PDB: 7386 件ウェブページステータス検索Chemie searchBIRD

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7K51	Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Demo, G, Loveland, A.B, Svidritskiy, E, Gamper, H.B, Hou, Y.M, Korostelev, A.A. 登録日 2020-09-16 公開日 2021-07-28 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nat Commun, 12, 2021
7K50	Pre-translocation non-frameshifting(CCA-A) complex (Structure I) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Demo, G, Loveland, A.B, Svidritskiy, E, Gamper, H.B, Hou, Y.M, Korostelev, A.A. 登録日 2020-09-16 公開日 2021-07-28 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nat Commun, 12, 2021
7K54	Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Demo, G, Loveland, A.B, Svidritskiy, E, Gamper, H.B, Hou, Y.M, Korostelev, A.A. 登録日 2020-09-16 公開日 2021-07-28 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nat Commun, 12, 2021
7K52	Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Demo, G, Loveland, A.B, Svidritskiy, E, Gamper, H.B, Hou, Y.M, Korostelev, A.A. 登録日 2020-09-16 公開日 2021-07-28 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nat Commun, 12, 2021
7K55	Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Demo, G, Loveland, A.B, Svidritskiy, E, Gamper, H.B, Hou, Y.M, Korostelev, A.A. 登録日 2020-09-16 公開日 2021-07-28 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nat Commun, 12, 2021
3EIP	CRYSTAL STRUCTURE OF COLICIN E3 IMMUNITY PROTEIN: AN INHIBITOR TO A RIBOSOME-INACTIVATING RNASE 分子名称: PROTEIN (COLICIN E3 IMMUNITY PROTEIN), ZINC ION 著者 Li, C, Zhao, D, Djebli, A, Shoham, M. 登録日 1999-03-29 公開日 1999-11-10 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structure of colicin E3 immunity protein: an inhibitor of a ribosome-inactivating RNase. Structure Fold.Des., 7, 1999
3V14	Crystal structure of the complex of type I Ribosome inactivating protein complexed with Trehalose at 1.70 A resolution 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Ribosome inactivating protein, ... 著者 Yamini, S, Pandey, S, Kushwaha, G.S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P. 登録日 2011-12-09 公開日 2012-01-04 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal structure of the complex of type I Ribosome inactivating protein complexed with Trehalose at 1.70 A resolution To be Published
7QH6	Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1 分子名称: 16S ribosomal RNA, 39S ribosomal protein L13, mitochondrial, ... 著者 Rebelo-Guiomar, P, Pellegrino, S, Dent, K.C, Warren, A.J, Minczuk, M. 登録日 2021-12-10 公開日 2022-03-02 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.08 Å) 主引用文献 A late-stage assembly checkpoint of the human mitochondrial ribosome large subunit. Nat Commun, 13, 2022
6ZU5	Structure of the Paranosema locustae ribosome in complex with Lso2 分子名称: 18S rRNA, 25S rRNA, 5S rRNA, ... 著者 Ehrenbolger, K, Jespersen, N, Sharma, H, Sokolova, Y.Y, Tokarev, Y.S, Vossbrinck, C.R, Barandun, J. 登録日 2020-07-21 公開日 2020-11-04 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Differences in structure and hibernation mechanism highlight diversification of the microsporidian ribosome. Plos Biol., 18, 2020
4JYA	Crystal structures of pseudouridinilated stop codons with ASLs 分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Fernandez, I.S, Ng, C.L, Kelley, A.C, Guowei, W, Yu, Y.T, Ramakrishnan, V. 登録日 2013-03-29 公開日 2013-06-26 最終更新日 2013-08-21 実験手法 X-RAY DIFFRACTION (3.098 Å) 主引用文献 Unusual base pairing during the decoding of a stop codon by the ribosome. Nature, 500, 2013
4JV5	Crystal structures of pseudouridinilated stop codons with ASLs 分子名称: 16S ribosomal RNA, 30S ribosomal protein 20, 30S ribosomal protein S10, ... 著者 Fernandez, I.S, Ng, C.L, Kelley, A.C, Guowei, W, Yu, Y.T, Ramakrishnan, V. 登録日 2013-03-25 公開日 2013-06-26 最終更新日 2013-08-21 実験手法 X-RAY DIFFRACTION (3.162 Å) 主引用文献 Unusual base pairing during the decoding of a stop codon by the ribosome. Nature, 500, 2013
1DGZ	RIBOSMAL PROTEIN L36 FROM THERMUS THERMOPHILUS: NMR STRUCTURE ENSEMBLE 分子名称: PROTEIN (L36 RIBOSOMAL PROTEIN), ZINC ION 著者 Hard, T, Rak, A, Allard, P, Kloo, L, Garber, M. 登録日 1999-11-27 公開日 1999-12-08 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The solution structure of ribosomal protein L36 from Thermus thermophilus reveals a zinc-ribbon-like fold. J.Mol.Biol., 296, 2000
1MI6	Docking of the modified RF2 X-ray structure into the Low Resolution Cryo-EM map of RF2 E.coli 70S Ribosome 分子名称: peptide chain release factor RF-2 著者 Rawat, U.B.S, Zavialov, A.V, Sengupta, J, Valle, M, Grassucci, R.A, Linde, J, Vestergaard, B, Ehrenberg, M, Frank, J. 登録日 2002-08-22 公開日 2003-01-14 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (12.8 Å) 主引用文献 A cryo-electron microscopic study of ribosome-bound termination factor RF2 Nature, 421, 2003
