PDB: 66724 件ウェブページステータス検索Chemie searchBIRD

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5X86	Crystal structure of TMP bound thymidylate kinase from thermus thermophilus HB8 分子名称: CHLORIDE ION, MAGNESIUM ION, THYMIDINE-5'-PHOSPHATE, ... 著者 Chaudhary, S.K, Jeyakanthan, J, Sekar, K. 登録日 2017-03-01 公開日 2018-03-14 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.19 Å) 主引用文献 Structural and functional roles of dynamically correlated residues in thymidylate kinase. Acta Crystallogr D Struct Biol, 74, 2018
5A8Q	Crystal structure beta-glucanase SdGluc5_26A from Saccharophagus degradans in complex with tetrasaccharide A obtained by soaking 分子名称: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ... 著者 Sulzenbacher, G, Lafond, M, Freyd, T, Henrissat, B, Coutinho, R.M, Berrin, J.G, Garron, M.L. 登録日 2015-07-16 公開日 2016-01-20 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The Quaternary Structure of a Glycoside Hydrolase Dictates Specificity Towards Beta-Glucans J.Biol.Chem., 291, 2016
5A6Z	Structure of the LecB lectin from Pseudomonas aeruginosa strain PA14 in complex with lewis a 分子名称: CALCIUM ION, DI(HYDROXYETHYL)ETHER, LECB, ... 著者 Sommer, R, Wagner, S, Varrot, A, Khaledi, A, Haussler, S, Imberty, A, Titz, A. 登録日 2015-07-02 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 The virulence factor LecB varies in clinical isolates: consequences for ligand binding and drug discovery. Chem Sci, 7, 2016
6JEV	K2U bound crystal structure of class I type a peptide deformylase from Acinetobacter baumanii 分子名称: (3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic acid, Peptide deformylase, ZINC ION 著者 Lee, I.H, Ho, T.H, Kang, L.W. 登録日 2019-02-07 公開日 2020-02-12 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 K2U bound crystal peptide deformylase from Acinetobacter baumanii To be published
4GOP	Structure and Conformational Change of a Replication Protein A Heterotrimer Bound to ssDNA 分子名称: DNA (25-MER), Putative uncharacterized protein, ZINC ION 著者 Pavletich, N.P, Jie, F. 登録日 2012-08-20 公開日 2012-11-28 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structure and conformational change of a replication protein A heterotrimer bound to ssDNA. Genes Dev., 26, 2012
5A8P	Crystal structure beta-glucanase SdGluc5_26A from Saccharophagus degradans in complex with tetrasaccharide B 分子名称: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ... 著者 Sulzenbacher, G, Lafond, M, Freyd, T, Henrissat, B, Coutinho, R.M, Berrin, J.G, Garron, M.L. 登録日 2015-07-16 公開日 2016-01-20 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The Quaternary Structure of a Glycoside Hydrolase Dictates Specificity Towards Beta-Glucans J.Biol.Chem., 291, 2016
8D84	E. faecium MurAA in complex with UDP-N-acetylmuramic acid (UNAM) and a covalent adduct of PEP with Cys119 分子名称: (2R)-2-{[(2R,3R,4R,5S,6R)-3-(acetylamino)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}propanoic acid, UDP-N-acetylglucosamine 1-carboxyvinyltransferase 著者 Zhou, Y, Shamoo, Y. 登録日 2022-06-07 公開日 2023-07-05 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 E. faecium MurAA in complex with fosfomycin and UNAG To Be Published
4GPH	Structure of HmuO, heme oxygenase from Corynebacterium diphtheriae, in complex with the putative reaction intermediates between Fe3+-biliverdin and biliverdin (data set IV) 分子名称: ASCORBIC ACID, BILIVERDINE IX ALPHA, FE (III) ION, ... 著者 Unno, M, Ikeda-Saito, M. 登録日 2012-08-21 公開日 2013-08-21 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal Structures of the Substrate-Free and the Product-Bound forms of HmuO, a Heme Oxygenase from Corynebacterium diphtheriae To be Published
4GNQ	Structure of rat cytosolic PEPCK Ld_3g in complex with oxalate and GTP 分子名称: GUANOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, OXALATE ION, ... 著者 Johnson, T.A, Holyoak, T. 登録日 2012-08-17 公開日 2013-07-03 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 The {Omega}-loop lid domain of phosphoenolpyruvate carboxykinase is essential for catalytic function. Biochemistry, 51, 2012
