PDB: 47902 resultsInfo pagesStatus searchChemie searchBIRD

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8BG6	SARS-CoV-2 S protein in complex with pT1644 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, pT1644 Fab heavy chain, ... Authors: Stroeh, L, Hansen, G, Vollmer, B, Krey, T, Benecke, T, Gruenewald, K. Deposit date: 2022-10-27 Release date: 2023-11-08 Method: ELECTRON MICROSCOPY (4.11 Å) Cite: Activity of broadly neutralizing antibodies against sarbecoviruses: a trade-off between SARS-CoV-2 variants and distant coronaviruses? To be published
8BG4	Crystal structure of the SARS-CoV-2 S RBD in complex with pT1611 scFV Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, pT1611 single-chain Fv Authors: Hansen, G, Ssebyatika, G.L, Krey, T. Deposit date: 2022-10-27 Release date: 2023-11-08 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Activity of broadly neutralizing antibodies against sarbecoviruses: a trade-off between SARS-CoV-2 variants and distant coronaviruses? To be published
8BG8	SARS-CoV-2 S protein in complex with pT1696 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, pT1696 Fab heavy chain, ... Authors: Hansen, G, Benecke, T, Vollmer, B, Gruenewald, K, Krey, T. Deposit date: 2022-10-27 Release date: 2023-11-08 Method: ELECTRON MICROSCOPY (3.64 Å) Cite: Activity of broadly neutralizing antibodies against sarbecoviruses: a trade-off between SARS-CoV-2 variants and distant coronaviruses? To be published
8BW1	Yeast 20S proteasome in complex with an engineered fellutamide derivative (C14QAL) Descriptor: 3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.]PYRAZOLE, CHLORIDE ION, MAGNESIUM ION, ... Authors: Bozhueyuek, K.A.J, Praeve, L, Kegler, C, Kaiser, S, Shi, Y, Kuttenlochner, W, Schenk, L, Groll, M, Hochberg, G.K.A, Bode, H.B. Deposit date: 2022-12-06 Release date: 2023-12-20 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3.25 Å) Cite: Evolution-inspired engineering of nonribosomal peptide synthetases. Science, 383, 2024
8BA8	CryoEM structure of GroEL-ADP.BeF3-Rubisco. Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Chaperonin GroEL, ... Authors: Gardner, S, Saibil, H.R. Deposit date: 2022-10-11 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural basis of substrate progression through the bacterial chaperonin cycle. Proc Natl Acad Sci U S A, 120, 2023
8BWV	Crystal Structure of SilF Cu(I) Descriptor: COPPER (II) ION, SilF Authors: Lithgo, R.M, Carr, S.B, Scott, D.J, Quigley, A. Deposit date: 2022-12-07 Release date: 2024-01-24 Method: X-RAY DIFFRACTION (2.2 Å) Cite: SilF structure with Ag(I) and Cu(I) To Be Published
8B8I	Nanobody (NbLumSyt1) bound to human Syt1 Descriptor: Nanobody (NbLumSyt1), Synaptotagmin-1 Authors: Liu, H, Scaletti, E, Stenmark, P. Deposit date: 2022-10-04 Release date: 2024-04-17 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Nanobody (NbLumSyt1) bound to human Syt1 To Be Published
8BHV	DNA-PK XLF mediated dimer bound to PAXX Descriptor: DNA (24-MER), DNA (26-MER), DNA (27-MER), ... Authors: Hardwick, S.W, Chaplin, A.K. Deposit date: 2022-11-01 Release date: 2023-06-07 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (4.51 Å) Cite: PAXX binding to the NHEJ machinery explains functional redundancy with XLF. Sci Adv, 9, 2023
8BWL	Crystal structure of human Twisted gastrulation protein homolog 1 (TWSG1) in complex with human Growth Differentiation factor 5 (GDF5) and calcium Descriptor: CALCIUM ION, Growth/differentiation factor 5, Twisted gastrulation protein homolog 1 Authors: Malinauskas, T, Rudolf, A.F, Moore, G, Eggington, H, Belnoue-Davis, H, El Omari, K, Woolley, R.E, Griffiths, S.C, Duman, R, Wagner, A, Leedham, S.J, Baldock, C, Ashe, H, Siebold, C. Deposit date: 2022-12-06 Release date: 2024-06-19 Method: X-RAY DIFFRACTION (1.96 Å) Cite: Molecular mechanism of BMP signal control by Twisted gastrulation. Nat Commun, 15, 2024
