the worst case of the ancestral triosephosphate isomerase of the last opisthokont common ancestor obtained by bayesian inference 分子名称: Triosephosphate isomerase 著者 Perez-Nino, J.A, Rodriguez-Romero, A, Guerra-Borrego, Y, Fernandez-Velasco, D.A. 登録日 2023-11-24 公開日 2024-09-04 実験手法 X-RAY DIFFRACTION (1.43 Å) 主引用文献 Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase. Protein Sci., 33, 2024
7A70	HEW lysozyme in complex with Ti(OH)4 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme, ... 著者 Calderone, V, Gigli, L, Ravera, E, Luchinat, C. 登録日 2020-08-27 公開日 2021-01-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 On the Mechanism of Bioinspired Formation of Inorganic Oxides: Structural Evidence of the Electrostatic Nature of the Interaction between a Mononuclear Inorganic Precursor and Lysozyme. Biomolecules, 11, 2020
8V09	Crystal Structure of the reconstruction of the ancestral triosephosphate isomerase of the last opisthokont common ancestor obtained by bayesian inference with PGH 分子名称: ACETIC ACID, FORMIC ACID, PHOSPHOGLYCOLOHYDROXAMIC ACID, ... 著者 Perez-Nino, J.A, Rodriguez-Romero, A, Guerra-Borrego, Y, Fernandez-Velasco, D.A. 登録日 2023-11-17 公開日 2024-09-04 実験手法 X-RAY DIFFRACTION (1.61 Å) 主引用文献 Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase. Protein Sci., 33, 2024
8F5K	Azurin from Pseudomonas aeruginosa, Y72F/Y108F/F110A mutant 分子名称: Azurin, COPPER (II) ION 著者 Zeug, M, Offenbacher, A.R, Choe, J. 登録日 2022-11-14 公開日 2023-01-04 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Electrochemical and Structural Study of the Buried Tryptophan in Azurin: Effects of Hydration and Polarity on the Redox Potential of W48. J.Phys.Chem.B, 127, 2023
8F5L	Azurin from Pseudomonas aeruginosa, Y72F/Y108F/F110L mutant 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Azurin, COPPER (II) ION 著者 Zeug, M, Offenbacher, A.R, Choe, J. 登録日 2022-11-14 公開日 2023-01-04 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.15 Å) 主引用文献 Electrochemical and Structural Study of the Buried Tryptophan in Azurin: Effects of Hydration and Polarity on the Redox Potential of W48. J.Phys.Chem.B, 127, 2023
8VSK	Crystal structure of Dehaloperoxidase A in complex with substrate 2,4-dibromophenol 分子名称: 2,4-bis(bromanyl)phenol, DI(HYDROXYETHYL)ETHER, Dehaloperoxidase A, ... 著者 Aktar, M.S, de Serrano, V.S, Ghiladi, R.A, Franzen, S. 登録日 2024-01-24 公開日 2024-07-17 最終更新日 2024-07-24 実験手法 X-RAY DIFFRACTION (1.515 Å) 主引用文献 Structural Comparison of Substrate Binding Sites in Dehaloperoxidase A and B. Biochemistry, 63, 2024
8WZU	4-hydroxybutyryl-CoA Synthetase (ADP-forming) from Nitrosopumilus maritimus. 分子名称: 4-hydroxybutyrate--CoA ligase [ADP-forming], SULFATE ION 著者 Johnson, J, Demirci, H. 登録日 2023-11-02 公開日 2024-06-12 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal Structure of 4-hydroxybutyryl CoA synthetase (ADP-forming): A Key Enzyme in the Thaumarchaeal Hydroxypropionate/Hydroxybutyrate cycle. To Be Published
8EWV	DNA-encoded library (DEL)-enabled discovery of proximity inducing small molecules 分子名称: Bromodomain-containing protein 4, Elongin-B, Elongin-C, ... 著者 Schreiber, S.L, Shu, W, Ma, X, Michaud, G, Bonazzi, S, Berst, F. 登録日 2022-10-24 公開日 2023-10-04 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 DNA-encoded library-enabled discovery of proximity-inducing small molecules. Nat.Chem.Biol., 20, 2024
