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PDB: 34735 results

8RHK
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Yeast 20S proteasome in complex with a linear oxindole epoxyketone (compound 6)
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, Linear oxindole epoxyketone, ...
Authors:Goetz, M.G, Godwin, K, Price, R, Dorn, R, Merrill-Steskal, G, Hansen, H, Klemmer, W, Produturi, G, Rocha, M, Palmer, M, Molacek, L, Strater, Z, Groll, M.
Deposit date:2023-12-15
Release date:2024-05-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Macrocyclic Oxindole Peptide Epoxyketones-A Comparative Study of Macrocyclic Inhibitors of the 20S Proteasome.
Acs Med.Chem.Lett., 15, 2024
2KCK
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BU of 2kck by Molmil
NMR solution structure of the Northeast Structural Genomics Consortium (NESG) target MrR121A
Descriptor: TPR repeat
Authors:Barb, A.W, Lee, H.-W, Wang, X, Lee, D, Jiang, M, Ciccosanti, C, Xiao, R, Nair, R, Everett, J.K, Swapna, G.V.T, Acton, T.B, Rost, B, Montelione, G.T, Prestegard, J.H, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-12-22
Release date:2009-01-27
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution NMR structure of the Northeast Structural Genomics Target MrR121A
To be Published
5FMG
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BU of 5fmg by Molmil
Structure and function based design of Plasmodium-selective proteasome inhibitors
Descriptor: (2S)-N-[(E,2S)-1-(1H-indol-3-yl)-4-methylsulfonyl-but-3-en-2-yl]-2-[[(2S)-3-(1H-indol-3-yl)-2-(2-morpholin-4-ylethanoylamino)propanoyl]amino]-4-methyl-pentanamide, BETA3 PROTEASOME SUBUNIT, PUTATIVE, ...
Authors:Li, H, O'Donoghue, A.J, van der Linden, W.A, Xie, S.C, Yoo, E, Foe, I.T, Tilley, L, Craik, C.S, da Fonseca, P.C.A, Bogyo, M.
Deposit date:2015-11-04
Release date:2016-03-02
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure and Function Based Design of Plasmodium-Selective Proteasome Inhibitors
Nature, 530, 2016
3AZM
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BU of 3azm by Molmil
Crystal Structure of Human Nucleosome Core Particle Containing H4K79Q mutation
Descriptor: 146-MER DNA, CHLORIDE ION, Histone H2A type 1-B/E, ...
Authors:Iwasaki, W, Tachiwana, H, Kawaguchi, K, Shibata, T, Kagawa, W, Kurumizaka, H.
Deposit date:2011-05-25
Release date:2011-09-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Comprehensive Structural Analysis of Mutant Nucleosomes Containing Lysine to Glutamine (KQ) Substitutions in the H3 and H4 Histone-Fold Domains
Biochemistry, 50, 2011
5XV6
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BU of 5xv6 by Molmil
Crystal structure of ATG101-ATG13HORMA
Descriptor: Autophagy-related protein 101, Autophagy-related protein 13
Authors:Kim, B.-W, Song, H.K.
Deposit date:2017-06-26
Release date:2018-07-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.455 Å)
Cite:The C-terminal region of ATG101 bridges ULK1 and PtdIns3K complex in autophagy initiation.
Autophagy, 14, 2018
5XV4
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BU of 5xv4 by Molmil
Crystal structure of ATG101-ATG13HORMA
Descriptor: Autophagy-related protein 101, Autophagy-related protein 13
Authors:Kim, B.-W, Song, H.K.
Deposit date:2017-06-26
Release date:2018-07-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:The C-terminal region of ATG101 bridges ULK1 and PtdIns3K complex in autophagy initiation.
Autophagy, 14, 2018
5GOA
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BU of 5goa by Molmil
Cryo-EM structure of RyR2 in open state
Descriptor: RyR2, ZINC ION
Authors:Peng, W, Wu, J.P, Yan, N.
Deposit date:2016-07-26
Release date:2016-10-05
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structural basis for the gating mechanism of the type 2 ryanodine receptor RyR2
Science, 354, 2016
5XTF
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BU of 5xtf by Molmil
Crystal structure of the cis-dihydrodiol naphthalene dehydrogenase NahB from Pseudomonas sp. MC1
Descriptor: 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase
Authors:Park, A.K, Kim, H.-W.
