PDB: 7386 件ウェブページステータス検索Chemie searchBIRD

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2MMP	Solution structure of a ribosomal protein 分子名称: Uncharacterized protein 著者 Feng, Y. 登録日 2014-03-17 公開日 2014-06-11 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structure determination of archaea-specific ribosomal protein L46a reveals a novel protein fold. Biochem.Biophys.Res.Commun., 450, 2014
1I3Y	SOLUTION STRUCTURE OF THE A LOOP OF 23S RIBOSOMAL RNA. 分子名称: 5'-R(*GP*GP*CP*UP*GP*GP*CP*(OMU)P*GP*UP*UP*CP*GP*CP*CP*AP*GP*CP*C)-3' 著者 Puglisi, J.D, Blanchard, S.C. 登録日 2001-02-17 公開日 2001-04-04 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of the A loop of 23S ribosomal RNA. Proc.Natl.Acad.Sci.USA, 98, 2001
2MER	Structure of helix 69 from escherichia coli 23s ribosomal rna 分子名称: RNA_(5'-R(P*GP*GP*CP*CP*GP*(PSU)P*AP*AP*CP*(PSU)P*AP*(PSU)P*AP*AP*CP*GP*GP*UP*C)-3') 著者 Jiang, J, Aduri, R, Chow, C.S, Santalucia, J. 登録日 2013-09-26 公開日 2014-01-01 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structure modulation of helix 69 from Escherichia coli 23S ribosomal RNA by pseudouridylations. Nucleic Acids Res., 42, 2014
2MEQ	Structure of Helix 69 from Escherichia coli 23S Ribosomal RNA 分子名称: RNA_(5'-R(P*GP*GP*CP*CP*GP*UP*AP*AP*CP*UP*AP*UP*AP*AP*CP*GP*GP*UP*C)-3') 著者 Jiang, J, Aduri, R, Chow, C.S, Santalucia, J. 登録日 2013-09-26 公開日 2014-01-01 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structure modulation of helix 69 from Escherichia coli 23S ribosomal RNA by pseudouridylations. Nucleic Acids Res., 42, 2014
3UZU	The structure of the Ribosomal RNA small subunit methyltransferase A from Burkholderia pseudomallei 分子名称: 1,2-ETHANEDIOL, Ribosomal RNA small subunit methyltransferase A 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2011-12-07 公開日 2011-12-14 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 The structure of the Ribosomal RNA small subunit methyltransferase A from Burkholderia pseudomallei TO BE PUBLISHED
4P20	Crystal structures of the bacterial ribosomal decoding site complexed with amikacin 分子名称: (2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6-(aminomethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5-azanyl-2-[(2S,3R,4S,5S ,6R)-4-azanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxidanyl-butanamide, 5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' 著者 Kondo, J, Francois, B, Russell, R.J.M, Murray, J.B, Westhof, E. 登録日 2014-02-28 公開日 2014-05-07 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure of the bacterial ribosomal decoding site complexed with amikacin containing the gamma-amino-alpha-hydroxybutyryl (haba) group. Biochimie, 88, 2006
8YEQ	Crystal structure of L7/L12 Ribosomal Protein from Mycobacterium tuberculosis 分子名称: 1,2-ETHANEDIOL, Large ribosomal subunit protein bL12 著者 Panicker, L, Tripathi, P. 登録日 2024-02-23 公開日 2024-09-04 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Crystal Structure of L7 Ribosomal Protein from Mycobacterium tuberculosis To Be Published
2H49	The NMR Structure of an Internal Loop from 23S Ribosomal RNA of Deinococcus radiodurans Differs from the Structure in the Crystal of the Ribosomal Subunit 分子名称: 5'-R(*GP*GP*CP*UP*AP*AP*GP*AP*C)-3', 5'-R(*GP*UP*CP*GP*AP*AP*GP*CP*C)-3' 著者 Shankar, N. 登録日 2006-05-23 公開日 2006-11-21 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 The NMR structure of an internal loop from 23S ribosomal RNA differs from its structure in crystals of 50s ribosomal subunits. Biochemistry, 45, 2006
3UBD	Structure of N-terminal domain of RSK2 kinase in complex with flavonoid glycoside SL0101 分子名称: 5,7-dihydroxy-2-(4-hydroxyphenyl)-4-oxo-4H-chromen-3-yl 3,4-di-O-acetyl-6-deoxy-alpha-L-mannopyranoside, Ribosomal protein S6 kinase alpha-3 著者 Utepbergenov, D, Derewenda, U, Derewenda, Z.S. 登録日 2011-10-24 公開日 2012-09-05 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 Insights into the Inhibition of the p90 Ribosomal S6 Kinase (RSK) by the Flavonol Glycoside SL0101 from the 1.5 A Crystal Structure of the N-Terminal Domain of RSK2 with Bound Inhibitor. Biochemistry, 51, 2012
