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9B5Z
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BU of 9b5z by Molmil
GluA2 flip Q in complex with TARPgamma2 at pH8, consensus structure of LBD-TMD-TARPgamma2
Descriptor: Isoform Flip of Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit
Authors:Nakagawa, T, Greger, I.H.
Deposit date:2024-03-23
Release date:2024-07-31
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (2.71 Å)
Cite:Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization.
Nat.Struct.Mol.Biol., 2024
8ZYO
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BU of 8zyo by Molmil
Cryo-EM Structure of astemizole-bound hERG Channel
Descriptor: 1-[(4-fluorophenyl)methyl]-N-{1-[2-(4-methoxyphenyl)ethyl]piperidin-4-yl}-1H-benzimidazol-2-amine, Potassium voltage-gated channel subfamily H member 2
Authors:Miyashita, Y, Moriya, T, Kato, T, Kawasaki, M, Yasuda, Y, Adachi, N, Suzuki, K, Ogasawara, S, Saito, T, Senda, T, Murata, T.
Deposit date:2024-06-18
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (3.29 Å)
Cite:Improved higher resolution Cryo-EM structures reveal the binding modes of hERG Channel Inhibitors
To Be Published
8Z9C
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BU of 8z9c by Molmil
Cryo-EM structure of NTR-bound type VII CRISPR-Cas complex at substrate-engaged state I
Descriptor: Protein structure, RNA (41-MER), RNA (48-MER), ...
Authors:Zhang, H, Deng, Z, Li, X.
Deposit date:2024-04-23
Release date:2024-08-21
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:Structural basis for the activity of the type VII CRISPR-Cas system.
Nature, 633, 2024
9EYX
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BU of 9eyx by Molmil
Human PRMT5 in complex with AZ compound 28
Descriptor: (3~{S})-2-[(5-azanyl-6-fluoranyl-1~{H}-pyrrolo[3,2-b]pyridin-2-yl)methyl]-6-fluoranyl-1'-[(4-fluorophenyl)methyl]spiro[isoindole-3,3'-pyrrolidine]-1,2'-dione, 5'-DEOXY-5'-METHYLTHIOADENOSINE, Methylosome protein WDR77, ...
Authors:Debreczeni, J.
Deposit date:2024-04-09
Release date:2024-08-14
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Discovery and In Vivo Efficacy of AZ-PRMT5i-1, a Novel PRMT5 Inhibitor with High MTA Cooperativity.
J.Med.Chem., 67, 2024
9ICV
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BU of 9icv by Molmil
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*GP*A)-3'), ...
Authors:Pelletier, H, Sawaya, M.R.
Deposit date:1995-12-16
Release date:1996-11-15
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta
Biochemistry, 35, 1996
8Z5G
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BU of 8z5g by Molmil
Cryo-EM structure of E.coli SPFH-NfeD family protein complex QmcA-YbbJ
Descriptor: Inner membrane protein YbbJ, Protein QmcA
Authors:Qiao, Z, Gao, Y.G.
Deposit date:2024-04-18
Release date:2024-08-21
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Cryo-EM structure of the SPFH-NfeD family protein complex QmcA-YbbJ.
Structure, 2024
9CI8
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BU of 9ci8 by Molmil
T cell receptor complex
Descriptor: T cell receptor delta constant, T cell receptor gamma constant 1, T-cell surface glycoprotein CD3 delta chain, ...
Authors:Gully, B.S, Rossjohn, J.
Deposit date:2024-07-02
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:T cell receptor complex
To Be Published
9F8X
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BU of 9f8x by Molmil
Low-dose structure of Marinobacter nauticus nitrous oxide reductase
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Einsle, O, Pomowski, A.
Deposit date:2024-05-07
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.498 Å)
Cite:Revisiting the metal sites of nitrous oxide reductase in a low-dose structure from Marinobacter nauticus.
J.Biol.Inorg.Chem., 29, 2024
9EU7
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BU of 9eu7 by Molmil
The FK1 domain of FKBP51 in complex with SAFit-analog 15b
Descriptor: (2-methyl-1,3-thiazol-5-yl)methyl (2S)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Buffa, V, Hausch, F.