8BWM	Crystal structure of human Twisted gastrulation protein homolog 1 (TWSG1) in complex with human Growth Differentiation factor 5 (GDF5) and calcium, long-wavelength X-ray dataset (4042 eV) Descriptor: CALCIUM ION, Growth/differentiation factor 5, Twisted gastrulation protein homolog 1 Authors: Malinauskas, T, Rudolf, A.F, Moore, G, Eggington, H, Belnoue-Davis, H, El Omari, K, Woolley, R.E, Griffiths, S.C, Duman, R, Wagner, A, Leedham, S.J, Baldock, C, Ashe, H, Siebold, C. Deposit date: 2022-12-07 Release date: 2024-06-19 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Molecular mechanism of BMP signal control by Twisted gastrulation. Nat Commun, 15, 2024
8BWN	Crystal structure of human Twisted gastrulation protein homolog 1 (TWSG1) in complex with human Growth Differentiation Factor 5 (GDF5) and calcium, long-wavelength X-ray dataset (4010 eV) Descriptor: CALCIUM ION, Growth/differentiation factor 5, Twisted gastrulation protein homolog 1 Authors: Malinauskas, T, Rudolf, A.F, Moore, G, Eggington, H, Belnoue-Davis, H, El Omari, K, Woolley, R.E, Griffiths, S.C, Duman, R, Wagner, A, Leedham, S.J, Baldock, C, Ashe, H, Siebold, C. Deposit date: 2022-12-07 Release date: 2024-06-19 Method: X-RAY DIFFRACTION (2.57 Å) Cite: Molecular mechanism of BMP signal control by Twisted gastrulation. Nat Commun, 15, 2024
8BHY	DNA-PK Ku80 mediated dimer bound to PAXX and XLF Descriptor: DNA (25-MER), DNA (26-MER), DNA (27-MER), ... Authors: Hardwick, S.W, Chaplin, A.K. Deposit date: 2022-11-01 Release date: 2023-06-07 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (5.33 Å) Cite: PAXX binding to the NHEJ machinery explains functional redundancy with XLF. Sci Adv, 9, 2023
8BH3	DNA-PK Ku80 mediated dimer bound to PAXX Descriptor: DNA (25-MER), DNA (26-MER), DNA (27-MER), ... Authors: Hardwick, S.W, Chaplin, A.K. Deposit date: 2022-10-28 Release date: 2023-06-07 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (4.55 Å) Cite: PAXX binding to the NHEJ machinery explains functional redundancy with XLF. Sci Adv, 9, 2023
8B3G	C(N)RL4CSA-UVSSA-E2-ubiquitin complex. Descriptor: Cullin-4A, DNA damage-binding protein 1, DNA excision repair protein ERCC-8, ... Authors: Kokic, G, Cramer, P. Deposit date: 2022-09-16 Release date: 2024-09-04 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Structural basis for RNA polymerase II ubiquitylation and inactivation in transcription-coupled repair. Nat.Struct.Mol.Biol., 31, 2024
8C5C	microtubule decorated with tubulin oligomers in presence of APC C-terminal domain. (here only map corresponding to the 13-pf microtubule is represented) Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Serre, L, Arnal, I. Deposit date: 2023-01-06 Release date: 2023-01-25 Last modified: 2023-02-01 Method: ELECTRON MICROSCOPY (5.3 Å) Cite: The mitotic role of adenomatous polyposis coli requires its bilateral interaction with tubulin and microtubules. J.Cell.Sci., 136, 2023
8BYW	Rut B structure Descriptor: Ureidoacrylate amidohydrolase RutB Authors: Rajendran, C, Sterner, R, Busch, M. Deposit date: 2022-12-14 Release date: 2023-01-25 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.59 Å) Cite: Structural and Functional Characterization of the Ureidoacrylate Amidohydrolase RutB from Escherichia coli . Biochemistry, 62, 2023
8C4I	Ligand-free Crystal Structure of the decameric Sulfofructose Transaldolase BmSF-TAL Descriptor: BmSF-TAL Authors: Snow, A.J.D, Sharma, M, Davies, G.J. Deposit date: 2023-01-04 Release date: 2023-02-22 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structure and mechanism of sulfofructose transaldolase, a key enzyme in sulfoquinovose metabolism. Structure, 31, 2023
