PDB: 225399 件ウェブページステータス検索Chemie searchBIRD

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7KI6	Structure of the HeV F glycoprotein in complex with the 1F5 neutralizing antibody 分子名称: 1F5 Fab light chain, 1F5 heavy chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Dang, H.V, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D. 登録日 2020-10-23 公開日 2021-05-05 最終更新日 2021-06-23 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Broadly neutralizing antibody cocktails targeting Nipah virus and Hendra virus fusion glycoproteins. Nat.Struct.Mol.Biol., 28, 2021
6S4O	The crystal structure of glycogen phosphorylase in complex with 9 分子名称: (2~{R},3~{S},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-6-(2-naphthalen-2-yl-1~{H}-imidazol-4-yl)oxane-3,4,5-triol, Glycogen phosphorylase, muscle form, ... 著者 Kyriakis, E, Solovou, T.G.A, Papaioannou, O.S.E, Skamnaki, V.T, Leonidas, D.D. 登録日 2019-06-28 公開日 2020-02-19 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 The architecture of hydrogen and sulfur sigma-hole interactions explain differences in the inhibitory potency of C-beta-d-glucopyranosyl thiazoles, imidazoles and an N-beta-d glucopyranosyl tetrazole for human liver glycogen phosphorylase and offer new insights to structure-based design. Bioorg.Med.Chem., 28, 2020
8T0B	Novel Domain of Unknown Function Solved with AlphaFold 分子名称: DUF1842 domain-containing protein 著者 Miller, J.E, Cascio, D, Sawaya, M.R, Yeates, T.O. 登録日 2023-05-31 公開日 2024-01-17 最終更新日 2024-04-10 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 AlphaFold-assisted structure determination of a bacterial protein of unknown function using X-ray and electron crystallography. Acta Crystallogr D Struct Biol, 80, 2024
7N8I	SARS-CoV-2 S (B.1.429 / epsilon variant) + S2M11 + S2L20 (Local Refinement of the NTD/S2L20) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, S2L20 Fab Heavy Chain Variable Region, S2L20 Fab Light Chain Variable Region, ... 著者 McCallum, M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D. 登録日 2021-06-14 公開日 2021-07-14 最終更新日 2021-08-18 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 SARS-CoV-2 immune evasion by the B.1.427/B.1.429 variant of concern. Science, 373, 2021
6RVD	Revised cryo-EM structure of the human 2:1 Ptch1-Shh complex 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... 著者 El Omari, K, Rudolf, A.F, Kowatsch, C, Malinauskas, T, Kinnebrew, M, Ansell, T.B, Bishop, B, Pardon, E, Schwab, R.A, Qian, M, Duman, R, Covey, D.F, Steyaert, J, Wagner, A, Sansom, M.S.P, Rohatgi, R, Siebold, C. 登録日 2019-05-31 公開日 2019-10-02 最終更新日 2020-07-29 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 The morphogen Sonic hedgehog inhibits its receptor Patched by a pincer grasp mechanism. Nat.Chem.Biol., 15, 2019
7D2Z	Structure of sybody SR31 in complex with the SARS-CoV-2 S Receptor Binding domain (RBD) 分子名称: ACETATE ION, FORMIC ACID, GLYCEROL, ... 著者 Li, T, Cai, H, Yao, H, Qin, W, Li, D. 登録日 2020-09-17 公開日 2021-02-17 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.97 Å) 主引用文献 A high-affinity RBD-targeting nanobody improves fusion partner's potency against SARS-CoV-2. Plos Pathog., 17, 2021
7N62	SARS-CoV-2 Spike (2P) in complex with C12C9 Fab (NTD local reconstruction) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, C12C9 Fab heavy chain, C12C9 Fab light chain, ... 著者 Windsor, I.W, Jenni, S, Bajic, G, Tong, P, Gautam, A.K, Wesemann, D.R, Harrison, S.C. 登録日 2021-06-07 公開日 2021-08-04 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Memory B cell repertoire for recognition of evolving SARS-CoV-2 spike. Biorxiv, 2021
7D30	Structure of sybody MR17-SR31 fusion in complex with the SARS-CoV-2 S Receptor Binding domain (RBD) 分子名称: 1,3-BUTANEDIOL, ACETATE ION, CADMIUM ION, ... 著者 Li, T, Yao, H, Cai, H, Qin, W, Li, D. 登録日 2020-09-17 公開日 2021-02-17 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 A high-affinity RBD-targeting nanobody improves fusion partner's potency against SARS-CoV-2. Plos Pathog., 17, 2021