4WKB	Crystal structure of Vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with methylthio-DADMe-Immucillin-A 分子名称: (3R,4S)-1-[(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)METHYL]-4-[(METHYLSULFANYL)METHYL]PYRROLIDIN-3-OL, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 著者 Cameron, S.A, Thomas, K, Almo, S.C, Schramm, V.L. 登録日 2014-10-02 公開日 2015-08-19 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.37 Å) 主引用文献 Active site and remote contributions to catalysis in methylthioadenosine nucleosidases. Biochemistry, 54, 2015
4WKI	Crystal structure of human ADAMTS-4 in complex with inhibitor 5-CHLORO-N-{[(4S)-4-(1-METHYL-1H-IMIDAZOL-2-YL)-2,5-DIOXOIMIDAZOLIDIN-4-YL]METHYL}-1-BENZOFURAN-2-CARBOXAMIDE (compound 11) 分子名称: 1,2-ETHANEDIOL, 5-chloro-N-{[(4S)-4-(1-methyl-1H-imidazol-2-yl)-2,5-dioxoimidazolidin-4-yl]methyl}-1-benzofuran-2-carboxamide, A disintegrin and metalloproteinase with thrombospondin motifs 4, ... 著者 Durbin, J.D. 登録日 2014-10-02 公開日 2014-12-10 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Identification of potent and selective hydantoin inhibitors of aggrecanase-1 and aggrecanase-2 that are efficacious in both chemical and surgical models of osteoarthritis. J.Med.Chem., 57, 2014
4WO2	CRYSTAL STRUCTURE OF HUMAN NATIVE CKIT PROTO-ONCOGENE PROMOTER QUADRUPLEX DNA 分子名称: DNA (5'-D(*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*CP*TP*GP*GP*GP*AP*GP*GP*AP*GP*GP*G)-3'), POTASSIUM ION 著者 wei, D, parkinson, g.n, neidle, s. 登録日 2014-10-15 公開日 2014-10-22 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.82 Å) 主引用文献 CRYSTAL STRUCTURE OF HUMAN NATIVE CKIT-1 PROTO-ONCOGENE PROMOTER QUADRUPLEX DNA TO BE PUBLISHED
6JGA	Crystal structure of barley exohydrolaseI W286F in complex with 4'-nitrophenyl thiolaminaribioside 分子名称: (2~{R},3~{S},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-4-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanyl-oxane-2,3,5-triol, 2-acetamido-2-deoxy-beta-D-glucopyranose, BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1, ... 著者 Luang, S, Streltsov, V.A, Hrmova, M. 登録日 2019-02-13 公開日 2020-08-19 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun, 13, 2022
4GNJ	Crystal Structure Analysis of Leishmania siamensis Triosephosphate Isomerase 分子名称: ARSENIC, SODIUM ION, Triosephosphate isomerase 著者 Kuaprasert, B, Riangrungroj, P, Pornthanakasem, W, Suginta, W, Mungthin, M, Leelayoova, S, Leartsakulpanich, U. 登録日 2012-08-17 公開日 2013-09-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Crystal Structure Analysis of Leishmania siamensis Triosephosphate Isomerase To be Published
5AC4	GH20C, Beta-hexosaminidase from Streptococcus pneumoniae in complex with GalNAc 分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, N-ACETYL-BETA-D-GLUCOSAMINIDASE 著者 Cid, M, Robb, C.S, Higgins, M.A, Boraston, A.B. 登録日 2015-08-11 公開日 2015-09-23 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.08 Å) 主引用文献 A Second beta-Hexosaminidase Encoded in the Streptococcus pneumoniae Genome Provides an Expanded Biochemical Ability to Degrade Host Glycans. J. Biol. Chem., 290, 2015
4GNX	Structure of U. maydis Replication protein A bound to ssDNA 分子名称: DNA (25-MER), Putative uncharacterized protein, ZINC ION 著者 Pavletich, N.P, Fan, J. 登録日 2012-08-17 公開日 2013-02-20 最終更新日 2013-07-24 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure of To be Published
5XAU	Crystal structure of integrin binding fragment of laminin-511 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... 著者 Takizawa, M, Arimori, T, Kitago, Y, Takagi, J, Sekiguchi, K. 登録日 2017-03-15 公開日 2017-09-20 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Mechanistic basis for the recognition of laminin-511 by alpha 6 beta 1 integrin. Sci Adv, 3, 2017
