PDB: 95574 件ウェブページステータス検索Chemie searchBIRD

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8QJQ	SmNuc1 nuclease from Stenotrophomonas maltophilia in complex with cytidine - 5' - monophosphate as an inhibitor. 分子名称: CYTIDINE-5'-MONOPHOSPHATE, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... 著者 Adamkova, K, Koval, T, Kolenko, P, Dohnalek, J. 登録日 2023-09-13 公開日 2024-09-25 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Substrate preference, RNA binding and active site versatility of the Stenotrophomonas maltophilia nuclease SmNuc1, explained by a structural study The FEBS Journal, 2024
1CAR	I-CARRAGEENAN. MOLECULAR STRUCTURE AND PACKING OF POLYSACCHARIDE DOUBLE HELICES IN ORIENTED FIBRES OF DIVALENT CATION SALTS 分子名称: 4-O-sulfo-beta-D-galactopyranose-(1-4)-3,6-anhydro-2-O-sulfo-alpha-D-galactopyranose-(1-3)-4-O-sulfo-beta-D-galactopyranose-(1-4)-3,6-anhydro-2-O-sulfo-alpha-D-galactopyranose-(1-3)-4-O-sulfo-beta-D-galactopyranose-(1-4)-3,6-anhydro-2-O-sulfo-alpha-D-galactopyranose 著者 Arnott, S. 登録日 1978-05-23 公開日 1980-03-28 最終更新日 2024-02-07 実験手法 FIBER DIFFRACTION (3 Å) 主引用文献 Iota-carrageenan: molecular structure and packing of polysaccharide double helices in oriented fibres of divalent cation salts. J.Mol.Biol., 90, 1974
3BT0	Crystal structure of transthyretin variant V20S 分子名称: Transthyretin 著者 Zanotti, G, Folli, C, Cendron, L, Gliubich, F, Negro, A, Berni, R. 登録日 2007-12-27 公開日 2008-11-11 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.59 Å) 主引用文献 Structural and mutational analyses of protein-protein interactions between transthyretin and retinol-binding protein. Febs J., 275, 2008
3BSZ	Crystal structure of the transthyretin-retinol binding protein-Fab complex 分子名称: Fab fragment heavy chain, Fab fragment light chain, Plasma retinol-binding protein, ... 著者 Zanotti, G, Cendron, L, Gliubich, F, Folli, C, Berni, R. 登録日 2007-12-27 公開日 2008-11-11 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.38 Å) 主引用文献 Structural and mutational analyses of protein-protein interactions between transthyretin and retinol-binding protein. Febs J., 275, 2008
1AQB	RETINOL-BINDING PROTEIN (RBP) FROM PIG PLASMA 分子名称: CADMIUM ION, RETINOL, RETINOL-BINDING PROTEIN 著者 Zanotti, G, Panzalorto, M, Marcato, A, Malpeli, G, Folli, C, Berni, R. 登録日 1997-07-28 公開日 1998-01-28 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Structure of pig plasma retinol-binding protein at 1.65 A resolution. Acta Crystallogr.,Sect.D, 54, 1998
1AGA	THE AGAROSE DOUBLE HELIX AND ITS FUNCTION IN AGAROSE GEL STRUCTURE 分子名称: beta-D-galactopyranose-(1-4)-3,6-anhydro-alpha-L-galactopyranose-(1-3)-beta-D-galactopyranose-(1-4)-3,6-anhydro-alpha-L-galactopyranose-(1-3)-beta-D-galactopyranose-(1-4)-3,6-anhydro-alpha-L-galactopyranose 著者 Arnott, S. 登録日 1978-05-23 公開日 1980-03-28 最終更新日 2024-02-07 実験手法 FIBER DIFFRACTION (3 Å) 主引用文献 The agarose double helix and its function in agarose gel structure. J.Mol.Biol., 90, 1974
1AOW	ANNEXIN IV 分子名称: ANNEXIN IV 著者 Zanotti, G, Malpeli, G, Gliubich, F, Folli, C, Stoppini, M, Olivi, L, Savoia, A, Berni, R. 登録日 1997-07-11 公開日 1998-01-14 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structure of the trigonal crystal form of bovine annexin IV. Biochem.J., 329, 1998
7AX1	Crystal structure of the human CCR4-CAF1 complex 分子名称: CCR4-NOT transcription complex subunit 6, CCR4-NOT transcription complex subunit 7, MAGNESIUM ION 著者 Chen, Y, Khazina, E, Weichenrieder, O. 登録日 2020-11-09 公開日 2021-05-12 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Crystal structure and functional properties of the human CCR4-CAF1 deadenylase complex. Nucleic Acids Res., 49, 2021
4ZZQ	Dictyostelium discoideum cellobiohydrolase Cel7A apo structure 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CELLULOSE 1,4-BETA-CELLOBIOSIDASE, DI(HYDROXYETHYL)ETHER 著者 Momeni, M.H, Hobdey, S.E, Knott, B, Beckham, G.T, Stahlberg, J. 登録日 2015-04-13 公開日 2016-04-13 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Biochemical and Structural Characterization of Two Dictyostelium Cellobiohydrolases from the Amoebozoa Kingdom Reveal a High Conservation between Distant Phylogenetic Trees of Life. Appl.Environ.Microbiol., 82, 2016
