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1HWY
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BU of 1hwy by Molmil
BOVINE GLUTAMATE DEHYDROGENASE COMPLEXED WITH NAD AND 2-OXOGLUTARATE
Descriptor: 2-OXOGLUTARIC ACID, GLUTAMATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Smith, T.J, Peterson, P.E, Schmidt, T, Fang, J, Stanley, C.A.
Deposit date:2001-01-10
Release date:2001-01-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structures of bovine glutamate dehydrogenase complexes elucidate the mechanism of purine regulation.
J.Mol.Biol., 307, 2001
1HRD
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BU of 1hrd by Molmil
GLUTAMATE DEHYDROGENASE
Descriptor: GLUTAMATE DEHYDROGENASE
Authors:Britton, K.L, Baker, P.J, Stillman, T.J, Rice, D.W.
Deposit date:1996-04-03
Release date:1997-03-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:The structure of Pyrococcus furiosus glutamate dehydrogenase reveals a key role for ion-pair networks in maintaining enzyme stability at extreme temperatures.
Structure, 3, 1995
5XVV
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BU of 5xvv by Molmil
Crystal Structure of Forward Inhibited Aspergillus niger Glutamate Dehydrogenase With Both Apo- and Alpha Ketoglutarate Bound Subunits
Descriptor: 2-OXOGLUTARIC ACID, BETA-MERCAPTOETHANOL, GLYCEROL, ...
Authors:Prakash, P, Punekar, N.S, Bhaumik, P.
Deposit date:2017-06-28
Release date:2018-03-21
Last modified:2018-05-09
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural basis for the catalytic mechanism and alpha-ketoglutarate cooperativity of glutamate dehydrogenase.
J. Biol. Chem., 293, 2018
8KGY
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BU of 8kgy by Molmil
Human glutamate dehydrogenase I
Descriptor: Glutamate dehydrogenase 1, mitochondrial
Authors:Su, M.-Y.
Deposit date:2023-08-20
Release date:2023-10-25
Last modified:2023-11-22
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:Cryo-EM structure of the KLHL22 E3 ligase bound to an oligomeric metabolic enzyme.
Structure, 31, 2023
5XVX
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BU of 5xvx by Molmil
Crystal Structure of Aspergillus niger Glutamate Dehydrogenase Complexed With Alpha-ketoglutarate and NADPH
Descriptor: 2-OXOGLUTARIC ACID, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Prakash, P, Punekar, N.S, Bhaumik, P.
Deposit date:2017-06-28
Release date:2018-03-21
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for the catalytic mechanism and alpha-ketoglutarate cooperativity of glutamate dehydrogenase.
J. Biol. Chem., 293, 2018
5XW0
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BU of 5xw0 by Molmil
Crystal Structure of Aspergillus niger Glutamate Dehydrogenase Complexed With Isophthalate and NADPH
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Glutamate dehydrogenase, ...
Authors:Prakash, P, Punekar, N.S, Bhaumik, P.
Deposit date:2017-06-28
Release date:2018-03-21
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for the catalytic mechanism and alpha-ketoglutarate cooperativity of glutamate dehydrogenase.
J. Biol. Chem., 293, 2018
5XVI
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BU of 5xvi by Molmil
Crystal Structure of Aspergillus niger Apo- Glutamate Dehydrogenase
Descriptor: GLYCEROL, Glutamate dehydrogenase
Authors:Prakash, P, Punekar, N.S, Bhaumik, P.
Deposit date:2017-06-28
Release date:2018-03-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for the catalytic mechanism and alpha-ketoglutarate cooperativity of glutamate dehydrogenase.
J. Biol. Chem., 293, 2018
5XWC
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BU of 5xwc by Molmil
Crystal Structure of Aspergillus niger Glutamate Dehydrogenase Complexed With Alpha-iminoglutarate, 2-amino-2-hydroxyglutarate and NADP
Descriptor: (2S)-2-azanyl-2-oxidanyl-pentanedioic acid, (2Z)-2-iminopentanedioic acid, DI(HYDROXYETHYL)ETHER, ...
