PDB: 219038 resultsInfo pagesStatus searchChemie searchBIRD

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8ZHK	SARS-CoV-2 spike trimer (6P) in complex with three H18 Fabs, head-to-head aggregate (C3 symmetry) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of H18 Fab, ... Authors: Yan, Q, Gao, X, Liu, B, Hou, R, He, P, Li, Z, Chen, Q, Wang, J, He, J, Chen, L, Zhao, J, Xiong, X. Deposit date: 2024-05-11 Release date: 2024-08-21 Method: ELECTRON MICROSCOPY (6.3 Å) Cite: Antibodies utilizing VL6-57 light chains target a convergent cryptic epitope on SARS-CoV-2 spike protein helping to drive the genesis of Omicron variants To Be Published
8ZHD	SARS-CoV-2 spike trimer (6P) in complex with two R1-26 Fabs Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of R1-26 Fab, ... Authors: Yan, Q, Gao, X, Liu, B, Hou, R, He, P, Li, Z, Chen, Q, Wang, J, He, J, Chen, L, Zhao, J, Xiong, X. Deposit date: 2024-05-10 Release date: 2024-08-21 Method: ELECTRON MICROSCOPY (3.41 Å) Cite: Antibodies utilizing VL6-57 light chains target a convergent cryptic epitope on SARS-CoV-2 spike protein helping to drive the genesis of Omicron variants To Be Published
8ZHL	SARS-CoV-2 spike trimer (6P) in complex with two H18 and two R1-32 Fabs Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of H18 Fab, ... Authors: Yan, Q, Gao, X, Liu, B, Hou, R, He, P, Li, Z, Chen, Q, Wang, J, He, J, Chen, L, Zhao, J, Xiong, X. Deposit date: 2024-05-11 Release date: 2024-08-21 Method: ELECTRON MICROSCOPY (3.96 Å) Cite: Antibodies utilizing VL6-57 light chains target a convergent cryptic epitope on SARS-CoV-2 spike protein helping to drive the genesis of Omicron variants To Be Published
8ZHN	SARS-CoV-2 spike trimer (6P) in complex with three H18 and three R1-32 Fabs (one RBD rotated) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of H18 Fab, ... Authors: Yan, Q, Gao, X, Liu, B, Hou, R, He, P, Li, Z, Chen, Q, Wang, J, He, J, Chen, L, Zhao, J, Xiong, X. Deposit date: 2024-05-11 Release date: 2024-08-21 Method: ELECTRON MICROSCOPY (4.12 Å) Cite: Antibodies utilizing VL6-57 light chains target a convergent cryptic epitope on SARS-CoV-2 spike protein helping to drive the genesis of Omicron variants To Be Published
9B1R	Functional implication of the homotrimeric multidomain vacuolar sorting receptor 1 from Arabidopsis thaliana Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Vacuolar-sorting receptor 1 Authors: Park, H, Youn, B, Park, D.J, Puthanveettil, S.V, Kang, C. Deposit date: 2024-03-13 Release date: 2024-05-15 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Functional implication of the homotrimeric multidomain vacuolar sorting receptor 1 (VSR1) from Arabidopsis thaliana. Sci Rep, 14, 2024
9BRQ	Intact V-ATPase State 3 and synaptophysin complex in mouse brain isolated synaptic vesicles Descriptor: Renin receptor cytoplasmic fragment, Ribonuclease kappa, Synaptophysin, ... Authors: Wang, C, Jiang, W, Yang, K, Wang, X, Guo, Q, Brunger, A.T. Deposit date: 2024-05-11 Release date: 2024-06-19 Last modified: 2024-08-07 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Structure and topography of the synaptic V-ATPase-synaptophysin complex. Nature, 631, 2024
