PDB: 7386 件ウェブページステータス検索Chemie searchBIRD

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4V76	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Blau, C, Bock, L.V, Schroder, G.F, Davydov, I, Fischer, N, Stark, H, Rodnina, M.V, Vaiana, A.C, Grubmuller, H. 登録日 2013-10-14 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (17 Å) 主引用文献 Energy barriers and driving forces in tRNA translocation through the ribosome. Nat.Struct.Mol.Biol., 20, 2013
4V75	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Blau, C, Bock, L.V, Schroder, G.F, Davydov, I, Fischer, N, Stark, H, Rodnina, M.V, Vaiana, A.C, Grubmuller, H. 登録日 2013-10-14 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (12 Å) 主引用文献 Energy barriers and driving forces in tRNA translocation through the ribosome. Nat.Struct.Mol.Biol., 20, 2013
4V78	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Blau, C, Bock, L.V, Schroder, G.F, Davydov, I, Fischer, N, Stark, H, Rodnina, M.V, Vaiana, A.C, Grubmuller, H. 登録日 2013-10-14 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (20 Å) 主引用文献 Energy barriers and driving forces in tRNA translocation through the ribosome. Nat.Struct.Mol.Biol., 20, 2013
4V73	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Blau, C, Bock, L.V, Schroder, G.F, Davydov, I, Fischer, N, Stark, H, Rodnina, M.V, Vaiana, A.C, Grubmuller, H. 登録日 2013-10-14 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (15 Å) 主引用文献 Energy barriers and driving forces in tRNA translocation through the ribosome. Nat.Struct.Mol.Biol., 20, 2013
4V71	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Blau, C, Bock, L.V, Schroder, G.F, Davydov, I, Fischer, N, Stark, H, Rodnina, M.V, Vaiana, A.C, Grubmuller, H. 登録日 2013-10-14 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (20 Å) 主引用文献 Energy barriers and driving forces in tRNA translocation through the ribosome. Nat.Struct.Mol.Biol., 20, 2013
4V74	70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Blau, C, Bock, L.V, Schroder, G.F, Davydov, I, Fischer, N, Stark, H, Rodnina, M.V, Vaiana, A.C, Grubmuller, H. 登録日 2013-10-14 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (17 Å) 主引用文献 Energy barriers and driving forces in tRNA translocation through the ribosome. Nat.Struct.Mol.Biol., 20, 2013
3J92	Structure and assembly pathway of the ribosome quality control complex 分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Shao, S, Brown, A, Santhanam, B, Hegde, R.S. 登録日 2014-12-02 公開日 2015-01-21 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structure and Assembly Pathway of the Ribosome Quality Control Complex. Mol.Cell, 57, 2015
2OTL	Girodazole bound to the large subunit of Haloarcula marismortui 分子名称: 23S ribosomal RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ... 著者 Blaha, G, Schroeder, S.J, Tirado-Rives, J. 登録日 2007-02-08 公開日 2007-04-03 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 The Structures of Antibiotics Bound to the E Site Region of the 50 S Ribosomal Subunit of Haloarcula marismortui: 13-Deoxytedanolide and Girodazole. J.Mol.Biol., 367, 2007
6RBE	State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles 分子名称: 18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ... 著者 Shayan, R, Mitterer, V, Ferreira-Cerca, S, Murat, G, Enne, T, Rinaldi, D, Weigl, S, Omanic, H, Gleizes, P.E, Kressler, D, Pertschy, B, Plisson-Chastang, C. 登録日 2019-04-10 公開日 2019-06-26 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Conformational proofreading of distant 40S ribosomal subunit maturation events by a long-range communication mechanism. Nat Commun, 10, 2019
2OTJ	13-deoxytedanolide bound to the large subunit of Haloarcula marismortui 分子名称: 13-DEOXYTEDANOLIDE, 23S ribosomal RNA, 50S ribosomal protein L10E, ... 著者 Blaha, G, Schroeder, S.J, Tirado-Rives, J. 登録日 2007-02-08 公開日 2007-04-03 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 The Structures of Antibiotics Bound to the E Site Region of the 50 S Ribosomal Subunit of Haloarcula marismortui: 13-Deoxytedanolide and Girodazole. J.Mol.Biol., 367, 2007
3N3X	Crystal Structure of the complex formed between type I ribosome inactivating protein and hexapeptide Ser-Asp-Asp-Asp-Met-Gly at 1.7 A resolution 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GUANINE, Ribosome inactivating protein, ... 著者 Kushwaha, G.S, Vikram, G, Sinha, M, Kaur, P, Sharma, S, Singh, T.P. 登録日 2010-05-20 公開日 2010-06-30 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal Structure of the complex formed between type I ribosome inactivating protein and hexapeptide Ser-Asp-Asp-Asp-Met-Gly at 1.7 A resolution To be Published
3IZD	Model of the large subunit RNA expansion segment ES27L-out based on a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome. 3IZD is a small part (an expansion segment) which is in an alternative conformation to what is in already 3IZF. 分子名称: rRNA expansion segment ES27L in an "out" conformation 著者 Armache, J.-P, Jarasch, A, Anger, A.M, Villa, E, Becker, T, Bhushan, S, Jossinet, F, Habeck, M, Dindar, G, Franckenberg, S, Marquez, V, Mielke, T, Thomm, M, Berninghausen, O, Beatrix, B, Soeding, J, Westhof, E, Wilson, D.N, Beckmann, R. 登録日 2010-10-13 公開日 2010-12-01 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (8.6 Å) 主引用文献 Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution. Proc.Natl.Acad.Sci.USA, 107, 2010
