PDB: 7386 件ウェブページステータス検索Chemie searchBIRD

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8BR8	Giardia ribosome in POST-T state (A1) 分子名称: 40S ribosomal protein S21, 40S ribosomal protein S25, 40S ribosomal protein S26, ... 著者 Majumdar, S, Emmerich, A.G, Sanyal, S. 登録日 2022-11-22 公開日 2023-03-15 最終更新日 2023-05-03 実験手法 ELECTRON MICROSCOPY (3.35 Å) 主引用文献 Insights into translocation mechanism and ribosome evolution from cryo-EM structures of translocation intermediates of Giardia intestinalis. Nucleic Acids Res., 51, 2023
8BRM	Giardia ribosome in POST-T state, no E-site tRNA (A6) 分子名称: 5.8S rRNA, 5S rRNA, Large Subunit rRNA, ... 著者 Majumdar, S, Emmerich, A.G, Sanyal, S. 登録日 2022-11-23 公開日 2023-03-15 最終更新日 2023-05-03 実験手法 ELECTRON MICROSCOPY (3.33 Å) 主引用文献 Insights into translocation mechanism and ribosome evolution from cryo-EM structures of translocation intermediates of Giardia intestinalis. Nucleic Acids Res., 51, 2023
6GBZ	50S ribosomal subunit assembly intermediate state 5 分子名称: 23S ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Nikolay, R, Hilal, T, Qin, B, Loerke, J, Buerger, J, Mielke, T, Spahn, C.M.T. 登録日 2018-04-16 公開日 2018-06-20 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structural Visualization of the Formation and Activation of the 50S Ribosomal Subunit during In Vitro Reconstitution. Mol. Cell, 70, 2018
6GC8	50S ribosomal subunit assembly intermediate - 50S rec* 分子名称: 23S ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Nikolay, R, Hilal, T, Qin, B, Loerke, J, Buerger, J, Mielke, T, Spahn, C.M.T. 登録日 2018-04-17 公開日 2018-06-20 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structural Visualization of the Formation and Activation of the 50S Ribosomal Subunit during In Vitro Reconstitution. Mol. Cell, 70, 2018
8AP4	Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA 分子名称: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Safdari, H.A, Wilson, D.N. 登録日 2022-08-09 公開日 2022-11-16 最終更新日 2022-12-28 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structure of Escherichia coli heat shock protein Hsp15 in complex with the ribosomal 50S subunit bearing peptidyl-tRNA. Nucleic Acids Res., 50, 2022
4V68	T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Schuette, J.-C, Spahn, C.M.T. 登録日 2008-12-11 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (6.4 Å) 主引用文献 GTPase activation of elongation factor EF-Tu by the ribosome during decoding Embo J., 28, 2009
6XHV	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Svetlov, M.S, Syroegin, E.A, Aleksandrova, E.V, Atkinson, G.C, Gregory, S.T, Mankin, A.S, Polikanov, Y.S. 登録日 2020-06-19 公開日 2020-12-23 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of Erm-modified 70S ribosome reveals the mechanism of macrolide resistance. Nat.Chem.Biol., 17, 2021
6XHW	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Svetlov, M.S, Syroegin, E.A, Aleksandrova, E.V, Atkinson, G.C, Gregory, S.T, Mankin, A.S, Polikanov, Y.S. 登録日 2020-06-19 公開日 2020-12-23 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of Erm-modified 70S ribosome reveals the mechanism of macrolide resistance. Nat.Chem.Biol., 17, 2021
7Z20	70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain 分子名称: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Mitropoulou, A, Plessa, E, Wlodarski, T, Ahn, M, Sidhu, H, Becker, T.A, Beckmann, R, Cabrita, L.D, Christodoulou, J. 登録日 2022-02-25 公開日 2022-08-10 実験手法 ELECTRON MICROSCOPY (2.29 Å) 主引用文献 Modulating co-translational protein folding by rational design and ribosome engineering. Nat Commun, 13, 2022
6XE0	Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment) 分子名称: 16s rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Washburn, R, Zuber, P, Sun, M, Hashem, Y, Shen, B, Li, W, Harvey, S, Acosta-Reyes, F.J, Knauer, S.H, Frank, J, Gottesman, M.E. 登録日 2020-06-11 公開日 2020-07-29 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (6.8 Å) 主引用文献 Escherichia coli NusG Links the Lead Ribosome with the Transcription Elongation Complex. Iscience, 23, 2020
6XHY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Svetlov, M.S, Syroegin, E.A, Aleksandrova, E.V, Atkinson, G.C, Gregory, S.T, Mankin, A.S, Polikanov, Y.S. 登録日 2020-06-19 公開日 2020-12-23 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structure of Erm-modified 70S ribosome reveals the mechanism of macrolide resistance. Nat.Chem.Biol., 17, 2021
7ZP8	70S E. coli ribosome with a stalled filamin domain 5 nascent chain 分子名称: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Mitropoulou, A, Plessa, E, Wlodarski, T, Ahn, M, Chan, S.H.S, Becker, T.A, Beckmann, R, Cabrita, L.D, Christodoulou, J. 登録日 2022-04-26 公開日 2022-08-10 実験手法 ELECTRON MICROSCOPY (2.2 Å) 主引用文献 Modulating co-translational protein folding by rational design and ribosome engineering. Nat Commun, 13, 2022