9FT1	Yeast 20S proteasome in complex with epoxyketone inhibitor 13 Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, Probable proteasome subunit alpha type-7, ... Authors: Maurits, E, Huber, E.M, Dekker, P.M, Wang, X, Heinemeyer, W, Florea, B.I, Groll, M, Overkleeft, H.S. Deposit date: 2024-06-23 Release date: 2024-07-10 Last modified: 2024-07-17 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure-based design of peptide epoxyketones selectively targeting the three human immunoproteasome active sites to be published
8ZHI	SARS-CoV-2 spike trimer (6P) in complex with three H18 Fabs Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of H18 Fab, ... Authors: Yan, Q, Gao, X, Liu, B, Hou, R, He, P, Li, Z, Chen, Q, Wang, J, He, J, Chen, L, Zhao, J, Xiong, X. Deposit date: 2024-05-11 Release date: 2024-08-21 Method: ELECTRON MICROSCOPY (6.05 Å) Cite: Antibodies utilizing VL6-57 light chains target a convergent cryptic epitope on SARS-CoV-2 spike protein helping to drive the genesis of Omicron variants To Be Published
8ZHJ	SARS-CoV-2 spike trimer (6P) in complex with three H18 Fabs, head-to-head aggregate (C1 symmetry) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of H18 Fab, ... Authors: Yan, Q, Gao, X, Liu, B, Hou, R, He, P, Li, Z, Chen, Q, Wang, J, He, J, Chen, L, Zhao, J, Xiong, X. Deposit date: 2024-05-11 Release date: 2024-08-21 Method: ELECTRON MICROSCOPY (8.45 Å) Cite: Antibodies utilizing VL6-57 light chains target a convergent cryptic epitope on SARS-CoV-2 spike protein helping to drive the genesis of Omicron variants To Be Published
9BRR	Intact V-ATPase State 3 in synaptophysin knock-out isolated synaptic vesicles Descriptor: Renin receptor cytoplasmic fragment, Ribonuclease kappa, V-type proton ATPase 116 kDa subunit a 1, ... Authors: Wang, C, Jiang, W, Yang, K, Wang, X, Guo, Q, Brunger, A.T. Deposit date: 2024-05-11 Release date: 2024-06-19 Last modified: 2024-08-07 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Structure and topography of the synaptic V-ATPase-synaptophysin complex. Nature, 631, 2024
9FT0	Yeast 20S proteasome in complex with epoxyketone inhibitor 42 Descriptor: (2S)-N-[(2S)-1-[[(1S)-2-cyclohexyl-1-[(2R,3S,6R,7S)-3-methanoyl-2,6-dimethyl-6,7-bis(oxidanyl)-1,4-oxazepan-7-yl]ethyl]amino]-3-(4-methoxyphenyl)-1-oxidanylidene-propan-2-yl]-2-(2-morpholin-4-ylethanoylamino)-4-oxidanyl-butanamide, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, ... Authors: Maurits, E, Huber, E.M, Dekker, P.M, Wang, X, Heinemeyer, W, Florea, B.I, Groll, M, Overkleeft, H.S. Deposit date: 2024-06-23 Release date: 2024-07-10 Last modified: 2024-07-17 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Structure-based design of peptide epoxyketones selectively targeting the three human immunoproteasome active sites to be published
9BKK	Cholecystokinin 1 receptor (CCK1R) sterol 7M mutant, Gq chimera (mGsqi) complex Descriptor: Cholecystokinin receptor type A, Cholecystokinin-8, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... Authors: Harikumar, K.G, Zhao, P, Cary, B.P, Xu, X, Desai, A.J, Mobbs, J.I, Toufaily, C, Furness, S.G.B, Christopoulos, A, Belousoff, M.J, Wootten, D, Sexton, P.M, Miller, L.J. Deposit date: 2024-04-29 Release date: 2024-05-22 Last modified: 2024-08-14 Method: ELECTRON MICROSCOPY (2.51 Å) Cite: Cholesterol-dependent dynamic changes in the conformation of the type 1 cholecystokinin receptor affect ligand binding and G protein coupling. Plos Biol., 22, 2024