3CWY	Structure of CagD from H. pylori pathogenicity island crystallized in the presence of Cu(II) ions 分子名称: COPPER (II) ION, protein CagD 著者 Cendron, L, Zanotti, G, Angelini, A, Barison, N, Couturier, M, Stein, M. 登録日 2008-04-23 公開日 2008-12-30 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 The Helicobacter pylori CagD (HP0545, Cag24) protein is essential for CagA translocation and maximal induction of interleukin-8 secretion. J.Mol.Biol., 386, 2009
5LSW	A CAF40-binding motif facilitates recruitment of the CCR4-NOT complex to mRNAs targeted by Drosophila Roquin 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Cell differentiation protein RCD1 homolog, LD12033p, ... 著者 Sgromo, A, Raisch, T, Bawankar, P, Bhandari, D, Chen, Y, Kuzuoglu-Ozturk, D, Weichenrieder, O, Izaurralde, E. 登録日 2016-09-05 公開日 2017-02-15 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 A CAF40-binding motif facilitates recruitment of the CCR4-NOT complex to mRNAs targeted by Drosophila Roquin. Nat Commun, 8, 2017
1ELC	Analogous inhibitors of elastase do not always bind analogously 分子名称: 6-ammonio-N-(trifluoroacetyl)-L-norleucyl-N-[4-(1-methylethyl)phenyl]-L-phenylalaninamide, CALCIUM ION, ELASTASE 著者 Mattos, C, Rasmussen, B, Ding, X, Petsko, G.A, Ringe, D. 登録日 1993-12-07 公開日 1994-04-30 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Analogous inhibitors of elastase do not always bind analogously. Nat.Struct.Biol., 1, 1994
1ELA	Analogous inhibitors of elastase do not always bind analogously 分子名称: 6-ammonio-N-(trifluoroacetyl)-L-norleucyl-N-[4-(1-methylethyl)phenyl]-L-prolinamide, ACETIC ACID, CALCIUM ION, ... 著者 Mattos, C, Rasmussen, B, Ding, X, Petsko, G.A, Ringe, D. 登録日 1993-12-07 公開日 1994-04-30 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Analogous inhibitors of elastase do not always bind analogously. Nat.Struct.Biol., 1, 1994
8IGX	SARS-CoV-2 3CL protease (3CLpro) in complex with compound 9 (simnotrelvir, SIM0417, SSD8432) 分子名称: (8~{S})-~{N}-[(1~{S})-1-cyano-2-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]ethyl]-7-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-1,4-dithia-7-azaspiro[4.4]nonane-8-carboxamide, 3C-like proteinase nsp5 著者 Su, H.X, Zhao, W.F, Xie, H, Nie, T.Q, Li, M.J, Xu, Y.C. 登録日 2023-02-21 公開日 2023-10-18 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure-based development and preclinical evaluation of the SARS-CoV-2 3C-like protease inhibitor simnotrelvir. Nat Commun, 14, 2023
2RO0	Solution structure of the knotted tudor domain of the yeast histone acetyltransferase, Esa1 分子名称: Histone acetyltransferase ESA1 著者 Shimojo, H, Sano, N, Moriwaki, Y, Okuda, M, Horikoshi, M, Nishimura, Y. 登録日 2008-03-01 公開日 2008-04-29 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain J.Mol.Biol., 378, 2008
8A55	Structure of N-terminal SARS-CoV-2 nonstructural protein 1 (nsp1) at atomic resolution 分子名称: Host translation inhibitor nsp1 著者 Ma, S, Pinotsis, N, Bowler, M.W, Kozielski, F. 登録日 2022-06-14 公開日 2022-11-23 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (0.99 Å) 主引用文献 Two Ligand-Binding Sites on SARS-CoV-2 Non-Structural Protein 1 Revealed by Fragment-Based X-ray Screening. Int J Mol Sci, 23, 2022
5DAA	E177K MUTANT OF D-AMINO ACID AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAMINE-5'-PHOSPHATE 分子名称: D-AMINO ACID AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE 著者 Peisach, D, Ringe, D. 登録日 1998-12-13 公開日 1998-12-14 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Effects of the E177K mutation in D-amino acid transaminase. Studies on an essential coenzyme anchoring group that contributes to stereochemical fidelity. Biochemistry, 38, 1999
