PDB: 7386 件ウェブページステータス検索Chemie searchBIRD

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3DG0	Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of EF-G-bound translocation complex 分子名称: 16S Ribosomal RNA from E. coli, 23S Ribosomal RNA from E. coli 著者 Gao, H, LeBarron, J, Frank, J. 登録日 2008-06-12 公開日 2009-02-03 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (10.8 Å) 主引用文献 Ribosomal Dynamics: Intrinsic Instability of a Moleculaar Machine To be published
3QOY	Crystal structure of ribosomal protein L1 from Aquifex aeolicus 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 50S ribosomal protein L1, ACETIC ACID, ... 著者 Gabdulkhakov, A.G, Tishchenko, S.V, Nikonova, E.U, Shkliaeva, A.A, Garber, M.B, Nikonov, S.V, Nevskaya, N.A. 登録日 2011-02-11 公開日 2011-12-28 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal Structure of Ribosomal Protein L1 from the Bacterium Aquifex Aeolicus Crystallography Reports, 56, 2011
6IZ7	E. coli methionine aminopeptidase crystal structure fitted into the cryo-EM density map of E. coli 70S ribosome in complex with methionine aminopeptidase 分子名称: Methionine aminopeptidase 著者 Sengupta, J, Bhakta, S, Akbar, S. 登録日 2018-12-18 公開日 2019-04-17 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (11.8 Å) 主引用文献 Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit. J. Mol. Biol., 431, 2019
8AUV	Cryo-EM structure of the plant 40S subunit 分子名称: 18S rRNA, MAGNESIUM ION, POTASSIUM ION, ... 著者 Smirnova, J, Loerke, J, Kleinau, G, Schmidt, A, Buerger, J, Meyer, E.H, Mielke, T, Scheerer, P, Bock, R, Spahn, C.M.T, Zoschke, R. 登録日 2022-08-25 公開日 2023-06-07 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.38 Å) 主引用文献 Structure of the actively translating plant 80S ribosome at 2.2 angstrom resolution. Nat.Plants, 9, 2023
7QH7	Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4 分子名称: 16S ribosomal RNA, 39S ribosomal protein L10, mitochondrial, ... 著者 Rebelo-Guiomar, P, Pellegrino, S, Dent, K.C, Warren, A.J, Minczuk, M. 登録日 2021-12-10 公開日 2022-05-18 実験手法 ELECTRON MICROSCOPY (2.89 Å) 主引用文献 A late-stage assembly checkpoint of the human mitochondrial ribosome large subunit. Nat Commun, 13, 2022
6ND4	Conformational switches control early maturation of the eukaryotic small ribosomal subunit 分子名称: 18S rRNA 5' domain start, 5'ETS rRNA, Bud21, ... 著者 Hunziker, M, Barandun, J, Klinge, S. 登録日 2018-12-13 公開日 2019-06-19 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Conformational switches control early maturation of the eukaryotic small ribosomal subunit. Elife, 8, 2019
6QTA	Crystal structure of Rea1-MIDAS/Rsa4-UBL complex from Chaetomium thermophilum 分子名称: GLYCEROL, MAGNESIUM ION, Midasin,Midasin, ... 著者 Ahmed, Y.L, Thoms, M, Hurt, E, Sinning, I. 登録日 2019-02-22 公開日 2019-08-07 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.89 Å) 主引用文献 Crystal structures of Rea1-MIDAS bound to its ribosome assembly factor ligands resembling integrin-ligand-type complexes. Nat Commun, 10, 2019
8AZW	Cryo-EM structure of the plant 60S subunit 分子名称: 25S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Smirnova, J, Loerke, J, Kleinau, G, Schmidt, A, Buerger, J, Meyer, E.H, Mielke, T, Scheerer, P, Bock, R, Spahn, C.M.T, Zoschke, R. 登録日 2022-09-06 公開日 2023-06-07 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.14 Å) 主引用文献 Structure of the actively translating plant 80S ribosome at 2.2 angstrom resolution. Nat.Plants, 9, 2023
7OPE	RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement) 分子名称: 23S rRNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ... 著者 Crowe-McAuliffe, C, Wilson, D.N. 登録日 2021-05-31 公開日 2021-07-21 最終更新日 2021-09-22 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 RqcH and RqcP catalyze processive poly-alanine synthesis in a reconstituted ribosome-associated quality control system. Nucleic Acids Res., 49, 2021
8C83	Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex 分子名称: 18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S11-A, ... 著者 Ikeuchi, K, Buschauer, R, Cheng, J, Berninghausen, O, Becker, T, Beckmann, R. 登録日 2023-01-18 公開日 2023-05-24 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Molecular basis for recognition and deubiquitination of 40S ribosomes by Otu2. Nat Commun, 14, 2023
8CF8	Eravacycline bound to the 30S head 分子名称: 16S rRNA, 30S ribosomal protein S2, 30S ribosomal protein S7, ... 著者 Paternoga, H, Koller, T.O, Beckert, B, Wilson, D.N. 登録日 2023-02-03 公開日 2023-08-02 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.2 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
1XNQ	Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center 分子名称: 16S ribosomal RNA, Anticodon tRNA, MAGNESIUM ION, ... 著者 Murphy, F.V, Ramakrishnan, V. 登録日 2004-10-05 公開日 2004-12-14 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Structure of a purine-purine wobble base pair in the decoding center of the ribosome. Nat.Struct.Mol.Biol., 11, 2004
