Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8D7S
DownloadVisualize
BU of 8d7s by Molmil
Crystal structure of hen egg white lysozyme at 275 Kelvin
Descriptor: CHLORIDE ION, GLYCEROL, Lysozyme C, ...
Authors:Ribeiro, F.S, Lima, L.M.T.R.
Deposit date:2022-06-07
Release date:2023-05-10
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Linking B-factor and temperature-induced conformational transition.
Biophys.Chem., 298, 2023
8YTK
DownloadVisualize
BU of 8ytk by Molmil
Crystal structure of human prolyl-tRNA synthetase in complex with inhibitor
Descriptor: (2~{S})-~{N}-[3-(4-azanylquinazolin-7-yl)phenyl]sulfonylpyrrolidine-2-carboxamide, 1,2-ETHANEDIOL, Bifunctional glutamate/proline--tRNA ligase
Authors:Luo, Z, Zhou, H.
Deposit date:2024-03-26
Release date:2025-04-02
Last modified:2025-09-17
Method:X-RAY DIFFRACTION (2.553 Å)
Cite:Development of potent inhibitors targeting bacterial prolyl-tRNA synthetase through fluorine scanning-directed activity tuning.
Eur.J.Med.Chem., 291, 2025
7OWB
DownloadVisualize
BU of 7owb by Molmil
Chimeric carminomycin-4-O-methyltransferase (DnrK) with a region from 10-hydroxylase CalMB
Descriptor: Carminomycin 4-O-methyltransferase DnrK,Methyltransferase domain-containing protein, S-ADENOSYL-L-HOMOCYSTEINE, methyl (1R,2R,4S)-2-ethyl-2,5,7-trihydroxy-6,11-dioxo-4-{[2,3,6-trideoxy-3-(dimethylamino)-alpha-L-lyxo-hexopyranosyl]oxy}-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate
Authors:Dinis, P, MetsaKetela, M.
Deposit date:2021-06-17
Release date:2022-07-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Evolution-inspired engineering of anthracycline methyltransferases.
Pnas Nexus, 2, 2023
8D8B
DownloadVisualize
BU of 8d8b by Molmil
Crystal structure of hen egg white lysozyme at 275 Kelvin (Triplicate)
Descriptor: CHLORIDE ION, GLYCEROL, Lysozyme C, ...
Authors:Ribeiro, F.S, Lima, L.M.T.R.
Deposit date:2022-06-08
Release date:2023-05-10
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Linking B-factor and temperature-induced conformational transition.
Biophys.Chem., 298, 2023
7RYX
DownloadVisualize
BU of 7ryx by Molmil
S. CEREVISIAE CYP51 COMPLEXED WITH VT-1129
Descriptor: (2R)-2-(2,4-difluorophenyl)-1,1-difluoro-3-(1H-tetrazol-1-yl)-1-{5-[4-(trifluoromethoxy)phenyl]pyridin-2-yl}propan-2-ol, Lanosterol 14-alpha demethylase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Ruma, Y.N, Sagatova, A, Keniya, M.V, Tyndall, J.D, Monk, B.C.
Deposit date:2021-08-26
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Characterisation of Candida parapsilosis CYP51 as a Drug Target Using Saccharomyces cerevisiae as Host.
J Fungi, 8, 2022
8TLX
DownloadVisualize
BU of 8tlx by Molmil
Crystal structure of MBP and AF9 AHD fusion protein 3AQA in complex with peptidomimetic inhibitor 21a
Descriptor: GLYCEROL, MBP and AF9 AHD fusion protein 3AQA, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Yang, Y, Nikolovska-Coleska, Z.
Deposit date:2023-07-27
Release date:2024-05-29
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (2.097 Å)
Cite:Structural studies of intrinsically disordered MLL-fusion protein AF9 in complex with peptidomimetic inhibitors.
Protein Sci., 33, 2024
8INY
DownloadVisualize
BU of 8iny by Molmil
Crystal Structure of SARS-CoV-2 Main Protease (Mpro) K90R Mutant in Complex with Inhibitor ensitrelvir
Descriptor: 3C-like proteinase, 6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione
Authors:Lin, M, Liu, X.
Deposit date:2023-03-10
Release date:2024-03-13
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Molecular mechanism of ensitrelvir inhibiting SARS-CoV-2 main protease and its variants.
Commun Biol, 6, 2023
8INX
DownloadVisualize
BU of 8inx by Molmil
Crystal Structure of SARS-CoV-2 Main Protease (Mpro) G15S Mutant in Complex with Inhibitor ensitrelvir
Descriptor: 3C-like proteinase, 6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione
Authors:Lin, M, Liu, X.
Deposit date:2023-03-10
Release date:2024-03-13
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Molecular mechanism of ensitrelvir inhibiting SARS-CoV-2 main protease and its variants.