9BRA	Intact V-ATPase State 2 and synaptophysin complex in mouse brain isolated synaptic vesicles Descriptor: Renin receptor cytoplasmic fragment, Ribonuclease kappa, Synaptophysin, ... Authors: Wang, C, Jiang, W, Yang, K, Wang, X, Guo, Q, Brunger, A.T. Deposit date: 2024-05-11 Release date: 2024-06-19 Last modified: 2024-08-07 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Structure and topography of the synaptic V-ATPase-synaptophysin complex. Nature, 631, 2024
1NHO	Structural and Functional characterization of a Thioredoxin-like Protein from Methanobacterium thermoautotrophicum Descriptor: Probable Thioredoxin Authors: Amegbey, G.Y, Monzavi, H, Habibi-Nazhad, B, Bhattacharyya, S, Wishart, D.S. Deposit date: 2002-12-19 Release date: 2003-08-26 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural and Functional Characterization of a Thioredoxin-like Protein (Mt0807) from Methanobacterium thermoautotrophicum Biochemistry, 42, 2003
9BKJ	Cholecystokinin 1 receptor (CCK1R) Y140A mutant, Gq chimera (mGsqi) complex Descriptor: AMINO GROUP, Cholecystokinin receptor type A, Cholecystokinin-8, ... Authors: Cary, B.P, Harikumar, K.G, Zhao, P, Desai, A.J, Mobbs, J.M, Toufaily, C, Furness, S.G.B, Christopoulos, A, Belousoff, M.J, Wootten, D, Sexton, P.M, Miller, L.J. Deposit date: 2024-04-29 Release date: 2024-05-22 Last modified: 2024-08-14 Method: ELECTRON MICROSCOPY (2.59 Å) Cite: Cholesterol-dependent dynamic changes in the conformation of the type 1 cholecystokinin receptor affect ligand binding and G protein coupling. Plos Biol., 22, 2024
1MTX	DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF MARGATOXIN BY 1H, 13C, 15N TRIPLE-RESONANCE NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY Descriptor: MARGATOXIN Authors: Johnson, B.A, Stevens, S.P, Williamson, J.M. Deposit date: 1994-12-27 Release date: 1995-11-14 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Determination of the three-dimensional structure of margatoxin by 1H, 13C, 15N triple-resonance nuclear magnetic resonance spectroscopy. Biochemistry, 33, 1994
1NUK	CRYSTAL STRUCTURE OF THE LIGAND-BINDING DOMAIN OF THE EPHB2 RECEPTOR TYROSINE KINASE Descriptor: PROTEIN (TYROSINE-PROTEIN KINASE RECEPTOR EPH) Authors: Himanen, J.-P, Henkemeyer, M, Nikolov, D.B. Deposit date: 1998-10-13 Release date: 1999-10-13 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal structure of the ligand-binding domain of the receptor tyrosine kinase EphB2. Nature, 396, 1998
1NTJ	Model of rat Crry determined by solution scattering, curve fitting and homology modelling Descriptor: complement receptor related protein Authors: Aslam, M, Guthridge, J.M, Hack, B.K, Quigg, R.J, Holers, V.M, Perkins, S.J. Deposit date: 2003-01-30 Release date: 2004-02-03 Last modified: 2024-02-14 Method: SOLUTION SCATTERING (30 Å) Cite: The Extended Multidomain Solution Structures of the Complement Protein Crry and its Chimeric Conjugate Crry-Ig by Scattering, Analytical Ultracentrifugation and Constrained Modelling: Implications for Function and Therapy J.Mol.Biol., 329, 2003
4PK1	Structure of BamB fused to a BamA POTRA domain fragment Descriptor: Chimera protein of Outer membrane protein assembly factors BamA and BamB Authors: Jansen, K.B, Sousa, M.C. Deposit date: 2014-05-13 Release date: 2014-12-10 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Crystal Structure of BamB Bound to a Periplasmic Domain Fragment of BamA, the Central Component of the beta-Barrel Assembly Machine. J.Biol.Chem., 290, 2015