8CEP	Kasugamycin bound to the 30S body 分子名称: (1S,2R,3S,4R,5S,6S)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL 2-AMINO-4-{[CARBOXY(IMINO)METHYL]AMINO}-2,3,4,6-TETRADEOXY-ALPHA-D-ARABINO-HEXOPYRANOSIDE, 16S rRNA, 23S rRNA, ... 著者 Paternoga, H, Beckert, B, Wilson, D.N. 登録日 2023-02-02 公開日 2023-07-19 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.04 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8CAI	Streptomycin and Hygromycin B bound to the 30S body 分子名称: 16S rRNA, 30S ribosomal protein S16, 30S ribosomal protein S2, ... 著者 Paternoga, H, Crowe-McAuliffe, C, Novacek, J, Wilson, D.N. 登録日 2023-01-24 公開日 2023-07-26 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.08 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8CAZ	empty 30S head 分子名称: 16S rRNA, 30S ribosomal protein S2, 30S ribosomal protein S7, ... 著者 Paternoga, H, Beckert, B, Wilson, D.N. 登録日 2023-01-24 公開日 2023-07-26 最終更新日 2023-09-20 実験手法 ELECTRON MICROSCOPY (2.11 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8CF1	Tetracycline bound to the 30S head 分子名称: 16S rRNA, 30S ribosomal protein S2, 30S ribosomal protein S7, ... 著者 Paternoga, H, Crowe-McAuliffe, C, Beckert, B, Wilson, D.N. 登録日 2023-02-02 公開日 2023-07-26 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (1.82 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8CGJ	Streptomycin bound to the 30S body 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S16, ... 著者 Paternoga, H, Crowe-McAuliffe, C, Beckert, B, Wilson, D.N. 登録日 2023-02-05 公開日 2023-07-26 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (1.79 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8CGU	Gentamicin bound to the 30S body 分子名称: (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL, 16S rRNA, 23S rRNA, ... 著者 Paternoga, H, Crowe-McAuliffe, C, Novacek, J, Wilson, D.N. 登録日 2023-02-06 公開日 2023-07-26 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (1.89 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8CGR	Apramycin bound to the 30S body 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S16, ... 著者 Paternoga, H, Koller, T.O, Beckert, B, Wilson, D.N. 登録日 2023-02-06 公開日 2023-07-26 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.12 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
1XNR	Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center 分子名称: 16S Ribosomal RNA, 16S Ribosomal protein S10, 16S Ribosomal protein S11, ... 著者 Murphy, F.V, Ramakrishnan, V. 登録日 2004-10-05 公開日 2004-12-14 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structure of a purine-purine wobble base pair in the decoding center of the ribosome. Nat.Struct.Mol.Biol., 11, 2004
1RQU	NMR structure of L7 dimer from E.coli 分子名称: 50S ribosomal protein L7/L12 著者 Bocharov, E.V, Sobol, A.G, Pavlov, K.V, Korzhnev, D.M, Jaravine, V.A, Gudkov, A.T, Arseniev, A.S. 登録日 2003-12-07 公開日 2004-03-02 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 From structure and dynamics of protein L7/L12 to molecular switching in ribosome. J.Biol.Chem., 279, 2004
3UMY	Crystal structure of mutant ribosomal protein T217A TthL1 in complex with 80nt 23S RNA from Thermus thermophilus 分子名称: 50S ribosomal protein L1, CHLORIDE ION, MAGNESIUM ION, ... 著者 Gabdulkhakov, A.G, Nevskaya, N.A, Nikonov, S.V. 登録日 2011-11-15 公開日 2012-10-31 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of mutant ribosomal protein T217A TthL1 in complex with 80nt 23S RNA from Thermus thermophilus To be Published
6QTB	Crystal structure of Rea1-MIDAS/Ytm1-UBL complex from Chaetomium thermophilum 分子名称: GLYCEROL, MAGNESIUM ION, Midasin,Midasin, ... 著者 Ahmed, Y.L, Thoms, M, Hurt, E, Sinning, I. 登録日 2019-02-22 公開日 2019-08-07 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.89 Å) 主引用文献 Crystal structures of Rea1-MIDAS bound to its ribosome assembly factor ligands resembling integrin-ligand-type complexes. Nat Commun, 10, 2019
8CGI	Pentacycline TP038 bound to the 30S head 分子名称: 16S rRNA, 30S ribosomal protein S7, Large ribosomal subunit protein bL31A, ... 著者 Paternoga, H, Crowe-McAuliffe, C, Novacek, J, Wilson, D.N. 登録日 2023-02-04 公開日 2023-07-26 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (1.89 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
2AKI	Normal mode-based flexible fitted coordinates of a translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli 分子名称: Preprotein translocase secE subunit, Preprotein translocase secY subunit, Protein-export membrane protein secG 著者 Mitra, K, Schaffitzel, C, Shaikh, T, Tama, F, Jenni, S, Brooks III, C.L, Ban, N, Frank, J. 登録日 2005-08-03 公開日 2005-11-15 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (14.9 Å) 主引用文献 Structure of the E. coli protein-conducting channel bound to a translating ribosome. Nature, 438, 2005

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