Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5NYP
DownloadVisualize
BU of 5nyp by Molmil
Anbu from Hyphomicrobium sp. strain MC1 - SG: R32
分子名称: Anbu, PHOSPHATE ION, SODIUM ION
著者Vielberg, M.-T, Groll, M.
登録日2017-05-11
公開日2017-05-24
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献On the Trails of the Proteasome Fold: Structural and Functional Analysis of the Ancestral beta-Subunit Protein Anbu.
J. Mol. Biol., 430, 2018
6PEH
DownloadVisualize
BU of 6peh by Molmil
Crystal structure of rabbit monoclonal anti-HIV antibody 1C2
分子名称: 1C2 Fab Heavy Chain, 1C2 Fab Light Chain, SULFATE ION
著者Liban, T, Pancera, M.
登録日2019-06-20
公開日2019-11-20
最終更新日2019-12-18
実験手法X-RAY DIFFRACTION (2.296 Å)
主引用文献Vaccination with Glycan-Modified HIV NFL Envelope Trimer-Liposomes Elicits Broadly Neutralizing Antibodies to Multiple Sites of Vulnerability.
Immunity, 51, 2019
5NYW
DownloadVisualize
BU of 5nyw by Molmil
Anbu (ancestral beta-subunit) from Yersinia bercovieri
分子名称: 1,2-ETHANEDIOL, AZIDE ION, CHLORIDE ION, ...
著者Piasecka, A, Czapinska, H, Vielberg, M, Szczepanowski, R.H, Reed, S, Groll, M, Bochtler, M.
登録日2017-05-12
公開日2017-05-24
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献The Y. bercovieri Anbu crystal structure sheds light on the evolution of highly (pseudo)symmetric multimers.
J. Mol. Biol., 430, 2018
4ZZI
DownloadVisualize
BU of 4zzi by Molmil
SIRT1/Activator/Inhibitor Complex
分子名称: (3S)-1,3-dimethyl-N-[3-(1,3-oxazol-5-yl)phenyl]-6-[3-(trifluoromethyl)phenyl]-2,3-dihydropyrido[2,3-b]pyrazine-4(1H)-carboxamide, 4-(4-{2-[(methylsulfonyl)amino]ethyl}piperidin-1-yl)thieno[3,2-d]pyrimidine-6-carboxamide, NAD-dependent protein deacetylase sirtuin-1, ...
著者Dai, H.
登録日2015-05-22
公開日2015-07-15
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.7346 Å)
主引用文献Crystallographic structure of a small molecule SIRT1 activator-enzyme complex.
Nat Commun, 6, 2015
5OBD
DownloadVisualize
BU of 5obd by Molmil
X-ray structure of the adduct formed upon reaction of ribonuclease A with the compound fac-[RuII(CO)3Cl2(N3-MIM), MIM=methyl-imidazole
分子名称: PHOSPHATE ION, Ribonuclease pancreatic, tris(oxidaniumylidynemethyl)-tris(oxidanyl)ruthenium
著者Pontillo, N, Ferraro, G, Merlino, A.
登録日2017-06-26
公開日2017-07-26
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Ru-Based CO releasing molecules with azole ligands: interaction with proteins and the CO release mechanism disclosed by X-ray crystallography.
Dalton Trans, 46, 2017
4UOY
DownloadVisualize
BU of 4uoy by Molmil
Crystal structure of YgjG in complex with Pyridoxal-5'-phosphate
分子名称: FORMIC ACID, GLYCEROL, PUTRESCINE AMINOTRANSFERASE, ...
著者Jeong, J.H, Kim, Y.G.
登録日2014-06-11
公開日2014-12-10
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.305 Å)
主引用文献Structure of Putrescine Aminotransferase from Escherichia Coli Provides Insights Into the Substrate Specificity Among Class III Aminotransferases.
Plos One, 9, 2014
5O11
DownloadVisualize
BU of 5o11 by Molmil
Crystal structure of PIM1 kinase in complex with small-molecule inhibitor
分子名称: 5-[(3-chlorophenyl)amino]benzo[c][2,6]naphthyridine-8-carboxylic acid, CHLORIDE ION, GLYCEROL, ...
著者Bogusz, J, Dubin, G.
登録日2017-05-17
公開日2017-11-01
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural analysis of PIM1 kinase complexes with ATP-competitive inhibitors.
Sci Rep, 7, 2017
5O19
DownloadVisualize
BU of 5o19 by Molmil
Japanese encephalitis virus non-structural protein 1 C-terminal domain
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Genome polyprotein, SULFATE ION
著者Poonsiri, T, Wright, G.S.A, Antonyuk, S.V.
登録日2017-05-18
公開日2018-01-24
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Study of the C-Terminal Domain of Nonstructural Protein 1 from Japanese Encephalitis Virus.
J. Virol., 92, 2018
5O1E
DownloadVisualize
BU of 5o1e by Molmil
p53 cancer mutant Y220C im complex with compound MB577
分子名称: 3-iodanyl-2-oxidanyl-5-prop-2-enoxy-4-pyrrol-1-yl-benzoic acid, Cellular tumor antigen p53, GLYCEROL, ...
