Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3ILJ
DownloadVisualize
BU of 3ilj by Molmil
Crystal structure of E. coli HPPK(D95A) in complex with MgAMPCPP
Descriptor: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, ACETATE ION, CHLORIDE ION, ...
Authors:Blaszczyk, J, Li, Y, Yan, H, Ji, X.
Deposit date:2009-08-07
Release date:2010-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural and functional roles of residues D95 and D97 in E. coli HPPK
To be Published
5K54
DownloadVisualize
BU of 5k54 by Molmil
Human muscle fructose-1,6-bisphosphatase E69Q mutant in active R-state
Descriptor: Fructose-1,6-bisphosphatase isozyme 2
Authors:Barciszewski, J, Wisniewski, J, Kolodziejczyk, R, Dzugaj, A, Jaskolski, M, Rakus, D.
Deposit date:2016-05-23
Release date:2017-06-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.717 Å)
Cite:Structural studies of human muscle FBPase
To Be Published
3MHR
DownloadVisualize
BU of 3mhr by Molmil
14-3-3 sigma in complex with YAP pS127-peptide
Descriptor: 14-3-3 protein sigma, CALCIUM ION, CHLORIDE ION, ...
Authors:Schumacher, B, Skwarczynska, M, Rose, R, Ottmann, C.
Deposit date:2010-04-08
Release date:2010-09-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structure of a 14-3-3[sigma]-YAP phosphopeptide complex at 1.15 A resolution
Acta Crystallogr.,Sect.F, 66, 2010
2WDW
DownloadVisualize
BU of 2wdw by Molmil
The Native Crystal Structure of the Primary Hexose Oxidase (Dbv29) in Antibiotic A40926 Biosynthesis
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, PUTATIVE HEXOSE OXIDASE
Authors:Liu, Y.-C, Li, Y.-S, Lyu, S.-Y, Chen, Y.-H, Chan, H.-C, Huang, C.-J, Huang, Y.-T, Chen, G.-H, Chou, C.-C, Tsai, M.-D, Li, T.-L.
Deposit date:2009-03-27
Release date:2010-04-07
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Interception of Teicoplanin Oxidation Intermediates Yields New Antimicrobial Scaffolds
Nat.Chem.Biol., 7, 2011
3SWK
DownloadVisualize
BU of 3swk by Molmil
Crystal structure of vimentin coil1B fragment
Descriptor: Vimentin
Authors:Chernyatina, A.A, Strelkov, S.V.
Deposit date:2011-07-14
Release date:2012-08-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Atomic structure of the vimentin central alpha-helical domain and its implications for intermediate filament assembly.
Proc.Natl.Acad.Sci.USA, 109, 2012
3GD3
DownloadVisualize
BU of 3gd3 by Molmil
Crystal structure of a naturally folded murine apoptosis inducing factor
Descriptor: Apoptosis-inducing factor 1, mitochondrial, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Sevrioukova, I.F.
Deposit date:2009-02-23
Release date:2009-05-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Redox-linked conformational dynamics in apoptosis-inducing factor
J.Mol.Biol., 390, 2009
6KO6
DownloadVisualize
BU of 6ko6 by Molmil
Crystal structure of AMPPNP bound Cka1 from C. neoformans
Descriptor: CMGC/CK2 protein kinase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Cho, H.S, Yoo, Y.
Deposit date:2019-08-08
Release date:2019-11-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural analysis of fungal pathogenicity-related casein kinase alpha subunit, Cka1, in the human fungal pathogen Cryptococcus neoformans.
Sci Rep, 9, 2019
5TZ1
DownloadVisualize
BU of 5tz1 by Molmil
Crystal structure of sterol 14-alpha demethylase (CYP51) from Candida albicans in complex with the tetrazole-based antifungal drug candidate VT1161 (VT1)
Descriptor: (R)-2-(2,4-Difluorophenyl)-1,1-difluoro-3-(1H-tetrazol-1-yl)-1-(5-(4-(2,2,2-trifluoroethoxy)phenyl)pyridin-2-yl)propan-2-ol, PROTOPORPHYRIN IX CONTAINING FE, Sterol 14-alpha demethylase
Authors:Hargrove, T, Wawrzak, Z, Lepesheva, G.
Deposit date:2016-11-21
Release date:2017-03-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural analyses of Candida albicans sterol 14 alpha-demethylase complexed with azole drugs address the molecular basis of azole-mediated inhibition of fungal sterol biosynthesis.
J. Biol. Chem., 292, 2017
2WTY
DownloadVisualize
BU of 2wty by Molmil
Crystal structure of the homodimeric MafB in complex with the T-MARE binding site
Descriptor: DNA (5'-D(*TP*AP*AP*TP*TP*GP*CP*TP*GP*AP*CP*TP*CP*AP *GP*CP*AP*AP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*TP*TP*GP*CP*TP*GP*AP*GP*TP*CP*AP *GP*CP*AP*AP*TP*T)-3'), MAGNESIUM ION, ...
Authors:Consani Textor, L, Holton, S, Wilmanns, M.
