PDB: 7386 件ウェブページステータス検索Chemie searchBIRD

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5LZF	Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Fischer, N, Neumann, P, Bock, L.V, Maracci, C, Wang, Z, Paleskava, A, Konevega, A.L, Schroeder, G.F, Grubmueller, H, Ficner, R, Rodnina, M.V, Stark, H. 登録日 2016-09-29 公開日 2016-11-23 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 The pathway to GTPase activation of elongation factor SelB on the ribosome. Nature, 540, 2016
7QWQ	Ternary complex of ribosome nascent chain with SRP and NAC 分子名称: 28S rRNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Jomaa, A, Gamerdinger, M, Hsieh, H, Wallisch, A, Chandrasekaran, V, Ulusoy, Z, Scaiola, A, Hegde, R, Shan, S, Ban, N, Deuerling, E. 登録日 2022-01-25 公開日 2022-03-16 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (2.83 Å) 主引用文献 Mechanism of signal sequence handover from NAC to SRP on ribosomes during ER-protein targeting. Science, 375, 2022
5M1J	Nonstop ribosomal complex bound with Dom34 and Hbs1 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Hilal, T, Yamamoto, H, Loerke, J, Buerger, J, Mielke, T, Spahn, C.M.T. 登録日 2016-10-07 公開日 2017-01-18 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structural insights into ribosomal rescue by Dom34 and Hbs1 at near-atomic resolution. Nat Commun, 7, 2016
7A5G	Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA 分子名称: 12S rRNA, 16S rRNA, 28S ribosomal protein S10, ... 著者 Desai, N, Yang, H, Chandrasekaran, V, Kazi, R, Minczuk, M, Ramakrishnan, V. 登録日 2020-08-21 公開日 2020-12-23 実験手法 ELECTRON MICROSCOPY (4.33 Å) 主引用文献 Elongational stalling activates mitoribosome-associated quality control. Science, 370, 2020
7A5K	Structure of the human mitoribosome in the post translocation state bound to mtEF-G1 分子名称: 12S rRNA, 16S rRNA, 28S ribosomal protein S10, ... 著者 Desai, N, Yang, H, Chandrasekaran, V, Kazi, R, Minczuk, M, Ramakrishnan, V. 登録日 2020-08-21 公開日 2020-12-23 最終更新日 2022-12-07 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Elongational stalling activates mitoribosome-associated quality control. Science, 370, 2020
7A5F	Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs 分子名称: 12S rRNA, 16S rRNA, 28S ribosomal protein S10, ... 著者 Desai, N, Yang, H, Chandrasekaran, V, Kazi, R, Minczuk, M, Ramakrishnan, V. 登録日 2020-08-21 公開日 2020-12-23 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Elongational stalling activates mitoribosome-associated quality control. Science, 370, 2020
6ZQF	Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala) 分子名称: 18S rRNA, 40S ribosomal protein S1-A, 40S ribosomal protein S11-A, ... 著者 Cheng, J, Lau, B, Venuta, G.L, Berninghausen, O, Hurt, E, Beckmann, R. 登録日 2020-07-09 公開日 2020-09-23 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (4.9 Å) 主引用文献 90 S pre-ribosome transformation into the primordial 40 S subunit. Science, 369, 2020
6FXC	The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Matzov, D, Aibara, S, Zimmerman, E, Bashan, A, Kidmose, R, Amunts, A, Yonath, A. 登録日 2018-03-08 公開日 2018-03-21 最終更新日 2018-11-21 実験手法 ELECTRON MICROSCOPY (6.76 Å) 主引用文献 The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus. Nat Commun, 8, 2017
8OJ5	60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution) 分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Penchev, I, DaRosa, P.A, Peter, J.J, Kulathu, Y, Becker, T, Beckmann, R, Kopito, R. 登録日 2023-03-23 公開日 2024-02-21 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 UFM1 E3 ligase promotes recycling of 60S ribosomal subunits from the ER. Nature, 627, 2024
5IT7	Structure of the Kluyveromyces lactis 80S ribosome in complex with the cricket paralysis virus IRES and eEF2 分子名称: (2S)-1-amino-N,N,N-trimethyl-1-oxobutan-2-aminium, 18S ribosomal RNA, 25S ribosomal RNA, ... 著者 Murray, J, Savva, C.G, Shin, B.S, Dever, T.E, Ramakrishnan, V, Fernandez, I.S. 登録日 2016-03-16 公開日 2016-05-18 最終更新日 2018-11-21 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structural characterization of ribosome recruitment and translocation by type IV IRES. Elife, 5, 2016
5T62	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex 分子名称: 25S Ribosomal RNA, 5.8S Ribosomal RNA, 5S Ribosomal RNA, ... 著者 Malyutin, A.G, Musalgaonkar, S, Patchett, S, Frank, J, Johnson, A.W. 登録日 2016-09-01 公開日 2017-02-08 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis. EMBO J., 36, 2017
2Z53	Crystal structure of the S211A mutant of the ribosome inactivating protein PDL4 from P. dioica leaves 分子名称: 1,2-ETHANEDIOL, Ribosome-inactivating protein PD-L4 著者 Berisio, R, Ruggiero, A. 登録日 2007-06-27 公開日 2008-02-26 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.29 Å) 主引用文献 Atomic resolution (1.1 A) structure of the ribosome-inactivating protein PD-L4 from Phytolacca dioica L. leaves Proteins, 71, 2008