3E7W	Crystal structure of DLTA: Implications for the reaction mechanism of non-ribosomal peptide synthetase (NRPS) adenylation domains 分子名称: ADENOSINE MONOPHOSPHATE, D-alanine--poly(phosphoribitol) ligase subunit 1, PHOSPHATE ION 著者 Yonus, H, Neumann, P, Zimmermann, S, May, J.J, Marahiel, M.A, Stubbs, M.T. 登録日 2008-08-19 公開日 2008-09-09 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 Crystal structure of DltA. Implications for the reaction mechanism of non-ribosomal peptide synthetase adenylation domains J.Biol.Chem., 283, 2008
3E7X	Crystal structure of DLTA: implications for the reaction mechanism of non-ribosomal peptide synthetase (NRPS) adenylation domains 分子名称: ADENOSINE MONOPHOSPHATE, D-alanine--poly(phosphoribitol) ligase subunit 1 著者 Yonus, H, Neumann, P, Zimmermann, S, May, J.J, Marahiel, M.A, Stubbs, M.T. 登録日 2008-08-19 公開日 2008-09-09 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structure of DltA. Implications for the reaction mechanism of non-ribosomal peptide synthetase adenylation domains J.Biol.Chem., 283, 2008
3GRZ	CRYSTAL STRUCTURE OF ribosomal protein L11 methylase FROM Lactobacillus delbrueckii subsp. bulgaricus 分子名称: GLYCEROL, Ribosomal protein L11 methyltransferase 著者 Patskovsky, Y, Ramagopal, U.A, Toro, R, Morano, C, Freeman, J, Chang, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) 登録日 2009-03-26 公開日 2009-04-07 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN 11 METHYLASE FROM Lactobacillus delbrueckii subsp. bulgaricus To be Published
2FQN	Crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site 分子名称: 5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3', COBALT HEXAMMINE(III), MAGNESIUM ION 著者 Kondo, J, Urzhumtsev, A, Westhof, E. 登録日 2006-01-18 公開日 2006-02-14 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Two conformational states in the crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site. Nucleic Acids Res., 34, 2006
5XQ5	NMR structure of the domain 5 of the E. coli ribosomal protein S1 分子名称: 30S ribosomal protein S1 著者 Lu, Y, Lim, L.Z, Song, J. 登録日 2017-06-06 公開日 2018-06-06 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 NMR structure of the domain 5 of the E. coli ribosomal protein S1 To Be Published
2WNT	Crystal Structure of the Human Ribosomal protein S6 kinase 分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, RIBOSOMAL PROTEIN S6 KINASE, ... 著者 Muniz, J.R.C, Elkins, J.M, Wang, J, Ugochukwu, E, Salah, E, King, O, Picaud, S, von Delft, F, Bountra, C, Arrowsmith, C.H, Weigelt, J, Edwards, A, Knapp, S. 登録日 2009-07-20 公開日 2009-08-25 最終更新日 2018-01-24 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal Structure of the Human Ribosomal Protein S6 Kinase To be Published
5YH1	Member of s1p family of ribosomal proteins PF0399 DHH domain 分子名称: GLYCEROL, MANGANESE (II) ION, Member of s1p family of ribosomal proteins 著者 Song, Y, Liu, X.P. 登録日 2017-09-27 公開日 2018-08-01 実験手法 X-RAY DIFFRACTION (2.18 Å) 主引用文献 Member of s1p family of ribosomal proteins PF0399 DHH domain To Be Published
1UWV	Crystal Structure of RumA, the iron-sulfur cluster containing E. coli 23S Ribosomal RNA 5-Methyluridine Methyltransferase 分子名称: 23S RRNA (URACIL-5-)-METHYLTRANSFERASE RUMA, CHLORIDE ION, IRON/SULFUR CLUSTER, ... 著者 Lee, T.T, Agarwalla, S, Stroud, R.M. 登録日 2004-02-11 公開日 2004-03-18 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Crystal Structure of Ruma, an Iron-Sulfur Cluster Containing E. Coli Ribosomal RNA 5-Methyluridine Methyltransferase. Structure, 12, 2004
3A62	Crystal structure of phosphorylated p70S6K1 分子名称: MANGANESE (II) ION, Ribosomal protein S6 kinase beta-1, STAUROSPORINE 著者 Sunami, T, Byrne, N, Diehl, R.E, Funabashi, K, Hall, D.L, Ikuta, M, Patel, S.B, Shipman, J.M, Smith, R.F, Takahashi, I, Zugay-Murphy, J, Iwasawa, Y, Lumb, K.J, Munshi, S.K, Sharma, S. 登録日 2009-08-18 公開日 2009-10-27 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structural basis of human p70 ribosomal S6 kinase-1 regulation by activation loop phosphorylation. J.Biol.Chem., 285, 2010