5ACB	Crystal Structure of the Human Cdk12-Cyclink Complex 分子名称: CYCLIN-DEPENDENT KINASE 12, CYCLIN-K, N-[4-[(3R)-3-[[5-chloranyl-4-(1H-indol-3-yl)pyrimidin-2-yl]amino]piperidin-1-yl]carbonylphenyl]-4-(dimethylamino)butanamide 著者 Dixon Clarke, S.E, Elkins, J.M, Pike, A.C.W, Mackenzie, A, Goubin, S, Strain-Damerell, C, Mahajan, P, Tallant, C, Chalk, R, Wiggers, H, Kopec, J, Fitzpatrick, F, Burgess-Brown, N, Carpenter, E.P, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Bullock, A. 登録日 2015-08-14 公開日 2016-06-15 最終更新日 2016-10-05 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Covalent Targeting of Remote Cysteine Residues to Develop Cdk12 and Cdk13 Inhibitors. Nat.Chem.Biol., 12, 2016
4WM2	High pressure protein crystallography of hen egg white lysozyme at 600 MPa 分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION 著者 Yamada, H, Nagae, T, Watanabe, N. 登録日 2014-10-08 公開日 2015-04-08 最終更新日 2019-04-03 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 High-pressure protein crystallography of hen egg-white lysozyme Acta Crystallogr.,Sect.D, 71, 2015
4GOL	Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM 分子名称: DNA adenine methylase, S-5'-AZAMETHIONINE-5'-DEOXYADENOSINE 著者 Harmer, J.E, Roach, P.L. 登録日 2012-08-20 公開日 2014-02-26 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.57 Å) 主引用文献 Structural Basis of Selective N-6 adenine methyltransferase Inhibition by Transition State Mimic To be Published
6JJH	Crystal structure of a two-quartet RNA parallel G-quadruplex complexed with the porphyrin TMPyP4 分子名称: (1Z,4Z,9Z,15Z)-5,10,15,20-tetrakis(1-methylpyridin-1-ium-4-yl)-21,23-dihydroporphyrin, POTASSIUM ION, RNA (5'-R(*GP*GP*CP*UP*CP*GP*GP*CP*GP*GP*CP*GP*GP*A)-3') 著者 Zhang, Y.S, EI Omari, K, Duman, R, Wagner, A, Parkinson, G.N, Wei, D.G. 登録日 2019-02-25 公開日 2020-02-26 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.74 Å) 主引用文献 Native de novo structural determinations of non-canonical nucleic acid motifs by X-ray crystallography at long wavelengths. Nucleic Acids Res., 48, 2020
4WPZ	Crystal structure of cytochrome P450 CYP107W1 from Streptomyces avermitilis 分子名称: Cytochrome P450, POTASSIUM ION, PROTOPORPHYRIN IX CONTAINING FE 著者 Kang, L.W, Kim, D.H, Pham, T.V, Han, S.H. 登録日 2014-10-21 公開日 2015-04-22 最終更新日 2015-04-29 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Functional characterization of CYP107W1 from Streptomyces avermitilis and biosynthesis of macrolide oligomycin A. Arch.Biochem.Biophys., 575, 2015
6JK4	Ca2+-dependent type II antifreeze protein 分子名称: CALCIUM ION, Type II antifreeze protein 著者 Arai, T, Tsuda, S, Kondo, H, Nishimiya, Y. 登録日 2019-02-27 公開日 2019-06-26 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.06 Å) 主引用文献 Calcium-Binding Generates the Semi-Clathrate Waters on a Type II Antifreeze Protein to Adsorb onto an Ice Crystal Surface. Biomolecules, 9, 2019
5AEE	A bacterial protein structure in glycoside hydrolase family 31 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 4-nitrophenyl alpha-D-6-sulfoquinovoside, ALPHA-GLUCOSIDASE YIHQ, ... 著者 Jin, Y, Speciale, G, Davies, G.J, Williams, S.J, Goddard-Borger, E.D. 登録日 2015-08-28 公開日 2016-02-10 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Yihq is a Sulfoquinovosidase that Cleaves Sulfoquinovosyl Diacylglyceride Sulfolipids. Nat.Chem.Biol., 12, 2016
4WMA	Crystal structure of mouse Xyloside xylosyltransferase 1 complexed with manganese,acceptor ligand and UDP-Glucose 分子名称: Coagulation factor IX, MANGANESE (II) ION, SULFATE ION, ... 著者 Yu, H, Li, H. 登録日 2014-10-08 公開日 2015-09-30 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Notch-modifying xylosyltransferase structures support an SNi-like retaining mechanism. Nat.Chem.Biol., 11, 2015

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