Authors:Prakash, P, Punekar, N.S, Bhaumik, P.
Deposit date:2017-06-29
Release date:2018-03-21
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis for the catalytic mechanism and alpha-ketoglutarate cooperativity of glutamate dehydrogenase.
J. Biol. Chem., 293, 2018
8KAO
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BU of 8kao by Molmil
Glutamate dehydrogenase-69O
Descriptor: 2-oxopentanoic acid, Glutamate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Sakuraba, H, Ohshima, T.
Deposit date:2023-08-03
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure of glutamate dehydrogenase-69O
To be published
8KAR
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BU of 8kar by Molmil
Glutamate dehydrogenase-AKG
Descriptor: 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, Glutamate dehydrogenase, ...
Authors:Sakuraba, H, Ohshima, T.
Deposit date:2023-08-03
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structure of glutamate dehydrogenase-AKG
To be published
8OWN
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BU of 8own by Molmil
CryoEM structure of glutamate dehydrogenase isoform 2 from Arabidopsis thaliana in apo-form
Descriptor: CALCIUM ION, Glutamate dehydrogenase 2
Authors:Grzechowiak, M, Ruszkowski, M.
Deposit date:2023-04-28
Release date:2023-08-09
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Structural and functional studies of Arabidopsis thaliana glutamate dehydrogenase isoform 2 demonstrate enzyme dynamics and identify its calcium binding site.
Plant Physiol Biochem., 201, 2023
8OWM
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BU of 8owm by Molmil
Crystal structure of glutamate dehydrogenase 2 from Arabidopsis thaliana binding Ca, NAD and 2,2-dihydroxyglutarate
Descriptor: 1,2-ETHANEDIOL, 2,2-bis(oxidanyl)pentanedioic acid, CALCIUM ION, ...
Authors:Grzechowiak, M, Ruszkowski, M.
Deposit date:2023-04-28
Release date:2023-08-09
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and functional studies of Arabidopsis thaliana glutamate dehydrogenase isoform 2 demonstrate enzyme dynamics and identify its calcium binding site.
Plant Physiol Biochem., 201, 2023
8ZMU
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BU of 8zmu by Molmil
GLUTAMATE DEHYDROGENASE (W89F-MUTANT) FROM THERMOCOCCUS PROFUNDUS IN THE UNLIGANDED STATE
Descriptor: ACETIC ACID, GLYCEROL, Glutamate dehydrogenase, ...
Authors:Wakabayashi, T, Matsui, Y, Masayoshi, M.
Deposit date:2024-05-23
Release date:2024-06-05
Method:X-RAY DIFFRACTION (2.028 Å)
Cite:Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by cryoEM-sampling metastable conformation in action
To Be Published
8ZNC
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BU of 8znc by Molmil
Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH, AKG in the steady stage of reaction
Descriptor: 2-OXOGLUTARIC ACID, AMMONIUM ION, Glutamate dehydrogenase, ...
Authors:Wakabayashi, T, Nakasako, M.
Deposit date:2024-05-26
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (2.41 Å)
Cite:Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by crystal structure and cryoEM-sampling of metastable conformation in action
To Be Published
8ZND
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BU of 8znd by Molmil
Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH and a substrate in the steady stage of reaction
Descriptor: Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Wakabayashi, T, Nakasako, M.
Deposit date:2024-05-26
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (2.53 Å)
Cite:Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by crystal structure and cryoEM-sampling of metastable conformation in action
To Be Published
8ZNB
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BU of 8znb by Molmil
Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH in the steady stage of reaction
Descriptor: Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Wakabayashi, T, Nakasako, M.