1PC8	Crystal Structure of a novel form of mistletoe lectin from Himalayan Viscum album L. at 3.8A resolution 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Himalayan mistletoe ribosome-inactivating protein, ... 著者 Mishra, V, Ethayathulla, A.S, Paramasivam, M, Singh, G, Yadav, S, Kaur, P, Sharma, R.S, Babu, C.R, Singh, T.P. 登録日 2003-05-16 公開日 2004-06-22 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 Structure of a novel ribosome-inactivating protein from a hemi-parasitic plant inhabiting the northwestern Himalayas. Acta Crystallogr.,Sect.D, 60, 2004
4V7F	Arx1 pre-60S particle. 分子名称: 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Leidig, C, Thoms, M, Holdermann, I, Bradatsch, B, Berninghausen, O, Bange, G, Sinning, I, Hurt, E, Beckmann, R. 登録日 2013-12-10 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (8.7 Å) 主引用文献 60S ribosome biogenesis requires rotation of the 5S ribonucleoprotein particle. Nat Commun, 5, 2014
4UTQ	A structural model of the active ribosome-bound membrane protein insertase YidC 分子名称: ATP SYNTHASE SUBUNIT C, MEMBRANE PROTEIN INSERTASE YIDC 著者 Wickles, S, Singharoy, A, Andreani, J, Seemayer, S, Bischoff, L, Berninghausen, O, Soeding, J, Schulten, K, vanderSluis, E.O, Beckmann, R. 登録日 2014-07-22 公開日 2014-07-30 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (8 Å) 主引用文献 A Structural Model of the Active Ribosome-Bound Membrane Protein Insertase Yidc. Elife, 3, 2014
3J5L	Structure of the E. coli 50S subunit with ErmBL nascent chain 分子名称: 23S ribsomal RNA, 5'-R(*CP*(MA6))-3', 5'-R(*CP*CP*A)-3', ... 著者 Arenz, S, Ramu, H, Gupta, P, Berninghausen, O, Beckmann, R, Vazquez-Laslop, N, Mankin, A.S, Wilson, D.N. 登録日 2013-10-23 公開日 2014-03-26 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (6.6 Å) 主引用文献 Molecular basis for erythromycin-dependent ribosome stalling during translation of the ErmBL leader peptide. Nat Commun, 5, 2014
3J7Z	Structure of the E. coli 50S subunit with ErmCL nascent chain 分子名称: 23S rRNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ... 著者 Arenz, S, Meydan, S, Starosta, A.L, Berninghausen, O, Beckmann, R, Vazquez-Laslop, N, Wilson, D.N. 登録日 2014-08-27 公開日 2014-10-22 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Drug Sensing by the Ribosome Induces Translational Arrest via Active Site Perturbation. Mol.Cell, 56, 2014
1Y1N	Identification of SH3 motif in M. Tuberculosis methionine aminopeptidase suggests a mode of interaction with the ribosome 分子名称: Methionine aminopeptidase 1B, POTASSIUM ION 著者 Addlagatta, A, Quillin, M.L, Omotoso, O, Liu, J.O, Matthews, B.W. 登録日 2004-11-18 公開日 2005-05-24 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 Identification of an SH3-Binding Motif in a New Class of Methionine Aminopeptidases from Mycobacterium tuberculosis Suggests a Mode of Interaction with the Ribosome Biochemistry, 44, 2005
4V65	Structure of the E. coli ribosome in the Pre-accommodation state 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Devkota, B, Caulfield, T.R, Tan, R.-Z, Harvey, S.C. 登録日 2008-08-03 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (9 Å) 主引用文献 The Structure of the E. coli Ribosome Before and After Accommodation: Implications for Proofreading To be Published
8RQ0	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II 分子名称: 23S ribosomal RNA, 5S ribosomal RNA, Apidaecins type 88, ... 著者 Lauer, S, Nikolay, R, Spahn, C. 登録日 2024-01-17 公開日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.44 Å) 主引用文献 Multimodal binding and inhibition of bacterial ribosomes by the antimicrobial peptides Api137 and Api88. Nat Commun, 15, 2024
8RPY	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137 分子名称: 23S ribosomal RNA, 5S ribosomal RNA, Apidaecins type 137, ... 著者 Lauer, S, Nikolay, R, Spahn, C. 登録日 2024-01-17 公開日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.64 Å) 主引用文献 Multimodal binding and inhibition of bacterial ribosomes by the antimicrobial peptides Api137 and Api88. Nat Commun, 15, 2024
8RQ2	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III 分子名称: 23S ribosomal RNA, 5S ribosomal RNA, Apidaecins type 88, ... 著者 Lauer, S, Nikolay, R, Spahn, C. 登録日 2024-01-17 公開日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.44 Å) 主引用文献 Multimodal binding and inhibition of bacterial ribosomes by the antimicrobial peptides Api137 and Api88. Nat Commun, 15, 2024
8RPZ	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I 分子名称: 23S ribosomal RNA, 5S ribosomal RNA, Apidaecins type 88, ... 著者 Lauer, S, Nikolay, R, Spahn, C. 登録日 2024-01-17 公開日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.44 Å) 主引用文献 Multimodal binding and inhibition of bacterial ribosomes by the antimicrobial peptides Api137 and Api88. Nat Commun, 15, 2024
6IY7	E. coli peptide deformylase crystal structure fitted into the cryo-EM density map of E. coli 70S ribosome in complex with peptide deformylase 分子名称: Peptide deformylase 著者 Sengupta, J, Akbar, S, Bhakta, S. 登録日 2018-12-13 公開日 2019-04-17 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (10.5 Å) 主引用文献 Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit. J. Mol. Biol., 431, 2019

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