3IY8	Leishmania tarentolae Mitonchondrial Ribosome small subunit 分子名称: 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S15, ... 著者 Sharma, M.R, Booth, T.M, Simpson, L, Maslov, D.A, Agrawal, R.K. 登録日 2009-04-16 公開日 2009-07-07 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (14.1 Å) 主引用文献 Structure of a mitochondrial ribosome with minimal RNA Proc.Natl.Acad.Sci.USA, 106, 2009
5LZA	Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Fischer, N, Neumann, P, Bock, L.V, Maracci, C, Wang, Z, Paleskava, A, Konevega, A.L, Schroeder, G.F, Grubmueller, H, Ficner, R, Rodnina, M.V, Stark, H. 登録日 2016-09-29 公開日 2016-11-23 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 The pathway to GTPase activation of elongation factor SelB on the ribosome. Nature, 540, 2016
5LZD	Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Fischer, N, Neumann, P, Bock, L.V, Maracci, C, Wang, Z, Paleskava, A, Konevega, A.L, Schroeder, G.F, Grubmueller, H, Ficner, R, Rodnina, M.V, Stark, H. 登録日 2016-09-29 公開日 2016-11-23 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 The pathway to GTPase activation of elongation factor SelB on the ribosome. Nature, 540, 2016
6YSR	Structure of the P+9 stalled ribosome complex 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Chan, K.-H, Petrychenko, V, Mueller, C, Maracci, C, Holtkamp, W, Wilson, D.N, Fischer, N, Rodnina, M.V. 登録日 2020-04-23 公開日 2020-08-19 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Mechanism of ribosome rescue by alternative ribosome-rescue factor B. Nat Commun, 11, 2020
4YHH	Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline 分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Schedlbauer, A, Kaminishi, T, Ochoa-Lizarralde, B, Dhimole, N, Zhou, S, Lopez-Alonso, J.P, Connell, S.R, Fucini, P. 登録日 2015-02-27 公開日 2015-04-08 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.417 Å) 主引用文献 Structural characterization of an alternative mode of tigecycline binding to the bacterial ribosome. Antimicrob.Agents Chemother., 59, 2015
5LZB	Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Fischer, N, Neumann, P, Bock, L.V, Maracci, C, Wang, Z, Paleskava, A, Konevega, A.L, Schroeder, G.F, Grubmueller, H, Ficner, R, Rodnina, M.V, Stark, H. 登録日 2016-09-29 公開日 2016-11-23 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (5.3 Å) 主引用文献 The pathway to GTPase activation of elongation factor SelB on the ribosome. Nature, 540, 2016
5LZE	Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Fischer, N, Neumann, P, Bock, L.V, Maracci, C, Wang, Z, Paleskava, A, Konevega, A.L, Schroeder, G.F, Grubmueller, H, Ficner, R, Rodnina, M.V, Stark, H. 登録日 2016-09-29 公開日 2016-11-23 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 The pathway to GTPase activation of elongation factor SelB on the ribosome. Nature, 540, 2016
7A5I	Structure of the human mitoribosome with A- P-and E-site mt-tRNAs 分子名称: 12S rRNA, 16S rRNA, 28S ribosomal protein S10, ... 著者 Desai, N, Yang, H, Chandrasekaran, V, Kazi, R, Minczuk, M, Ramakrishnan, V. 登録日 2020-08-21 公開日 2020-12-23 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Elongational stalling activates mitoribosome-associated quality control. Science, 370, 2020
3J5S	EttA binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S7, ... 著者 Hashem, Y. 登録日 2013-11-15 公開日 2014-01-08 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (7.5 Å) 主引用文献 EttA regulates translation by binding the ribosomal E site and restricting ribosome-tRNA dynamics. Nat.Struct.Mol.Biol., 21, 2014
5NDK	Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. 登録日 2017-03-08 公開日 2017-12-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NDJ	Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. 登録日 2017-03-08 公開日 2018-05-02 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6ZQG	Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C 分子名称: 18S rRNA, 40S ribosomal protein S1-A, 40S ribosomal protein S11-A, ... 著者 Cheng, J, Lau, B, Venuta, G.L, Berninghausen, O, Hurt, E, Beckmann, R. 登録日 2020-07-09 公開日 2020-09-23 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 90 S pre-ribosome transformation into the primordial 40 S subunit. Science, 369, 2020
6XHX	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ... 著者 Svetlov, M.S, Syroegin, E.A, Aleksandrova, E.V, Atkinson, G.C, Gregory, S.T, Mankin, A.S, Polikanov, Y.S. 登録日 2020-06-19 公開日 2020-12-23 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Structure of Erm-modified 70S ribosome reveals the mechanism of macrolide resistance. Nat.Chem.Biol., 17, 2021

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