Deposit date:2024-05-26
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (2.53 Å)
Cite:Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by crystal structure and cryoEM-sampling of metastable conformation in action
To Be Published
8ZNG
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BU of 8zng by Molmil
Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus in complex with NADPH and AKG in the steady stage of reaction
Descriptor: 2-OXOGLUTARIC ACID, Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Wakabayashi, T, Nakasako, M.
Deposit date:2024-05-26
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by crystal structure and cryoEM-sampling of metastable conformation in action
To Be Published
8ZNE
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BU of 8zne by Molmil
Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus in complex with NADP and GLU in the steady stage of reaction
Descriptor: GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Wakabayashi, T, Nakasako, M.
Deposit date:2024-05-26
Release date:2024-06-26
Method:ELECTRON MICROSCOPY (2.64 Å)
Cite:Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by cryoEM-sampling metastable conformation in action
To Be Published
6JNA
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BU of 6jna by Molmil
Cryo-EM structure of glutamate dehydrogenase from Thermococcus profundus
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Glutamate dehydrogenase
Authors:Oide, M, Kato, T, Oroguchi, T, Nakasako, M.
Deposit date:2019-03-14
Release date:2020-02-12
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Energy landscape of domain motion in glutamate dehydrogenase deduced from cryo-electron microscopy.
Febs J., 287, 2020
6DHQ
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BU of 6dhq by Molmil
Bovine glutamate dehydrogenase complexed with NADPH, glutamate, and GTP
Descriptor: GLUTAMIC ACID, GUANOSINE-5'-TRIPHOSPHATE, Glutamate dehydrogenase 1, ...
Authors:Smith, T.J.
Deposit date:2018-05-20
Release date:2018-07-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of bovine glutamate dehydrogenase complexes elucidate the mechanism of purine regulation.
J. Mol. Biol., 307, 2001
6DHN
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BU of 6dhn by Molmil
Bovine glutamate dehydrogenase complexed with Eu3+
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, GLUTAMIC ACID, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Smith, T.J.
Deposit date:2018-05-20
Release date:2018-07-25
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:A novel mechanism of V-type zinc inhibition of glutamate dehydrogenase results from disruption of subunit interactions necessary for efficient catalysis.
FEBS J., 278, 2011
6JN9
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BU of 6jn9 by Molmil
Cryo-EM structure of glutamate dehydrogenase from Thermococcus profundus
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Glutamate dehydrogenase
Authors:Oide, M, Kato, T, Oroguchi, T, Nakasako, M.
Deposit date:2019-03-14
Release date:2020-02-12
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Energy landscape of domain motion in glutamate dehydrogenase deduced from cryo-electron microscopy.
Febs J., 287, 2020
6JNC
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BU of 6jnc by Molmil
Cryo-EM structure of glutamate dehydrogenase from Thermococcus profundus
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Glutamate dehydrogenase
Authors:Oide, M, Kato, T, Oroguchi, T, Nakasako, M.
Deposit date:2019-03-14
Release date:2020-02-12
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Energy landscape of domain motion in glutamate dehydrogenase deduced from cryo-electron microscopy.
Febs J., 287, 2020
6DHK
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BU of 6dhk by Molmil
Bovine glutamate dehydrogenase complexed with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Glutamate dehydrogenase 1, mitochondrial
Authors:Smith, T.J.
Deposit date:2018-05-20
Release date:2018-07-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural studies on ADP activation of mammalian glutamate dehydrogenase and the evolution of regulation.
Biochemistry, 42, 2003
6DQG
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BU of 6dqg by Molmil
Human glutamate dehydrogenase, H454Y mutant
Descriptor: Glutamate dehydrogenase 1, mitochondrial, PHOSPHATE ION
Authors:Smith, T.J.
Deposit date:2018-06-10
Release date:2018-06-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Glutamate dehydrogenase: Structure of a hyperinsulinism mutant, corrections to the atomic model, and insights into a regulatory site.
Proteins, 87, 2019

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