Deposit date:2024-03-27
Release date:2024-06-12
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:1,4-Pyrazolyl-Containing SAFit-Analogues are Selective FKBP51 Inhibitors With Improved Ligand Efficiency and Drug-Like Profile.
Chemmedchem, 19, 2024
9CV9
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BU of 9cv9 by Molmil
Bufavirus 1 at pH 4.0
Descriptor: VP1
Authors:Gulkis, M.C, McKenna, R, Bennett, A.D.
Deposit date:2024-07-28
Release date:2024-08-28
Last modified:2024-09-18
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural Characterization of Human Bufavirus 1: Receptor Binding and Endosomal pH-Induced Changes.
Viruses, 16, 2024
9BUN
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BU of 9bun by Molmil
RhoBAST aptamer RNA in complex with 5(6)-carboxytetramethylrhodamine
Descriptor: 5-carboxy methylrhodamine, IRIDIUM HEXAMMINE ION, RNA (48-MER)
Authors:Batey, R.T, Siwik, S.H.
Deposit date:2024-05-17
Release date:2024-06-05
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of RhoBAST RNA aptamer in complex with 5(6)-carboxytetramethylrhodamine (TAMRA)
To Be Published
9B12
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BU of 9b12 by Molmil
Structure of Optineurin bound to HOIP NZF1 domain and M1-linked diubiquitin, crystal form 1
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, E3 ubiquitin-protein ligase RNF31, ...
Authors:Michel, M.A, Scutts, S, Komander, D.
Deposit date:2024-03-12
Release date:2024-07-31
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Linkage and substrate specificity conferred by NZF ubiquitin binding domains
To Be Published
8Z7N
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BU of 8z7n by Molmil
Structure of HIV-1 CH119 SOSIP.664 trimer in complex with CD4 molecules
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, T-cell surface glycoprotein CD4
Authors:Li, D, Wang, T.
Deposit date:2024-04-20
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Intermediate open state of CD4-bound HIV-1 env heterotrimers in asia CRFs
Biochem Biophys Res Commun, 725, 2024
9B63
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BU of 9b63 by Molmil
GluA2 flip Q in complex with TARPgamma2 at pH5, consensus structure of TMD-TARPgamma2
Descriptor: Isoform Flip of Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit
Authors:Nakagawa, T, Greger, I.H.
Deposit date:2024-03-23
Release date:2024-07-31
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization.
Nat.Struct.Mol.Biol., 2024
9CC9
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BU of 9cc9 by Molmil
Dodecameric state of the NRC4 resistosome
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, NLR-required for cell death 4
Authors:Liu, F, Yang, Z, Nogales, E, Staskawicz, B.J.
Deposit date:2024-06-21
Release date:2024-09-11
Last modified:2024-09-18
Method:ELECTRON MICROSCOPY (3.54 Å)
Cite:Activation of the helper NRC4 immune receptor forms a hexameric resistosome.
Cell, 187, 2024
9C55
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BU of 9c55 by Molmil
Crystal structure of human PTPN2 in complex with active site inhibitor
Descriptor: 5-(3-{[1-(BENZYLSULFONYL)PIPERIDIN-4-YL]AMINO}PHENYL)-4-BROMO-3-(CARBOXYMETHOXY)THIOPHENE-2-CARBOXYLIC ACID, Tyrosine-protein phosphatase non-receptor type 2
Authors:Bester, S.M, Linwood, R, Wu, W.-I, Mou, T.-C.
Deposit date:2024-06-05
Release date:2024-09-04
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Enhancing the apo protein tyrosine phosphatase non-receptor type 2 crystal soaking strategy through inhibitor-accessible binding sites.
Acta Crystallogr.,Sect.F, 80, 2024
9BH6
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BU of 9bh6 by Molmil
Human DNA polymerase theta helicase domain tetramer in the apo form
Descriptor: DNA polymerase theta
Authors:Zerio, C.J, Lander, G.C.
Deposit date:2024-04-19
Release date:2024-05-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Human polymerase theta helicase positions DNA microhomologies for double-strand break repair
To Be Published
9C9M
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BU of 9c9m by Molmil
HIV-1 intasome core bound with DTG
Descriptor: (4R,12aS)-N-(2,4-difluorobenzyl)-7-hydroxy-4-methyl-6,8-dioxo-3,4,6,8,12,12a-hexahydro-2H-pyrido[1',2':4,5]pyrazino[2,1-b][1,3]oxazine-9-carboxamide, Integrase, MAGNESIUM ION, ...
