PDB: 7386 件ウェブページステータス検索Chemie searchBIRD

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8I9V	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2 分子名称: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... 著者 Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. 登録日 2023-02-07 公開日 2023-05-17 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
4QMF	Structure of the Krr1 and Faf1 complex from Saccharomyces cerevisiae 分子名称: KRR1 small subunit processome component, Protein FAF1 著者 Zheng, S, Ye, K. 登録日 2014-06-16 公開日 2014-07-09 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.804 Å) 主引用文献 Interaction between ribosome assembly factors Krr1 and Faf1 is essential for formation of small ribosomal subunit in yeast J.Biol.Chem., 289, 2014
8I9Z	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4 分子名称: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... 著者 Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. 登録日 2023-02-07 公開日 2023-05-17 最終更新日 2023-07-19 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8I9X	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1 分子名称: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... 著者 Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. 登録日 2023-02-07 公開日 2023-05-17 最終更新日 2023-07-19 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8IA0	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6 分子名称: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... 著者 Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. 登録日 2023-02-07 公開日 2023-05-17 最終更新日 2023-07-19 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8I9Y	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2 分子名称: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... 著者 Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. 登録日 2023-02-07 公開日 2023-05-17 最終更新日 2023-07-19 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
5MDV	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 James, N.R, Brown, A, Gordiyenko, Y, Ramakrishnan, V. 登録日 2016-11-13 公開日 2016-12-14 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.97 Å) 主引用文献 Translational termination without a stop codon. Science, 354, 2016
5MDW	Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 James, N.R, Brown, A, Gordiyenko, Y, Ramakrishnan, V. 登録日 2016-11-13 公開日 2016-12-14 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.06 Å) 主引用文献 Translational termination without a stop codon. Science, 354, 2016
7RQA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution 分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, ... 著者 Syroegin, E.A, Flemmich, L, Klepacki, D, Vazquez-Laslop, N, Micura, R, Polikanov, Y.S. 登録日 2021-08-06 公開日 2022-01-26 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural basis for the context-specific action of the classic peptidyl transferase inhibitor chloramphenicol. Nat.Struct.Mol.Biol., 29, 2022
7RQC	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ... 著者 Syroegin, E.A, Flemmich, L, Klepacki, D, Vazquez-Laslop, N, Micura, R, Polikanov, Y.S. 登録日 2021-08-06 公開日 2022-01-26 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural basis for the context-specific action of the classic peptidyl transferase inhibitor chloramphenicol. Nat.Struct.Mol.Biol., 29, 2022
7RQD	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ... 著者 Syroegin, E.A, Flemmich, L, Klepacki, D, Vazquez-Laslop, N, Micura, R, Polikanov, Y.S. 登録日 2021-08-06 公開日 2022-01-26 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural basis for the context-specific action of the classic peptidyl transferase inhibitor chloramphenicol. Nat.Struct.Mol.Biol., 29, 2022
7RQB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ... 著者 Syroegin, E.A, Flemmich, L, Klepacki, D, Vazquez-Laslop, N, Micura, R, Polikanov, Y.S. 登録日 2021-08-06 公開日 2022-01-26 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Structural basis for the context-specific action of the classic peptidyl transferase inhibitor chloramphenicol. Nat.Struct.Mol.Biol., 29, 2022
7RQE	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ... 著者 Syroegin, E.A, Flemmich, L, Klepacki, D, Vazquez-Laslop, N, Micura, R, Polikanov, Y.S. 登録日 2021-08-06 公開日 2022-01-26 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural basis for the context-specific action of the classic peptidyl transferase inhibitor chloramphenicol. Nat.Struct.Mol.Biol., 29, 2022
6R84	Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1) 分子名称: 25S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Su, T, Izawa, T, Cheng, J, Yamashita, Y, Berninghausen, O, Inada, T, Neupert, W, Beckmann, R. 登録日 2019-03-31 公開日 2019-06-26 最終更新日 2019-07-10 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structure and function of Vms1 and Arb1 in RQC and mitochondrial proteome homeostasis. Nature, 570, 2019
5MDY	Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 James, N.R, Brown, A, Gordiyenko, Y, Ramakrishnan, V. 登録日 2016-11-13 公開日 2016-12-21 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.35 Å) 主引用文献 Translational termination without a stop codon. Science, 354, 2016
8I9W	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3 分子名称: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... 著者 Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. 登録日 2023-02-07 公開日 2023-05-17 最終更新日 2023-07-19 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
6R86	Yeast Vms1-60S ribosomal subunit complex (post-state) 分子名称: 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Su, T, Izawa, T, Cheng, J, Yamashita, Y, Berninghausen, O, Inada, T, Neupert, W, Beckmann, R. 登録日 2019-03-31 公開日 2019-07-31 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure and function of Vms1 and Arb1 in RQC and mitochondrial proteome homeostasis. Nature, 570, 2019
6R87	Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1) 分子名称: 25S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Su, T, Izawa, T, Cheng, J, Yamashita, Y, Berninghausen, O, Inada, T, Neupert, W, Beckmann, R. 登録日 2019-03-31 公開日 2019-06-26 最終更新日 2019-07-10 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure and function of Vms1 and Arb1 in RQC and mitochondrial proteome homeostasis. Nature, 570, 2019
4GNI	Structure of the Ssz1 ATPase bound to ATP and Magnesium 分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Putative heat shock protein 著者 Bange, G, Sinning, I. 登録日 2012-08-17 公開日 2012-12-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.796 Å) 主引用文献 Structural characterization of a eukaryotic chaperone-the ribosome-associated complex. Nat.Struct.Mol.Biol., 20, 2013
8I9P	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16 分子名称: 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, 60S ribosomal protein L16-like protein, ... 著者 Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. 登録日 2023-02-07 公開日 2023-05-17 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
7U2J	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Syroegin, E.A, Aleksandrova, E.V, Polikanov, Y.S. 登録日 2022-02-24 公開日 2022-07-13 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Structural basis for the inability of chloramphenicol to inhibit peptide bond formation in the presence of A-site glycine. Nucleic Acids Res., 50, 2022
7U2I	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Syroegin, E.A, Aleksandrova, E.V, Polikanov, Y.S. 登録日 2022-02-24 公開日 2022-07-13 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Structural basis for the inability of chloramphenicol to inhibit peptide bond formation in the presence of A-site glycine. Nucleic Acids Res., 50, 2022
7U2H	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, and deacylated E-site tRNAgly at 2.55A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Syroegin, E.A, Aleksandrova, E.V, Polikanov, Y.S. 登録日 2022-02-24 公開日 2022-07-13 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Structural basis for the inability of chloramphenicol to inhibit peptide bond formation in the presence of A-site glycine. Nucleic Acids Res., 50, 2022
4FBA	Structure of mutant RIP from barley seeds in complex with adenine 分子名称: ADENINE, Protein synthesis inhibitor I 著者 Lee, B.-G, Kim, M.K, Suh, S.W, Song, H.K. 登録日 2012-05-22 公開日 2012-10-31 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structures of the ribosome-inactivating protein from barley seeds reveal a unique activation mechanism. Acta Crystallogr.,Sect.D, 68, 2012
4FBB	Structure of mutant RIP from barley seeds in complex with adenine (AMP-incubated) 分子名称: ADENINE, Protein synthesis inhibitor I 著者 Lee, B.-G, Kim, M.K, Suh, S.W, Song, H.K. 登録日 2012-05-22 公開日 2012-10-31 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structures of the ribosome-inactivating protein from barley seeds reveal a unique activation mechanism. Acta Crystallogr.,Sect.D, 68, 2012

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