5AOX	Human Alu RNA retrotransposition complex in the ribosome-stalling conformation 分子名称: ACETATE ION, ALU JO CONSENSUS RNA, DI(HYDROXYETHYL)ETHER, ... 著者 Ahl, V, Weichenrieder, O. 登録日 2015-09-12 公開日 2015-11-11 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Retrotransposition and Crystal Structure of an Alu Rnp in the Ribosome-Stalling Conformation. Mol.Cell, 60, 2015
8E5T	Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate 分子名称: 25S ribosomal RNA, 5.8S ribosomal RNA, 60S ribosomal protein L13-A, ... 著者 Sanghai, Z.A, Piwowarczyk, R, Vanden Broeck, A, Klinge, S. 登録日 2022-08-22 公開日 2023-04-12 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 A co-transcriptional ribosome assembly checkpoint controls nascent large ribosomal subunit maturation. Nat.Struct.Mol.Biol., 30, 2023
7A5J	Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs 分子名称: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... 著者 Desai, N, Yang, H, Chandrasekaran, V, Kazi, R, Minczuk, M, Ramakrishnan, V. 登録日 2020-08-21 公開日 2020-12-23 最終更新日 2023-03-15 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Elongational stalling activates mitoribosome-associated quality control. Science, 370, 2020
7Z34	Structure of pre-60S particle bound to DRG1(AFG2). 分子名称: 35S pre-ribosomal RNA, 5.8S rRNA, 5S rRNA, ... 著者 Prattes, M, Grishkovskaya, I, Bergler, H, Haselbach, D. 登録日 2022-03-01 公開日 2022-09-21 最終更新日 2023-07-19 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Visualizing maturation factor extraction from the nascent ribosome by the AAA-ATPase Drg1. Nat.Struct.Mol.Biol., 29, 2022
7A5H	Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1 分子名称: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... 著者 Desai, N, Yang, H, Chandrasekaran, V, Kazi, R, Minczuk, M, Ramakrishnan, V. 登録日 2020-08-21 公開日 2020-12-23 最終更新日 2023-03-01 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Elongational stalling activates mitoribosome-associated quality control. Science, 370, 2020
3U8F	Crystal structure of the complex of type I Ribosome inactivating protein in complex with Mycolic acid at 1.8 A resolution 分子名称: (2R,3R)-2-hexyl-3-hydroxytridecanoic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ... 著者 Yamini, S, Pandey, S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P. 登録日 2011-10-17 公開日 2011-11-16 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structure of the complex of type I Ribosome inactivating protein in complex with Mycolic acid at 1.8 A resolution To be Published
8PV2	Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1 分子名称: 26S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. 登録日 2023-07-17 公開日 2023-11-15 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (2.63 Å) 主引用文献 Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
3U6T	Crystal structure of the complex of type I Ribosome inactivating protein in complex with Kanamycin at 1.85 A 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, KANAMYCIN A, ... 著者 Yamini, S, Pandey, S, Kushwaha, G.S, Sinha, M, Bhushan, A, Kaur, P, Sharma, S, Singh, T.P. 登録日 2011-10-13 公開日 2011-11-16 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Crystal structure of the complex of type I Ribosome inactivating protein in complex with Kanamycin at 1.85 A To be Published
3IZQ	Structure of the Dom34-Hbs1-GDPNP complex bound to a translating ribosome 分子名称: Elongation factor 1 alpha-like protein, Protein DOM34 著者 Becker, T, Armache, J.-P, Jarasch, A, Anger, A.M, Villa, E, Sieber, H, Abdel Motaal, B, Mielke, T, Berninghausen, O, Beckmann, R. 登録日 2010-11-30 公開日 2011-06-01 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (9.5 Å) 主引用文献 Structure of the no-go mRNA decay complex Dom34-Hbs1 bound to a stalled 80S ribosome. Nat.Struct.Mol.Biol., 18, 2011
4V92	Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES 分子名称: 18S RRNA, ES1, ES10, ... 著者 Fernandez, I.S, Bai, X, Scheres, S.H.W, Ramakrishnan, V. 登録日 2014-03-21 公開日 2014-07-09 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Initiation of Translation by Cricket Paralysis Virus Ires Requires its Translocation in the Ribosome. Cell(Cambridge,Mass.), 157, 2014
6WOO	CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 5.8S ribosomal rRNA, ... 著者 Wang, J, Wang, J, Puglisi, J, Fernandez, I.S. 登録日 2020-04-25 公開日 2020-09-23 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 An active role of the eukaryotic large ribosomal subunit in translation initiation fidelity. To Be Published
6RBD	State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles 分子名称: 20S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ... 著者 Shayan, R, Mitterer, V, Ferreira-Cerca, S, Murat, G, Enne, T, Rinaldi, D, Weigl, S, Omanic, H, Gleizes, P.E, Kressler, D, Pertschy, B, Plisson-Chastang, C. 登録日 2019-04-10 公開日 2019-06-26 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.47 Å) 主引用文献 Conformational proofreading of distant 40S ribosomal subunit maturation events by a long-range communication mechanism. Nat Commun, 10, 2019
8PV5	Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure 分子名称: 26S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. 登録日 2023-07-17 公開日 2023-11-15 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023

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