4P8Z	Speciation of a group I intron into a lariat capping ribozyme Descriptor: Didymium iridis partial IGS, 18S rRNA gene, I-DirI gene and partial ITS1 Authors: Meyer, M, Nielsen, H, Olieric, V, Roblin, P, Johansen, S.D, Westhof, E, Masquida, B. Deposit date: 2014-04-01 Release date: 2014-05-28 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.85 Å) Cite: Speciation of a group I intron into a lariat capping ribozyme. Proc.Natl.Acad.Sci.USA, 111, 2014
9F0E	Bacterial histone protein HBb from Bdellovibrio bacteriovorus bound to DNA Descriptor: DNA (5'-D(P*CP*GP*TP*TP*AP*AP*AP*GP*C)-3'), PHOSPHATE ION, Transcription factor CBF/NF-Y/archaeal histone domain-containing protein Authors: Hu, Y, Albrecht, R, Hartmann, M.D. Deposit date: 2024-04-15 Release date: 2024-06-26 Last modified: 2024-08-21 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending. Nucleic Acids Res., 52, 2024
9C4I	Centrolobium microchaete seed lectin (CML) complexed with Man1-3Man-OMe Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, GLYCEROL, ... Authors: Nascimento, K.S, Pinto-Junior, V.R, Lima, F.E.O, Osterne, V.J.S, Oliveira, M.V, Ferreira, V.M.S, Cavada, B.S. Deposit date: 2024-06-04 Release date: 2024-06-26 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Centrolobium microchaete seed lectin (CML) complexed with Man1-3Man-OMe To Be Published
9BGR	X-ray structure of the aminotransferase from Vibrio vulnificus responsible for the biosynthesis of 2,3-diacetamido-4-amino-2,3,4-trideoxy-arabinose in the presence of its external aldimine with 2,3-diacetamido-4-amino-2,3,4-trideoxy-l-arabinose Descriptor: (2R,3R,4R,5R)-3,4-diacetamido-5-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methoxy)oxan-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name), 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ... Authors: Fait, D.J, Thoden, J.B, Holden, H.M. Deposit date: 2024-04-19 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (1.05 Å) Cite: Biochemical Investigation of an Aminotransferase Required for the Production of 2,3,4-triacetamido-2,3,4-trideoxy-L-arabinose To Be Published
9BJK	Inactive mu opioid receptor bound to Nb6, naloxone and NAM Descriptor: Mu-type opioid receptor, Naloxone, Nalpha-[({(1M)-1-[5-(benzyloxy)pyridin-3-yl]naphthalen-2-yl}sulfanyl)acetyl]-3-methoxy-N,4-dimethyl-L-phenylalaninamide, ... Authors: O'Brien, E.S, Wang, H, Kaavya Krishna, K, Zhang, C, Kobilka, B.K. Deposit date: 2024-04-25 Release date: 2024-07-17 Last modified: 2024-08-14 Method: ELECTRON MICROSCOPY (3.26 Å) Cite: A mu-opioid receptor modulator that works cooperatively with naloxone. Nature, 631, 2024
9BHS	Crystal structure of the WDR domain of human DCAF1 in complex with OICR-9939 compound Descriptor: (4P)-N-[(1S)-3-amino-1-(3-chloro-4-fluorophenyl)-3-oxopropyl]-4-(4-chloro-2-fluorophenyl)-5-(1-methyl-1H-pyrazol-4-yl)-1H-pyrrole-3-carboxamide, DDB1- and CUL4-associated factor 1, UNKNOWN LIGAND Authors: kimani, S, Dong, A, Li, Y, Seitova, A, Al-Awar, R, Wilson, B, Ackloo, S, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC) Deposit date: 2024-04-21 Release date: 2024-05-01 Method: X-RAY DIFFRACTION (1.43 Å) Cite: Crystal structure of the WDR domain of human DCAF1 in complex with OICR-9939 compound To be published

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