7ZQ6	70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain 分子名称: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Mitropoulou, A, Wlodarski, T, Ahn, M, Becker, T.A, Beckmann, R, Cabrita, L.D, Christodoulou, J. 登録日 2022-04-29 公開日 2022-08-10 実験手法 ELECTRON MICROSCOPY (2.75 Å) 主引用文献 Modulating co-translational protein folding by rational design and ribosome engineering. Nat Commun, 13, 2022
7ZOD	70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia 分子名称: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Mitropoulou, A, Plessa, E, Wlodarski, T, Ahn, M, Sidhu, H, Becker, T.A, Beckmann, R, Cabrita, L.D, Christodoulou, J. 登録日 2022-04-25 公開日 2022-08-10 実験手法 ELECTRON MICROSCOPY (2.56 Å) 主引用文献 Modulating co-translational protein folding by rational design and ribosome engineering. Nat Commun, 13, 2022
7ZQ5	70S E. coli ribosome with truncated uL23 and uL24 loops 分子名称: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Mitropoulou, A, Wlodarski, T, Ahn, M, Becker, T.A, Beckmann, R, Cabrita, L.D, Christodoulou, J. 登録日 2022-04-29 公開日 2022-08-10 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Modulating co-translational protein folding by rational design and ribosome engineering. Nat Commun, 13, 2022
8FVY	40S subunit of the Giardia lamblia 80S ribosome 分子名称: 18S rRNA, 40S ribosomal protein S21, 40S ribosomal protein S25, ... 著者 Eiler, D.R, Wimberly, B.T, Bilodeau, D.Y, Rissland, O.S, Kieft, J.S. 登録日 2023-01-20 公開日 2024-01-24 最終更新日 2024-04-17 実験手法 ELECTRON MICROSCOPY (2.94 Å) 主引用文献 The Giardia lamblia ribosome structure reveals divergence in several biological pathways and the mode of emetine function. Structure, 32, 2024
8CVM	Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map 分子名称: 23S ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Lomakin, I.B, Devarkar, S.C, Bunick, C.G. 登録日 2022-05-18 公開日 2023-03-15 最終更新日 2023-04-19 実験手法 ELECTRON MICROSCOPY (2.66 Å) 主引用文献 Sarecycline inhibits protein translation in Cutibacterium acnes 70S ribosome using a two-site mechanism. Nucleic Acids Res., 51, 2023
8G4S	40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs. 分子名称: 18S rRNA, 40S ribosomal protein S21, 40S ribosomal protein S25, ... 著者 Eiler, D.R, Wimberly, B.T, Bilodeau, D.Y, Rissland, O.S, Kieft, J.S. 登録日 2023-02-10 公開日 2024-01-31 最終更新日 2024-04-17 実験手法 ELECTRON MICROSCOPY (3.14 Å) 主引用文献 The Giardia lamblia ribosome structure reveals divergence in several biological pathways and the mode of emetine function. Structure, 32, 2024
6ZXF	Cryo-EM structure of a late human pre-40S ribosomal subunit - State G 分子名称: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Ameismeier, M, Zemp, I, van den Heuvel, J, Thoms, M, Berninghausen, O, Kutay, U, Beckmann, R. 登録日 2020-07-29 公開日 2020-12-02 最終更新日 2020-12-09 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural basis for the final steps of human 40S ribosome maturation. Nature, 587, 2020
6ZXD	Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1 分子名称: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Ameismeier, M, Zemp, I, van den Heuvel, J, Thoms, M, Berninghausen, O, Kutay, U, Beckmann, R. 登録日 2020-07-29 公開日 2020-12-02 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural basis for the final steps of human 40S ribosome maturation. Nature, 587, 2020
6ZXE	Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2 分子名称: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Ameismeier, M, Zemp, I, van den Heuvel, J, Thoms, M, Berninghausen, O, Kutay, U, Beckmann, R. 登録日 2020-07-29 公開日 2020-12-02 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural basis for the final steps of human 40S ribosome maturation. Nature, 587, 2020
6ZXH	Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2 分子名称: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Ameismeier, M, Zemp, I, van den Heuvel, J, Thoms, M, Berninghausen, O, Kutay, U, Beckmann, R. 登録日 2020-07-29 公開日 2020-12-16 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Structural basis for the final steps of human 40S ribosome maturation. Nature, 587, 2020
6ZXG	Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1 分子名称: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Ameismeier, M, Zemp, I, van den Heuvel, J, Thoms, M, Berninghausen, O, Kutay, U, Beckmann, R. 登録日 2020-07-29 公開日 2020-12-02 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.6 Å) 主引用文献 Structural basis for the final steps of human 40S ribosome maturation. Nature, 587, 2020
3RF2	Crystal Structure of 30S Ribosomal Protein S8 from Aquifex Aeolicus 分子名称: 30S ribosomal protein S8, SULFATE ION 著者 Menichelli, E, Williamson, J.R. 登録日 2011-04-05 公開日 2011-11-16 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.16 Å) 主引用文献 The Structure of Aquifex aeolicus Ribosomal Protein S8 Reveals a Unique Subdomain that Contributes to an Extremely Tight Association with 16S rRNA. J.Mol.Biol., 415, 2012
7LV0	Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Demo, G, Loveland, A.B, Svidritskiy, E, Gamper, H.B, Hou, Y.M, Korostelev, A.A. 登録日 2021-02-23 公開日 2021-07-28 最終更新日 2021-08-25 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nat Commun, 12, 2021

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