8ETQ	Designed pentafoil knot protein folded into a trefoil knot 分子名称: k-cTRP5 著者 Doyle, L.A, Kibler, R.D, Bradley, P, Stoddard, B.L. 登録日 2022-10-17 公開日 2023-10-25 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.42 Å) 主引用文献 De novo design of knotted tandem repeat proteins. Nat Commun, 14, 2023
8TWR	Influenza A virus (A/Aichi/2/1968(H3N2) nucleoprotein mutant - 2-7 deleted, P283S, R416A 分子名称: Nucleoprotein, SODIUM ION 著者 Yoon, J, Zhang, Y.M, Grant, R.A, Shoulders, M.D. 登録日 2023-08-21 公開日 2024-07-03 最終更新日 2024-07-10 実験手法 X-RAY DIFFRACTION (3.09 Å) 主引用文献 The immune-evasive proline-283 substitution in influenza nucleoprotein increases aggregation propensity without altering the native structure. Sci Adv, 10, 2024
8VYL	The structure of Human Hemoglobin in Complex with Nanobody BtNbE11 分子名称: ACETYL GROUP, Hemoglobin subunit alpha, Hemoglobin subunit beta, ... 著者 Grinter, R, Binks, S, Fox, D. 登録日 2024-02-08 公開日 2024-07-17 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 The structure of a haemoglobin-nanobody complex reveals human beta-subunit-specific interactions. Febs Lett., 2024
8VZR	Crystal structure of dehaloperoxidase A in complex with substrate 4-bromo-o-cresol 分子名称: 4-bromo-2-methylphenol, DI(HYDROXYETHYL)ETHER, Dehaloperoxidase A, ... 著者 Aktar, M.S, de Serrano, V.S, Ghiladi, R.A, Franzen, S. 登録日 2024-02-12 公開日 2024-07-17 最終更新日 2024-07-24 実験手法 X-RAY DIFFRACTION (1.64 Å) 主引用文献 Structural Comparison of Substrate Binding Sites in Dehaloperoxidase A and B. Biochemistry, 63, 2024
8W08	Crystal Structure of the worst case reconstruction of the ancestral triosephosphate isomerase of the last opisthokont common ancestor obtained by maximum likelihood 分子名称: FLUORIDE ION, Triosephosphate isomerase 著者 Perez-Nino, J.A, Rodriguez-Romero, A, Guerra-Borrego, Y, Fernandez-Velasco, D.A. 登録日 2024-02-13 公開日 2024-09-04 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase. Protein Sci., 33, 2024
8EK4	De novo designed ice-binding proteins from twist-constrained helices 分子名称: Ice-binding protein TIP-99a 著者 Bera, A.K, De Haas, R.J. 登録日 2022-09-19 公開日 2023-07-12 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 De novo designed ice-binding proteins from twist-constrained helices. Proc.Natl.Acad.Sci.USA, 120, 2023
8UGC	FD15: Flat repeat helix-turn-helix-turn protein 分子名称: FD15 著者 Davila-Hernandez, F, Bera, A.K, Kang, A, Baker, D. 登録日 2023-10-05 公開日 2023-12-27 実験手法 X-RAY DIFFRACTION (4 Å) 主引用文献 Directing polymorph specific calcium carbonate formation with de novo protein templates. Nat Commun, 14, 2023
8W05	Crystal Structure of the reconstruction of the ancestral triosephosphate isomerase of the last opisthokont common ancestor obtained by maximum likelihood 分子名称: Triosephosphate isomerase 著者 Perez-Nino, J.A, Rodriguez-Romero, A, Guerra-Borrego, Y, Fernandez-Velasco, D.A. 登録日 2024-02-13 公開日 2024-09-04 実験手法 X-RAY DIFFRACTION (2.16 Å) 主引用文献 Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase. Protein Sci., 33, 2024
8W06	Crystal Structure of the reconstruction of the ancestral triosephosphate isomerase of the last opisthokont common ancestor obtained by maximum likelihood with PGH 分子名称: 1,2-ETHANEDIOL, ACETATE ION, ACETIC ACID, ... 著者 Perez-Nino, J.A, Rodriguez-Romero, A, Guerra-Borrego, Y, Fernandez-Velasco, D.A. 登録日 2024-02-13 公開日 2024-09-04 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase. Protein Sci., 33, 2024

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