Authors:Li, M, Craigie, R.
Deposit date:2024-06-14
Release date:2024-07-31
Last modified:2024-08-07
Method:ELECTRON MICROSCOPY (2.01 Å)
Cite:HIV-1 Intasomes Assembled with Excess Integrase C-Terminal Domain Protein Facilitate Structural Studies by Cryo-EM and Reveal the Role of the Integrase C-Terminal Tail in HIV-1 Integration.
Viruses, 16, 2024
5WVB
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BU of 5wvb by Molmil
Crystal structure of a mutant insect group III chitinase complex with (GlcNAc)6 (CAD1-E217L-(GlcNAc)6 ) from Ostrinia furnacalis
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase
Authors:Liu, T, Zhou, Y, Yang, Q.
Deposit date:2016-12-23
Release date:2017-12-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.099 Å)
Cite:The deduced role of a chitinase containing two nonsynergistic catalytic domains
Acta Crystallogr D Struct Biol, 74, 2018
9B9V
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BU of 9b9v by Molmil
Cryo-EM structure of the ZBTB9 BTB domain filament
Descriptor: Zinc finger and BTB domain-containing protein 9
Authors:Park, J, Hunkeler, M, Fischer, E.S.
Deposit date:2024-04-03
Release date:2024-07-24
Method:ELECTRON MICROSCOPY (8.1 Å)
Cite:Polymerization of ZBTB transcription factors regulates chromatin occupancy.
Mol.Cell, 84, 2024
9EUA
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BU of 9eua by Molmil
The FK1 domain of FKBP51 in complex with SAFit-analog 23d
Descriptor: (1-propylpyrazol-4-yl)methyl (2S)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Buffa, V, Hausch, F.
Deposit date:2024-03-27
Release date:2024-06-12
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:1,4-Pyrazolyl-Containing SAFit-Analogues are Selective FKBP51 Inhibitors With Improved Ligand Efficiency and Drug-Like Profile.
Chemmedchem, 19, 2024
9IUY
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BU of 9iuy by Molmil
Cryo-EM structure of mouse heavy-chain apoferritin resolved at 1.51 Angstroms
Descriptor: FE (III) ION, Ferritin heavy chain, MAGNESIUM ION, ...
Authors:Wang, C.H, Wu, K.P, Chang, Y.C.
Deposit date:2024-07-22
Release date:2024-08-21
Method:ELECTRON MICROSCOPY (1.51 Å)
Cite:Cryo-EM structure of mouse heavy-chain apoferritin resolved at 1.51 Angstroms
To Be Published
8XE0
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BU of 8xe0 by Molmil
O-methyltransferase from Lycoris longituba M52W variant complexed with Mg, SAH, and 3,4-dihydroxybenzaldehyde
Descriptor: MAGNESIUM ION, Protocatechuic aldehyde, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Saw, Y.Y.H, Nakashima, Y, Morita, H.
Deposit date:2023-12-11
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
9BJA
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BU of 9bja by Molmil
C. difficile Tcdb cysteine protease domain in complex with IP6
Descriptor: INOSITOL HEXAKISPHOSPHATE, Toxin B
Authors:Veyron, S, Cummer, R.
Deposit date:2024-04-25
Release date:2024-07-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-activity relationship of inositol thiophosphate analogs as allosteric activators of Clostridioides difficile Toxin B
Chemrxiv, 2024
9EU9
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BU of 9eu9 by Molmil
The FK1 domain of FKBP51 in complex with SAFit-analog 15i
Descriptor: (4-chloranyl-1,3-thiazol-5-yl)methyl (2S)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Buffa, V, Hausch, F.
Deposit date:2024-03-27
Release date:2024-06-12
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:1,4-Pyrazolyl-Containing SAFit-Analogues are Selective FKBP51 Inhibitors With Improved Ligand Efficiency and Drug-Like Profile.
Chemmedchem, 19, 2024

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PDB entries from 2024-09-25

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