Deposit date:2009-09-25
Release date:2010-12-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Design of a bZIP Transcription Factor with Homo/Heterodimer-Induced DNA-Binding Preference.
Structure, 22, 2014
3DRM
DownloadVisualize
BU of 3drm by Molmil
2.2 Angstrom Crystal Structure of Thr114Phe Alpha1-Antitrypsin
Descriptor: Alpha-1-antitrypsin
Authors:Gooptu, B, Nobeli, I, Purkiss, A, Phillips, R.L, Mallya, M, Lomas, D.A, Barrett, T.E.
Deposit date:2008-07-11
Release date:2009-03-31
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystallographic and cellular characterisation of two mechanisms stabilising the native fold of alpha1-antitrypsin: implications for disease and drug design.
J.Mol.Biol., 387, 2009
3BGC
DownloadVisualize
BU of 3bgc by Molmil
HIV-1 protease in complex with a benzyl decorated oligoamine
Descriptor: CHLORIDE ION, N,N'-(iminodiethane-2,1-diyl)bis(4-amino-N-benzylbenzenesulfonamide), Protease
Authors:Boettcher, J, Blum, A, Sammet, B, Heine, A, Diederich, W.E, Klebe, G.
Deposit date:2007-11-26
Release date:2008-09-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Achiral oligoamines as versatile tool for the development of aspartic protease inhibitors
Bioorg.Med.Chem., 16, 2008
1CLF
DownloadVisualize
BU of 1clf by Molmil
CLOSTRIDIUM PASTEURIANUM FERREDOXIN
Descriptor: FERREDOXIN, IRON/SULFUR CLUSTER
Authors:Bertini, I, Donaire, A, Feinberg, B.A, Luchinat, C, Piccioli, M, Yuan, H.
Deposit date:1995-06-21
Release date:1996-01-29
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the oxidized 2[4Fe-4S] ferredoxin from Clostridium pasteurianum.
Eur.J.Biochem., 232, 1995
5UW5
DownloadVisualize
BU of 5uw5 by Molmil
PCY1 H695A Variant in Complex with Follower Peptide
Descriptor: CACODYLATE ION, CALCIUM ION, Peptide cyclase 1, ...
Authors:Chekan, J.R, Nair, S.K.
Deposit date:2017-02-20
Release date:2017-05-31
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Characterization of the macrocyclase involved in the biosynthesis of RiPP cyclic peptides in plants.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
3S7K
DownloadVisualize
BU of 3s7k by Molmil
Structure of thrombin mutant Y225P in the E form
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, POTASSIUM ION, Prothrombin
Authors:Niu, W, Chen, Z, Gandhi, P, Vogt, A, Pozzi, N, Pele, L.A, Zapata, F, Di Cera, E.
Deposit date:2011-05-26
Release date:2011-07-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystallographic and Kinetic Evidence of Allostery in a Trypsin-like Protease.
Biochemistry, 50, 2011
5CEL
DownloadVisualize
BU of 5cel by Molmil
CBH1 (E212Q) CELLOTETRAOSE COMPLEX
Descriptor: 1,4-BETA-D-GLUCAN CELLOBIOHYDROLASE I, 2-acetamido-2-deoxy-beta-D-glucopyranose, COBALT (II) ION, ...
Authors:Divne, C, Stahlberg, J, Jones, T.A.
Deposit date:1997-09-24
Release date:1997-12-24
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High-resolution crystal structures reveal how a cellulose chain is bound in the 50 A long tunnel of cellobiohydrolase I from Trichoderma reesei.
J.Mol.Biol., 275, 1998
2Y92
DownloadVisualize
BU of 2y92 by Molmil
Crystal structure of MAL adaptor protein
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, TOLL/INTERLEUKIN-1 RECEPTOR DOMAIN-CONTAINING ADAPTER PROTEIN,
Authors:Valkov, E, Stamp, A, Martin, J.L, Kobe, B.
Deposit date:2011-02-11
Release date:2011-09-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Crystal Structure of Toll-Like Receptor Adaptor Mal/Tirap Reveals the Molecular Basis for Signal Transduction and Disease Protection.
Proc.Natl.Acad.Sci.USA, 108, 2011
6ANQ
DownloadVisualize
BU of 6anq by Molmil
STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) TERNARY COMPLEX WITH A DOUBLE STRANDED DNA AND AN INCOMING D4TTP AT PH 8.5
Descriptor: 2',3'-DEHYDRO-2',3'-DEOXY-THYMIDINE 5'-TRIPHOSPHATE, DNA PRIMER (5'- D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*GP)-3'), DNA TEMPLATE (5'- D(*AP*TP*GP*AP*AP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3'), ...
Authors:Martinez, S.E, Das, K, Arnold, E.
Deposit date:2017-08-14
Release date:2018-08-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.586 Å)
Cite:Structure of HIV-1 reverse transcriptase/d4TTP complex: Novel DNA cross-linking site and pH-dependent conformational changes.
Protein Sci., 28, 2019
2P8W
DownloadVisualize
BU of 2p8w by Molmil
Fitted structure of eEF2 in the 80S:eEF2:GDPNP cryo-EM reconstruction
Descriptor: Elongation factor 2, Elongation factor Tu-B, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
Authors:Taylor, D.J, Nilsson, J, Merrill, A.R, Andersen, G.R, Nissen, P, Frank, J.