2OE8	1.8 A X-ray crystal structure of Apramycin complex with RNA fragment GGGCGUCGCUAGUACC/CGGUACUAAAAGUCGCC containing the human ribosomal decoding A site: RNA construct with 5'-overhang 分子名称: APRAMYCIN, RNA (5'-R(*CP*GP*GP*UP*AP*CP*UP*AP*AP*AP*AP*GP*UP*CP*GP*CP*C)-3'), RNA (5'-R(*GP*GP*GP*CP*GP*UP*CP*GP*CP*UP*AP*GP*UP*AP*CP*C)-3') 著者 Hermann, T, Tereshko, V, Skripkin, E, Patel, D.J. 登録日 2006-12-28 公開日 2007-02-13 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Apramycin recognition by the human ribosomal decoding site. Blood Cells Mol.Dis., 38, 2007
2OE5	1.5 A X-ray crystal structure of Apramycin complex with RNA fragment GGCGUCGCUAGUACCG/GGUACUAAAAGUCGCCC containing the human ribosomal decoding A site: RNA construct with 3'-overhang 分子名称: APRAMYCIN, MAGNESIUM ION, RNA (5'-R(*GP*GP*CP*GP*UP*CP*GP*CP*UP*AP*GP*UP*AP*CP*CP*G)-3'), ... 著者 Hermann, T, Tereshko, V, Skripkin, E, Patel, D.J. 登録日 2006-12-28 公開日 2007-02-13 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 Apramycin recognition by the human ribosomal decoding site. Blood Cells Mol.Dis., 38, 2007
4NUS	Rsk2 N-terminal kinase in complex with LJH685 分子名称: 2,6-difluoro-4-{4-[4-(4-methylpiperazin-1-yl)phenyl]pyridin-3-yl}phenol, Ribosomal protein S6 kinase alpha-3 著者 Appleton, B.A. 登録日 2013-12-04 公開日 2014-03-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.39 Å) 主引用文献 Novel potent and selective inhibitors of p90 ribosomal S6 kinase reveal the heterogeneity of RSK function in MAPK-driven cancers. Mol Cancer Res, 12, 2014
2OE6	2.4A X-ray crystal structure of unliganded RNA fragment GGGCGUCGCUAGUACC/CGGUACUAAAAGUCGCC containing the human ribosomal decoding A site: RNA construct with 5'-overhang 分子名称: RNA (5'-R(*CP*GP*GP*UP*AP*CP*UP*AP*AP*AP*AP*GP*UP*CP*GP*CP*C)-3'), RNA (5'-R(*GP*GP*GP*CP*GP*UP*CP*GP*CP*UP*AP*GP*UP*AP*CP*C)-3') 著者 Hermann, T, Tereshko, V, Skripkin, E, Patel, D.J. 登録日 2006-12-28 公開日 2007-02-13 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Apramycin recognition by the human ribosomal decoding site. Blood Cells Mol.Dis., 38, 2007
8EQ5	Crystal structure of the N-terminal kinase domain of RSK2 in complex with SPRED2 (131-160) 分子名称: 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4-oxo-4H-chromen-3-yl 6-deoxy-alpha-L-mannopyranoside, Ribosomal protein S6 kinase alpha-3, Sprouty-related, ... 著者 Bonsor, D.A, Lopez, J, McCormick, F, Simanshu, D.K. 登録日 2022-10-07 公開日 2023-04-26 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The ribosomal S6 kinase 2 (RSK2)-SPRED2 complex regulates the phosphorylation of RSK substrates and MAPK signaling. J.Biol.Chem., 299, 2023
4EL9	Structure of N-terminal kinase domain of RSK2 with afzelin 分子名称: 5,7-dihydroxy-2-(4-hydroxyphenyl)-4-oxo-4H-chromen-3-yl 6-deoxy-alpha-L-mannopyranoside, Ribosomal protein S6 kinase alpha-3 著者 Utepbergenov, D, Derewenda, U, Derewenda, Z.S. 登録日 2012-04-10 公開日 2012-09-05 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Insights into the Inhibition of the p90 Ribosomal S6 Kinase (RSK) by the Flavonol Glycoside SL0101 from the 1.5 A Crystal Structure of the N-Terminal Domain of RSK2 with Bound Inhibitor. Biochemistry, 51, 2012
2BH2	Crystal Structure of E. coli 5-methyluridine methyltransferase RumA in complex with ribosomal RNA substrate and S-adenosylhomocysteine. 分子名称: 23S RIBOSOMAL RNA 1932-1968, 23S RRNA (URACIL-5-)-METHYLTRANSFERASE RUMA, IRON/SULFUR CLUSTER, ... 著者 Lee, T.T, Agarwalla, S, Stroud, R.M. 登録日 2005-01-06 公開日 2005-03-30 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 A Unique RNA Fold in the Ruma-RNA-Cofactor Ternary Complex Contributes to Substrate Selectivity and Enzymatic Function Cell(Cambridge,Mass.), 120, 2005

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