Commun Biol, 6, 2023
8P1O
DownloadVisualize
BU of 8p1o by Molmil
Solubilizer tag effect on PD-L1/inhibitor binding properties for m-terphenyl derivatives
Descriptor: (3~{R})-1-[[4-[2-chloranyl-3-(2,3-dihydro-1,4-benzodioxin-6-yl)phenyl]-2-methoxy-phenyl]methyl]-~{N}-(2-hydroxyethyl)pyrrolidine-3-carboxamide, CHLORIDE ION, Programmed cell death 1 ligand 1, ...
Authors:Plewka, J, Magiera-Mularz, K, Surmiak, E, Kalinowska-Tluscik, J, Holak, T.A.
Deposit date:2023-05-12
Release date:2024-01-31
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Solubilizer Tag Effect on PD-L1/Inhibitor Binding Properties for m -Terphenyl Derivatives.
Acs Med.Chem.Lett., 15, 2024
6A03
DownloadVisualize
BU of 6a03 by Molmil
Structure of pSTING complex
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, SULFATE ION, Stimulator of interferon genes protein
Authors:Yuan, Z.L, Shang, G.J, Cong, X.Y, Gu, L.C.
Deposit date:2018-06-05
Release date:2019-06-19
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.597 Å)
Cite:Crystal structures of porcine STINGCBD-CDN complexes reveal the mechanism of ligand recognition and discrimination of STING proteins.
J.Biol.Chem., 294, 2019
6GFR
DownloadVisualize
BU of 6gfr by Molmil
cyanobacterial GAPDH with NAD
Descriptor: ACETATE ION, Glyceraldehyde-3-phosphate dehydrogenase, MAGNESIUM ION, ...
Authors:McFarlane, C.R, Murray, J.W.
Deposit date:2018-05-01
Release date:2019-05-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.919 Å)
Cite:Structural basis of light-induced redox regulation in the Calvin-Benson cycle in cyanobacteria.
Proc.Natl.Acad.Sci.USA, 116, 2019
6Y33
DownloadVisualize
BU of 6y33 by Molmil
Streptavidin mutant S112R with a biotC5-1 cofactor - an artificial iron hydroxylase
Descriptor: GLYCEROL, Streptavidin, biotC5-1 cofactor
Authors:Serrano-Plana, J, Rumo, C, Rebelein, J.G, Peterson, R.L, Barnet, M, Ward, T.R.
Deposit date:2020-02-17
Release date:2020-07-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Enantioselective Hydroxylation of Benzylic C(sp3)-H Bonds by an Artificial Iron Hydroxylase Based on the Biotin-Streptavidin Technology.
J.Am.Chem.Soc., 142, 2020
6GI3
DownloadVisualize
BU of 6gi3 by Molmil
Structure of Lytic Transglycosylase MltE mutant S73A from E.coli
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Endo-type membrane-bound lytic murein transglycosylase A
Authors:Batuecas, M.T, Hermoso, J.A.
Deposit date:2018-05-09
Release date:2018-10-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:A Structural Dissection of the Active Site of the Lytic Transglycosylase MltE from Escherichia coli.
Biochemistry, 57, 2018
6ZZE
DownloadVisualize
BU of 6zze by Molmil
Structure of the trans-(Tyr39-Pro40) form of the Human Secreted Ly-6/uPAR Related Protein-1 (SLURP-1)
Descriptor: Secreted Ly-6/uPAR-related protein 1
Authors:Paramonov, A.S, Lyukmanova, E.N, Shenkarev, Z.O.
Deposit date:2020-08-04
Release date:2021-01-13
Last modified:2024-11-06
Method:SOLUTION NMR
Cite:Structural Diversity and Dynamics of Human Three-Finger Proteins Acting on Nicotinic Acetylcholine Receptors.
Int J Mol Sci, 21, 2020
8RLO
DownloadVisualize
BU of 8rlo by Molmil
Human Carbonic Anhydrase I in complex with veralipride
Descriptor: Carbonic anhydrase 1, Veralipride, (S)-, ...
Authors:Angeli, A, Ferraroni, M.
Deposit date:2024-01-03
Release date:2025-01-15
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The dopamine D 2 receptors antagonist Veralipride inhibits carbonic anhydrases: solution and crystallographic insights on human isoforms.
Chem Asian J, 19, 2024
6Y4Z
DownloadVisualize
BU of 6y4z by Molmil
The crystal structure of human MACROD2 in space group P43212
Descriptor: L(+)-TARTARIC ACID, Thioredoxin 1,ADP-ribose glycohydrolase MACROD2
Authors:Wazir, S, Maksimainen, M.M, Lehtio, L.
Deposit date:2020-02-24
Release date:2020-09-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Multiple crystal forms of human MacroD2.
Acta Crystallogr.,Sect.F, 76, 2020
8TR3
DownloadVisualize
BU of 8tr3 by Molmil
Cryo-EM structure of HmAb64 scFv in complex with CNE40 SOSIP trimer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CNE40 SOSIP Envelope glycoprotein gp120, ...
Authors:Chan, K.-W, Kong, X.P.