6S4R	The crystal structure of glycogen phosphorylase in complex with 11 分子名称: (2~{R},3~{S},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-6-(2-naphthalen-2-yl-1,3-thiazol-4-yl)oxane-3,4,5-triol, Glycogen phosphorylase, muscle form, ... 著者 Kyriakis, E, Papaioannou, O.S.E, Solovou, T.G.A, Skamnaki, V.T, Leonidas, D.D. 登録日 2019-06-28 公開日 2020-02-19 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The architecture of hydrogen and sulfur sigma-hole interactions explain differences in the inhibitory potency of C-beta-d-glucopyranosyl thiazoles, imidazoles and an N-beta-d glucopyranosyl tetrazole for human liver glycogen phosphorylase and offer new insights to structure-based design. Bioorg.Med.Chem., 28, 2020
4XMP	Crystal structure of broadly and potently neutralizing antibody VRC08 in complex with HIV-1 clade A strain Q842.d12 gp120 分子名称: (R,R)-2,3-BUTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160,Envelope glycoprotein gp160,Envelope glycoprotein gp160, ... 著者 Zhou, T, Srivatsan, S, Kwong, P.D. 登録日 2015-01-15 公開日 2015-04-29 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.7831 Å) 主引用文献 Maturation and Diversity of the VRC01-Antibody Lineage over 15 Years of Chronic HIV-1 Infection. Cell, 161, 2015
8FDQ	An AT-specific DNA 5-CGCAAATTTCGC-3' with benzimidazole (DB1476) complex 分子名称: 4,4'-(1H-benzimidazole-2,6-diyl)di(benzene-1-carboximidamide), DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3'), MAGNESIUM ION 著者 Ogboona, E.N, Wilson, W.D. 登録日 2022-12-04 公開日 2023-02-22 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences. Acs Bio Med Chem Au, 3, 2023
5W1K	JUNV GP1 CR1-10 Fab CR1-28 Fab complex 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CR1-10 Fab heavy chain, ... 著者 Raymond, D.D, Clark, L.E, Abraham, J. 登録日 2017-06-03 公開日 2018-05-30 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.99 Å) 主引用文献 Vaccine-elicited receptor-binding site antibodies neutralize two New World hemorrhagic fever arenaviruses. Nat Commun, 9, 2018
4XCK	Vibrio cholerae O395 Ribokinase complexed with ADP, Ribose and Cesium ion. 分子名称: ADENOSINE-5'-DIPHOSPHATE, CESIUM ION, Ribokinase, ... 著者 Paul, R, Patra, M.D, Sen, U. 登録日 2014-12-18 公開日 2015-01-21 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.37 Å) 主引用文献 Crystal Structure of Apo and Ligand Bound Vibrio cholerae Ribokinase (Vc-RK): Role of Monovalent Cation Induced Activation and Structural Flexibility in Sugar Phosphorylation. Adv. Exp. Med. Biol., 842, 2015
4QTF	Structure and specificity of L-D-Transpeptidase from Mycobacterium tuberculosis and antibiotic resistance: Calcium binding promotes dimer formation 分子名称: (3S,5S)-3-({[(aminomethyl)amino]methyl}sulfanyl)-5-[(2S)-1,3-dioxobutan-2-yl]-L-proline, GLCNAC(BETA1-4)-MURNAC(1,6-ANHYDRO)-L-ALA-GAMMA-D-GLU-MESO-A2PM-D-ALA, L,d-transpeptidase LdtB 著者 Gokulan, K, Varughese, K.I. 登録日 2014-07-07 公開日 2015-07-29 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure and specificity of L-D-Transpeptidase from Mycobacterium tuberculosis and antibiotic resistance: Calcium binding promotes dimer formation To be Published
4ZLT	Crystal structure of viral chemokine binding protein R17 in complex with CCL3 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, C-C motif chemokine 3, Putative uncharacterized protein 著者 Lubman, O.Y, Fremont, D.H. 登録日 2015-05-01 公開日 2015-11-18 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Parallel Evolution of Chemokine Binding by Structurally Related Herpesvirus Decoy Receptors. Structure, 24, 2016
7ZF6	Omi-12 Fab 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CITRIC ACID, GLYCEROL, ... 著者 Zhou, D, Huo, J, Ren, J, Stuart, D.I. 登録日 2022-04-01 公開日 2022-06-01 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.21 Å) 主引用文献 Potent cross-reactive antibodies following Omicron breakthrough in vaccinees. Cell, 185, 2022