8CIA	Crystal structure of the kelch domain of human KLHL20 Descriptor: Kelch like family member 20, Kelch-like protein 20 Authors: Sweeney, M.N, Bradshaw, W.J, Chen, Z, Bullock, A.N. Deposit date: 2023-02-09 Release date: 2023-03-22 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (3.72 Å) Cite: Crystal structure of the kelch domain of human KLHL20 To Be Published
8CEM	Structure of bovine native C3, re-refinement Descriptor: Complement C3 alpha chain, Complement C3 beta chain, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Andersen, G.R, Fredslund, F. Deposit date: 2023-02-02 Release date: 2023-04-05 Method: X-RAY DIFFRACTION (3 Å) Cite: The structure of bovine complement component 3 reveals the basis for thioester function. J Mol Biol, 361, 2006
8CJH	Architecture of a PKS-NRPS hybrid megaenzyme involved in the biosynthesis of the genotoxin colibactin Descriptor: Colibactin hybrid non-ribosomal peptide synthetase/type I polyketide synthase ClbK Authors: Bonhomme, S, Dessen, A, Macheboeuf, P. Deposit date: 2023-02-13 Release date: 2023-04-26 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (2.982 Å) Cite: Architecture of a PKS-NRPS hybrid megaenzyme involved in the biosynthesis of the genotoxin colibactin. Structure, 31, 2023
8C1P	Active state homomeric GluA1 AMPA receptor in complex with TARP gamma 3 Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, CYCLOTHIAZIDE, ... Authors: Zhang, D, Ivica, J, Krieger, J.M, Ho, H, Yamashita, K, Cais, O, Greger, I. Deposit date: 2022-12-21 Release date: 2023-08-30 Last modified: 2023-10-11 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structural mobility tunes signalling of the GluA1 AMPA glutamate receptor. Nature, 621, 2023
8C2S	Cryo-EM structure NDUFS4 knockout complex I from Mus musculus heart (Class 1). Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, Acyl carrier protein, ... Authors: Yin, Z, Bridges, H.R, Agip, A.N.A, Hirst, J. Deposit date: 2022-12-22 Release date: 2023-12-20 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structural insights into respiratory complex I deficiency and assembly from the mitochondrial disease-related ndufs4 -/- mouse. Embo J., 43, 2024
8COI	Human adenovirus-derived synthetic ADDobody binder Descriptor: ADDobody Authors: Buzas, D, Toelzer, C, Gupta, K, Berger-Schaffitzel, C, Berger, I. Deposit date: 2023-02-28 Release date: 2023-12-27 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (3.17 Å) Cite: Engineering the ADDobody protein scaffold for generation of high-avidity ADDomer super-binders. Structure, 32, 2024
8C1L	Crystal structure of HNF4 alpha LBD in complexes with palmitic acid and GRIP-1 peptide Descriptor: 1,2-ETHANEDIOL, Hepatocyte nuclear factor 4-alpha, Nuclear receptor coactivator 2, ... Authors: Ni, X, Merk, D, Zhubi, R, Knapp, S, Structural Genomics Consortium (SGC) Deposit date: 2022-12-20 Release date: 2024-01-10 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of HNF4 alpha LBD in complexes with palmitic acid and GRIP-1 peptide To Be Published
8C8H	Cryo EM structure of the vaccinia complete RNA polymerase complex lacking the capping enzyme Descriptor: Core protein E11, DNA-directed RNA polymerase 133 kDa polypeptide, DNA-directed RNA polymerase 147 kDa polypeptide, ... Authors: Grimm, G, Bartuli, J, Fischer, U. Deposit date: 2023-01-20 Release date: 2024-01-31 Method: ELECTRON MICROSCOPY (3.84 Å) Cite: Cryo EM structure of the vaccinia complete RNA polymerase complex lacking the capping enzyme To Be Published

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