Deposit date:2023-08-09
Release date:2024-06-19
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:Human CD4-binding site antibody elicited by polyvalent DNA prime-protein boost vaccine neutralizes cross-clade tier-2-HIV strains.
Nat Commun, 15, 2024
8G6C
DownloadVisualize
BU of 8g6c by Molmil
GTP Cyclohydrolase-IB with manganese
Descriptor: 1,2-ETHANEDIOL, GTP cyclohydrolase FolE2, MANGANESE (II) ION
Authors:McWhorter, K.L, Amaya Lopez, C.Y, Davis, K.M.
Deposit date:2023-02-14
Release date:2024-02-21
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Combatting melioidosis with chemical synthetic lethality.
Proc.Natl.Acad.Sci.USA, 121, 2024
8RD4
DownloadVisualize
BU of 8rd4 by Molmil
Telomeric RAP1:DNA-PK complex
Descriptor: DNA (41-MER), DNA-dependent protein kinase catalytic subunit, Telomeric repeat-binding factor 2-interacting protein 1, ...
Authors:Eickhoff, P, Fisher, C.E.L, Inian, O, Guettler, S, Douglas, M.E.
Deposit date:2023-12-07
Release date:2025-03-05
Last modified:2025-07-16
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Chromosome end protection by RAP1-mediated inhibition of DNA-PK.
Nature, 642, 2025
6GI1
DownloadVisualize
BU of 6gi1 by Molmil
Crystal structure of the ferric enterobactin esterase (pfeE) mutant(S157A) from Pseudomonas aeruginosa in presence of enterobactin
Descriptor: 1,2-ETHANEDIOL, 2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID, FE (III) ION, ...
Authors:Moynie, L, Naismith, J.H.
Deposit date:2018-05-09
Release date:2018-06-20
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:A Key Role for the Periplasmic PfeE Esterase in Iron Acquisition via the Siderophore Enterobactin in Pseudomonas aeruginosa.
ACS Chem. Biol., 13, 2018
8B54
DownloadVisualize
BU of 8b54 by Molmil
CDK2/cyclin A2 in complex with pyrazolo[4,3-d]pyrimidine inhibitor LGR6768
Descriptor: 1,2-ETHANEDIOL, Cyclin-A2, Cyclin-dependent kinase 2, ...
Authors:Djukic, S, Skerlova, J, Rezacova, P.
Deposit date:2022-09-21
Release date:2023-03-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Characterization of new highly selective pyrazolo[4,3-d]pyrimidine inhibitor of CDK7.
Biomed Pharmacother, 161, 2023
7AOA
DownloadVisualize
BU of 7aoa by Molmil
Structure of the extended MTA1/HDAC1/MBD2/RBBP4 NURD deacetylase complex
Descriptor: Histone deacetylase 1, Histone-binding protein RBBP4, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Millard, C.J, Fairall, L, Ragan, T.J, Savva, C.G, Schwabe, J.W.R.
Deposit date:2020-10-14
Release date:2020-11-11
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (19.4 Å)
Cite:The topology of chromatin-binding domains in the NuRD deacetylase complex.
Nucleic Acids Res., 48, 2020
8DD5
DownloadVisualize
BU of 8dd5 by Molmil
Crystal structure of KAT6A in complex with inhibitor CTx-648 (PF-9363)
Descriptor: 2,6-dimethoxy-N-{4-methoxy-6-[(1H-pyrazol-1-yl)methyl]-1,2-benzoxazol-3-yl}benzene-1-sulfonamide, Histone acetyltransferase KAT6A, ZINC ION
Authors:Greasley, S.E, Johnson, E, Brodsky, O.
Deposit date:2022-06-17
Release date:2023-07-05
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Targeting KAT6A/KAT6B dependencies in breast cancer with a novel selective, orally bioavailable KAT6 inhibitor, CTx-648/PF-9363
To Be Published
6YCR
DownloadVisualize
BU of 6ycr by Molmil
Structure of human PD-L1 in complex with inhibitor
Descriptor: FFIVIRDRVFR(CCS)G(NH2), Programmed cell death 1 ligand 1
Authors:Magiera-Mularz, K, Grudnik, P, Kuska, K, Holak, T.A, Dubin, G.
Deposit date:2020-03-18
Release date:2021-02-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Macrocyclic Peptide Inhibitor of PD-1/PD-L1 Immune Checkpoint
Adv. Ther., 2020
8AD9
DownloadVisualize
BU of 8ad9 by Molmil
Crystal structure of ClpC2 C-terminal domain
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Cyclomarin A, ...
Authors:Taylor, G, Cui, H.J, Leodolter, J, Giese, C, Weber-Ban, E.
Deposit date:2022-07-08
Release date:2023-03-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:ClpC2 protects mycobacteria against a natural antibiotic targeting ClpC1-dependent protein degradation.
Commun Biol, 6, 2023

244693

PDB entries from 2025-11-12

PDB statisticsPDBj update infoContact PDBjnumon