7ZF9	SARS-CoV-2 Omicron BA.2 RBD in complex with COVOX-150 Fab (P21) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, COVOX-150 heavy chain, COVOX-150 light chain, ... 著者 Zhou, D, Huo, J, Ren, J, Stuart, D.I. 登録日 2022-04-01 公開日 2022-06-01 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Potent cross-reactive antibodies following Omicron breakthrough in vaccinees. Cell, 185, 2022
7ZRC	OMI-38 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Omi-38 Fab Heavy Chain, ... 著者 Duyvesteyn, H.M.E, Ren, J, Stuart, D.I. 登録日 2022-05-04 公開日 2022-06-01 最終更新日 2022-06-22 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Potent cross-reactive antibodies following Omicron breakthrough in vaccinees. Cell, 185, 2022
7ZR9	OMI-2 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE GLYCOPROTEIN 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Omi-2 Fab heavy chain, ... 著者 Duyvesteyn, H.M.E, Ren, J, Stuart, D.I. 登録日 2022-05-03 公開日 2022-06-01 最終更新日 2022-06-22 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Potent cross-reactive antibodies following Omicron breakthrough in vaccinees. Cell, 185, 2022
7ZFC	SARS-CoV-2 Beta RBD in complex with nanobody C1, Omi-18 and Omi-31 Fabs 分子名称: Nanobody C1, Omi-18 heavy chain, Omi-18 light chain, ... 著者 Zhou, D, Huo, J, Ren, J, Stuart, D.I. 登録日 2022-04-01 公開日 2022-06-01 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.24 Å) 主引用文献 Potent cross-reactive antibodies following Omicron breakthrough in vaccinees. Cell, 185, 2022
7ZFB	SARS-CoV-2 Omicron RBD in complex with nanobody C1, Omi-18 and Omi-31 Fabs 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Nanobody C1, Omi-18 heavy chain, ... 著者 Zhou, D, Huo, J, Ren, J, Stuart, D.I. 登録日 2022-04-01 公開日 2022-06-01 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.08 Å) 主引用文献 Potent cross-reactive antibodies following Omicron breakthrough in vaccinees. Cell, 185, 2022
7ZR7	OMI-42 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE GLYCOPROTEIN 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Omi-42 heavy chain, ... 著者 Duyvesteyn, H.M.E, Ren, J, Stuart, D.I. 登録日 2022-05-03 公開日 2022-06-01 最終更新日 2023-11-22 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Potent cross-reactive antibodies following Omicron breakthrough in vaccinees. Cell, 185, 2022
7ZF7	SARS-CoV-2 Omicron BA.2 RBD in complex with ACE2 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, Spike protein S1, ... 著者 Zhou, D, Huo, J, Ren, J, Stuart, D.I. 登録日 2022-04-01 公開日 2022-06-01 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.46 Å) 主引用文献 Potent cross-reactive antibodies following Omicron breakthrough in vaccinees. Cell, 185, 2022
7ZR8	OMI-38 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE RBD (local refinement) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Omi-38 Fab light chain, Omi-38 fab heavy chain, ... 著者 Duyvesteyn, H.M.E, Ren, J, Stuart, D.I. 登録日 2022-05-03 公開日 2022-06-01 最終更新日 2022-06-22 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Potent cross-reactive antibodies following Omicron breakthrough in vaccinees. Cell, 185, 2022
4ZA8	Crystal structure of A niger Fdc1 in complex with penta-fluorocinnamic acid 分子名称: 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol, 1-deoxy-5-O-phosphono-1-[(10aR)-2,2,3,4-tetramethyl-8,10-dioxo-1,2,8,9,10,10a-hexahydro-6H-indeno[1,7-ef]pyrimido[4,5-b][1,4]diazepin-6-yl]-D-ribitol, MANGANESE (II) ION, ... 著者 Payne, K.A.P, Leys, D. 登録日 2015-04-13 公開日 2015-06-17 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.06 Å) 主引用文献 New cofactor supports alpha , beta-unsaturated acid decarboxylation via 1,3-dipolar cycloaddition. Nature, 522, 2015

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