著者Joerger, A.C, Baud, M.G.J, Bauer, M.R, Fersht, A.R.
登録日2017-05-18
公開日2018-05-09
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Aminobenzothiazole derivatives stabilize the thermolabile p53 cancer mutant Y220C and show anticancer activity in p53-Y220C cell lines.
Eur J Med Chem, 152, 2018
5O1L
DownloadVisualize
BU of 5o1l by Molmil
Structure of Latex Clearing Protein LCP in the open state with bound imidazole
分子名称: (R,R)-2,3-BUTANEDIOL, 1,2-ETHANEDIOL, IMIDAZOLE, ...
著者Ilcu, L, Roether, W, Birke, J, Brausemann, A, Einsle, O, Jendrossek, D.
登録日2017-05-18
公開日2017-08-02
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Structural and Functional Analysis of Latex Clearing Protein (Lcp) Provides Insight into the Enzymatic Cleavage of Rubber.
Sci Rep, 7, 2017
5A32
DownloadVisualize
BU of 5a32 by Molmil
Electron cryo-microscopy of Cowpea Mosaic Virus containing RNA-1 (CPMVb)
分子名称: RNA2 POLYPROTEIN
著者Hesketh, E.L, Meshcheriakova, Y, Dent, K.C, Saxena, P, Thompson, R, Cockburn, J.J, Lomonossoff, G.P, Ranson, N.A.
登録日2015-05-27
公開日2015-12-23
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (3.44 Å)
主引用文献Mechanisms of assembly and genome packaging in an RNA virus revealed by high-resolution cryo-EM.
Nat Commun, 6, 2015
3LCU
DownloadVisualize
BU of 3lcu by Molmil
Crystal Structure of Antibiotic related Methyltransferase
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, Sisomicin-gentamicin resistance methylase Sgm
著者Sivaraman, J, Husain, N.
登録日2010-01-11
公開日2010-06-02
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis for the methylation of G1405 in 16S rRNA by aminoglycoside resistance methyltransferase Sgm from an antibiotic producer: a diversity of active sites in m7G methyltransferases.
Nucleic Acids Res., 2010
5A5D
DownloadVisualize
BU of 5a5d by Molmil
A complex of the synthetic siderophore analogue Fe(III)-5-LICAM with the CeuE periplasmic protein from Campylobacter jejuni
分子名称: ENTEROCHELIN UPTAKE PERIPLASMIC BINDING PROTEIN, FE (III) ION, N,N'-pentane-1,5-diylbis(2,3-dihydroxybenzamide)
著者Blagova, E, Hughes, A, Moroz, O.V, Raines, D.J, Wilde, E.J, Turkenburg, J.P, Duhme-Klair, A.-K, Wilson, K.S.
登録日2015-06-17
公開日2016-06-29
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Interactions of the periplasmic binding protein CeuE with Fe(III) n-LICAM(4-) siderophore analogues of varied linker length.
Sci Rep, 7, 2017
2BHU
DownloadVisualize
BU of 2bhu by Molmil
Crystal structure of Deinococcus radiodurans maltooligosyltrehalose trehalohydrolase
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, MALTOOLIGOSYLTREHALOSE TREHALOHYDROLASE, ...
著者Timmins, J, Leiros, H.-K.S, Leonard, G, Leiros, I, McSweeney, S.
登録日2005-01-18
公開日2005-03-31
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Crystal Structure of Maltooligosyltrehalose Trehalohydrolase from Deinococcus Radiodurans in Complex with Disaccharides
J.Mol.Biol., 347, 2005
2BIA
DownloadVisualize
BU of 2bia by Molmil
Radiation damage of the Schiff base in phosphoserine aminotransferase (structure G)
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ...
著者Dubnovitsky, A.P, Ravelli, R.B.G, Popov, A.N, Papageorgiou, A.C.
登録日2005-01-20
公開日2005-05-19
最終更新日2019-05-22
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Strain Relief at the Active Site of Phosphoserine Aminotransferase Induced by Radiation Damage.
Protein Sci., 14, 2005
5A5Q
DownloadVisualize
BU of 5a5q by Molmil
Crystal structure of human ATAD2 bromodomain in complex with 3-methyl- 8-piperidin-4-ylamino-1,2-dihydro-1,7-naphthyridin-2-one hydrochloride
分子名称: 1,2-ETHANEDIOL, 3-methyl-8-[(piperidin-4-yl)amino]-1,2-dihydro-1,7-naphthyridin-2-one, ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 2, ...
著者Chung, C, Bamborough, P, Demont, E.
登録日2015-06-20
公開日2015-07-22
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Fragment-Based Discovery of Low-Micromolar Atad2 Bromodomain Inhibitors.
J.Med.Chem., 58, 2015
5OCI
DownloadVisualize
BU of 5oci by Molmil
Human Heat Shock Protein 90 bound to 6-Hydroxy-3-(3-methyl-benzyl)-1H-indazole-5-carboxylic acid methyl-(4-morpholin-4-yl-phenyl)-amide
分子名称: 6-Hydroxy-3-(3-methyl-benzyl)-1H-indazole-5-carboxylic acid methyl-(4-morpholin-4-yl-phenyl)-amide, Heat shock protein HSP 90-alpha
著者Schuetz, D.A, Richter, L, Amaral, M, Grandits, M, Musil, D, Graedler, U, Frech, M, Ecker, G.F.