6O9V	KirBac3.1 mutant at a resolution of 3.1 Angstroms 分子名称: 1,1-Methanediyl Bismethanethiosulfonate, DECYLAMINE-N,N-DIMETHYL-N-OXIDE, Inward rectifier potassium channel Kirbac3.1, ... 著者 Gulbis, J.M, Black, K.A, Miller, D.M. 登録日 2019-03-15 公開日 2020-05-27 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.094 Å) 主引用文献 A constricted opening in Kir channels does not impede potassium conduction. Nat Commun, 11, 2020
5NE2	L2 class A serine-beta-lactamase 分子名称: Beta-lactamase, D-GLUTAMIC ACID 著者 Hinchliffe, P, Calvopina, K, Spencer, J. 登録日 2017-03-09 公開日 2017-09-13 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.19 Å) 主引用文献 Structural/mechanistic insights into the efficacy of nonclassical beta-lactamase inhibitors against extensively drug resistant Stenotrophomonas maltophilia clinical isolates. Mol. Microbiol., 106, 2017
5NE1	L2 class A serine-beta-lactamase in complex with cyclic boronate 2 分子名称: (4~{R})-4-[[4-(aminomethyl)phenyl]carbonylamino]-3,3-bis(oxidanyl)-2-oxa-3-boranuidabicyclo[4.4.0]deca-1(10),6,8-triene-10-carboxylic acid, Beta-lactamase, TRIETHYLENE GLYCOL 著者 Hinchliffe, P, Calvopina, K, Spencer, J. 登録日 2017-03-09 公開日 2017-09-13 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.09 Å) 主引用文献 Structural/mechanistic insights into the efficacy of nonclassical beta-lactamase inhibitors against extensively drug resistant Stenotrophomonas maltophilia clinical isolates. Mol. Microbiol., 106, 2017
6SNU	Crystal structure of the W60C mutant of the (S)-selective transaminase from Chromobacterium violaceum 分子名称: 1,2-ETHANEDIOL, Aspartate aminotransferase family protein, PYRIDOXAL-5'-PHOSPHATE 著者 Ruggieri, F, Gustafsson, C, Kimbung, R.Y, Walse, B, Logan, D.T, Berglund, P. 登録日 2019-08-27 公開日 2019-10-09 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal Structures Combined with Molecular Dynamics Reveal Altered Flow of Water in the Active Site of W60C Chromobacterium violaceum omega-transaminase Not Published
5AL8	Transthyretin binding heterogeneity and anti-amyloidogenic activity of natural polyphenols and their metabolites: daidzein-7-O- glucuronide 分子名称: DAIDZEIN-7-O-GLUCURONIDE, TRANSTHYRETIN 著者 Florio, P, Foll, C, Cianci, M, Del Rio, D, Zanotti, G, Berni, R. 登録日 2015-03-06 公開日 2015-10-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Transthyretin Binding Heterogeneity and Anti-Amyloidogenic Activity of Natural Polyphenols and Their Metabolites J.Biol.Chem., 290, 2015
5AKS	Transthyretin binding heterogeneity and anti-amyloidogenic activity of natural polyphenols and their metabolites: resveratrol-3-O- glucuronide 分子名称: DIMETHYL SULFOXIDE, Resveratrol-3-O-glucuronide, SULFATE ION, ... 著者 Florio, P, Foll, C, Cianci, M, Del Rio, D, Zanotti, G, Berni, R. 登録日 2015-03-05 公開日 2015-10-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Transthyretin Binding Heterogeneity and Anti-Amyloidogenic Activity of Natural Polyphenols and Their Metabolites J.Biol.Chem., 290, 2015
5AKT	Transthyretin binding heterogeneity and anti-amyloidogenic activity of natural polyphenols and their metabolites: resveratrol-4'-O- glucuronide 分子名称: Resveratrol-4'-O-glucuronide, SULFATE ION, TRANSTHYRETIN 著者 Florio, P, Folli, C, Cianci, M, Del Rio, D, Zanotti, G, Berni, R. 登録日 2015-03-05 公開日 2015-10-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Transthyretin Binding Heterogeneity and Anti-Amyloidogenic Activity of Natural Polyphenols and Their Metabolites J.Biol.Chem., 290, 2015
5AL0	Transthyretin binding heterogeneity and anti-amyloidogenic activity of natural polyphenols and their metabolites: resveratrol-3-O-sulfate 分子名称: DIMETHYL SULFOXIDE, RESVERATROL-3-O-SULFATE, SULFATE ION, ... 著者 Florio, P, Foll, C, Cianci, M, Del Rio, D, Zanotti, G, Berni, R. 登録日 2015-03-05 公開日 2015-10-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.388 Å) 主引用文献 Transthyretin Binding Heterogeneity and Anti-Amyloidogenic Activity of Natural Polyphenols and Their Metabolites J.Biol.Chem., 290, 2015

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