Deposit date:2007-03-23
Release date:2007-05-08
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (11.3 Å)
Cite:Structures of modified eEF2.80S ribosome complexes reveal the role of GTP hydrolysis in translocation.
Embo J., 26, 2007
3KD5
DownloadVisualize
BU of 3kd5 by Molmil
Closed ternary complex of an RB69 gp43 fingers domain mutant complexed with an acyclic GMP terminated primer template pair and phosphonoformic acid.
Descriptor: DNA (5'-D(*CP*GP*TP*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*(4DG))-3'), DNA polymerase, ...
Authors:Zahn, K.E, Doublie, S.
Deposit date:2009-10-22
Release date:2011-04-13
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Phosphonoformic acid inhibits viral replication by trapping the closed form of the DNA polymerase.
J.Biol.Chem., 286, 2011
2YQ0
DownloadVisualize
BU of 2yq0 by Molmil
KSHV LANA (ORF73) C-terminal domain, octameric ring: cubic crystal form
Descriptor: ORF 73, SULFATE ION
Authors:Hellert, J, Krausze, J, Luhrs, T.
Deposit date:2012-11-02
Release date:2013-11-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.911 Å)
Cite:A Structural Basis for Brd2/4-Mediated Host Chromatin Interaction and Oligomer Assembly of Kaposi Sarcoma-Associated Herpesvirus and Murine Gammaherpesvirus Lana Proteins.
Plos Pathog., 9, 2013
2YPZ
DownloadVisualize
BU of 2ypz by Molmil
KSHV LANA (ORF73) C-terminal domain, decameric ring: orthorhombic crystal form
Descriptor: KSHV LANA
Authors:Hellert, J, Krausze, J, Luhrs, T.
Deposit date:2012-11-02
Release date:2013-11-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.199 Å)
Cite:A Structural Basis for Brd2/4-Mediated Host Chromatin Interaction and Oligomer Assembly of Kaposi Sarcoma-Associated Herpesvirus and Murine Gammaherpesvirus Lana Proteins.
Plos Pathog., 9, 2013
1NOY
DownloadVisualize
BU of 1noy by Molmil
DNA POLYMERASE (E.C.2.7.7.7)/DNA COMPLEX
Descriptor: DNA (5'-D(*TP*TP*T)-3'), MANGANESE (II) ION, PROTEIN (DNA POLYMERASE (E.C.2.7.7.7)), ...
Authors:Wang, J, Yu, P, Lin, T.C, Konigsberg, W.H, Steitz, T.A.
Deposit date:1996-02-16
Release date:1996-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of an NH2-terminal fragment of T4 DNA polymerase and its complexes with single-stranded DNA and with divalent metal ions.
Biochemistry, 35, 1996
3GGV
DownloadVisualize
BU of 3ggv by Molmil
HIV Protease, pseudo-symmetric inhibitors
Descriptor: V-1 protease, methyl [(1S)-1-{[(1R,3S,4S)-3-hydroxy-4-{[(2S)-2-(3-{[6-(1-hydroxy-1-methylethyl)pyridin-2-yl]methyl}-2-oxo-2,3-dihydro-1H-imidazol-1-yl)-3,3-dimethylbutanoyl]amino}-5-phenyl-1-(4-pyridin-2-ylbenzyl)pentyl]carbamoyl}-2,2-dimethylpropyl]carbamate
Authors:Stoll, V.S.
Deposit date:2009-03-02
Release date:2009-05-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:2-Pyridyl P1'-substituted symmetry-based human immunodeficiency virus protease inhibitors (A-792611 and A-790742) with potential for convenient dosing and reduced side effects.
J.Med.Chem., 52, 2009
2YPY
DownloadVisualize
BU of 2ypy by Molmil
KSHV LANA (ORF73) C-terminal domain, decameric ring: monoclinic crystal form
Descriptor: CHLORIDE ION, ORF 73
Authors:Hellert, J, Krausze, J, Luhrs, T.
Deposit date:2012-11-02
Release date:2013-11-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.453 Å)
Cite:A Structural Basis for Brd2/4-Mediated Host Chromatin Interaction and Oligomer Assembly of Kaposi Sarcoma-Associated Herpesvirus and Murine Gammaherpesvirus Lana Proteins.
Plos Pathog., 9, 2013
2WOF
DownloadVisualize
BU of 2wof by Molmil
EDTA treated E. coli copper amine oxidase
Descriptor: COPPER (II) ION, PRIMARY AMINE OXIDASE, SODIUM ION
Authors:Smith, M.A, Pirrat, P, Pearson, A.R, Knowles, P.F, Phillips, S.E.V, McPherson, M.J.
Deposit date:2009-07-23
Release date:2010-05-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Exploring the Roles of the Metal Ions in Escherichia Coli Copper Amine Oxidase.
Biochemistry, 49, 2010

225399

PDB entries from 2024-09-25

PDB statisticsPDBj update infoContact PDBjnumon