登録日2017-07-03
公開日2018-05-23
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Ligand Desolvation Steers On-Rate and Impacts Drug Residence Time of Heat Shock Protein 90 (Hsp90) Inhibitors.
J. Med. Chem., 61, 2018
5OL1
DownloadVisualize
BU of 5ol1 by Molmil
Crystal structure of an inactivated Ssp SICLOPPS intein with a CAFHPQ extein
分子名称: 1,2-ETHANEDIOL, BETA-MERCAPTOETHANOL, DNA polymerase III subunit alpha,DNA polymerase III subunit alpha, ...
著者Kick, L.M, Schneider, S.
登録日2017-07-26
公開日2017-09-27
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.751 Å)
主引用文献Mechanistic Insights into Cyclic Peptide Generation by DnaE Split-Inteins through Quantitative and Structural Investigation.
Chembiochem, 18, 2017
5A9X
DownloadVisualize
BU of 5a9x by Molmil
Structure of GDP bound BipA
分子名称: GTP-BINDING PROTEIN, GUANOSINE-5'-DIPHOSPHATE
著者Kumar, V, Chen, Y, Ero, R, Li, Z, Gao, Y.-G.
登録日2015-07-23
公開日2015-08-26
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.8 Å)
主引用文献Structure of Bipa in GTP Form Bound to the Ratcheted Ribosome.
Proc.Natl.Acad.Sci.USA, 112, 2015
5OL9
DownloadVisualize
BU of 5ol9 by Molmil
Structure of human mitochondrial transcription elongation factor (TEFM) N-terminal domain
分子名称: ACETATE ION, Transcription elongation factor, mitochondrial
著者Hillen, H.S, Parshin, A.V, Agaronyan, K, Morozov, Y, Graber, J.J, Chernev, A, Schwinghammer, K, Urlaub, H, Anikin, M, Cramer, P, Temiakov, D.
登録日2017-07-27
公開日2017-10-18
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.302 Å)
主引用文献Mechanism of Transcription Anti-termination in Human Mitochondria.
Cell, 171, 2017
5OCO
DownloadVisualize
BU of 5oco by Molmil
Discovery of small molecules binding to KRAS via high affinity antibody fragment competition method.
分子名称: CITRIC ACID, DI(HYDROXYETHYL)ETHER, GTPase KRas, ...
著者Cruz-Migoni, A, Ehebauer, M.T, Phillips, S.E.V, Quevedo, C.E, Rabbitts, T.H.
登録日2017-07-03
公開日2018-08-22
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Small molecule inhibitors of RAS-effector protein interactions derived using an intracellular antibody fragment.
Nat Commun, 9, 2018
4ZRR
DownloadVisualize
BU of 4zrr by Molmil
Crystal Structure of Monomeric Bacteriophytochrome mutant D207L Y263F at 1.5 A resolution Using a home source.
分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, 3-[2-[(Z)-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E,4R)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, Bacteriophytochrome, ...
著者Bhattacharya, S, Satyshur, K.A, Lehtivuori, H, Forest, K.T.
登録日2015-05-12
公開日2016-01-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Removal of Chromophore-Proximal Polar Atoms Decreases Water Content and Increases Fluorescence in a Near Infrared Phytofluor.
Front Mol Biosci, 2, 2015
4U9H
DownloadVisualize
BU of 4u9h by Molmil
Ultra High Resolution Structure Of The Ni-R State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE3-S4 CLUSTER, ...
著者Ogata, H, Nishikawa, K, Lubitz, W.
登録日2014-08-06
公開日2015-01-21
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (0.89 Å)
主引用文献Hydrogens detected by subatomic resolution protein crystallography in a [NiFe] hydrogenase.
Nature, 520, 2015
5OLC
DownloadVisualize
BU of 5olc by Molmil
Crystal structure of the 3,6-anhydro-D-galactonate cycloisomerase from Zobellia galactanivorans
分子名称: Galactonate dehydratase, MAGNESIUM ION
著者Michel, G, Czjzek, M, Jam, M.
登録日2017-07-27
公開日2017-12-06
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria.
Nat Commun, 8, 2017
5WQ9
DownloadVisualize
BU of 5wq9 by Molmil
CryoEM structure of type II secretion system secretin GspD G453A mutant in Vibrio cholerae
分子名称: Type II secretion system protein D
著者Yan, Z, Yin, M, Li, X.
登録日2016-11-23
公開日2016-12-28
最終更新日2017-02-22
実験手法ELECTRON MICROSCOPY (4.22 Å)
主引用文献Structural insights into the secretin translocation channel in the type II secretion system
Nat. Struct. Mol. Biol., 24, 2017

225399

件を2024-09-25に公開中

PDB statisticsPDBj update infoContact PDBjnumon