Deposit date:2017-06-19
Release date:2017-08-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.095 Å)
Cite:Crystal structure of cis-dihydrodiol naphthalene dehydrogenase (NahB) from Pseudomonas sp. MC1: Insights into the early binding process of the substrate
Biochem. Biophys. Res. Commun., 491, 2017
3B6Z
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BU of 3b6z by Molmil
Lovastatin polyketide enoyl reductase (LovC) complexed with 2'-phosphoadenosyl isomer of crotonoyl-CoA
Descriptor: Enoyl reductase, GLYCEROL, S-{(9R,13R,15S)-17-[(2R,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxy-4-(phosphonooxy)tetrahydrofuran-2-yl]-9,13,15-trihydroxy-10,10-dimethyl-13,15-dioxido-4,8-dioxo-12,14,16-trioxa-3,7-diaza-13,15-diphosphaheptadec-1-yl}(2E)-but-2-enethioate
Authors:Ames, B.D, Smith, P.T, Ma, S.M, Wong, E.W, Xie, X, Vederas, J.C, Tang, Y, Tsai, S.-C.
Deposit date:2007-10-29
Release date:2008-09-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal structure and biochemical studies of the trans-acting polyketide enoyl reductase LovC from lovastatin biosynthesis.
Proc.Natl.Acad.Sci.USA, 109, 2012
3BBZ
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BU of 3bbz by Molmil
Structure of the nucleocapsid-binding domain from the mumps virus phosphoprotein
Descriptor: BROMIDE ION, FORMIC ACID, P protein
Authors:Kingston, R.L, Gay, L.S, Baase, W.S, Matthews, B.W.
Deposit date:2007-11-11
Release date:2008-05-27
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the nucleocapsid-binding domain from the mumps virus polymerase; an example of protein folding induced by crystallization
J.Mol.Biol., 379, 2008
2J6Y
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BU of 2j6y by Molmil
Structural and Functional Characterisation of partner switching regulating the environmental stress response in Bacillus subtilis
Descriptor: PHOSPHOSERINE PHOSPHATASE RSBU
Authors:Hardwick, S.W, Pane-Farre, J, Delumeau, O, Marles-Wright, J, Murray, J.W, Hecker, M, Lewis, R.J.
Deposit date:2006-10-05
Release date:2007-02-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and functional characterization of partner switching regulating the environmental stress response in Bacillus subtilis.
J. Biol. Chem., 282, 2007
1QSQ
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BU of 1qsq by Molmil
CAVITY CREATING MUTATION
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, LYSOZYME
Authors:Gassner, N.C, Baase, W.A, Lindstrom, J, Matthews, B.W.
Deposit date:1999-06-22
Release date:1999-06-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Methionine and alanine substitutions show that the formation of wild-type-like structure in the carboxy-terminal domain of T4 lysozyme is a rate-limiting step in folding.
Biochemistry, 38, 1999
221L
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BU of 221l by Molmil
THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:Blaber, M, Matthews, B.W.
Deposit date:1993-05-28
Release date:1994-01-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Energetic cost and structural consequences of burying a hydroxyl group within the core of a protein determined from Ala-->Ser and Val-->Thr substitutions in T4 lysozyme.
Biochemistry, 32, 1993
7V37
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BU of 7v37 by Molmil
Crystal structure of apo-NP exonuclease
Descriptor: Nucleoprotein, ZINC ION
Authors:Hsiao, Y.Y, Huang, K.W.
Deposit date:2021-08-10
Release date:2021-12-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.403 Å)
Cite:Targeted Covalent Inhibitors Allosterically Deactivate the DEDDh Lassa Fever Virus NP Exonuclease from Alternative Distal Sites.
Jacs Au, 1, 2021
5XYW
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BU of 5xyw by Molmil
Crystal structure of drosophila simulans Rhino chromoshadow domain in complex with N-terminal domain
Descriptor: GD21652, Rhino
Authors:Yu, B.W, Huang, Y.
Deposit date:2017-07-10
Release date:2018-06-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.705 Å)
Cite:Structural insights into Rhino-Deadlock complex for germline piRNA cluster specification
EMBO Rep., 19, 2018
5XZ0
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BU of 5xz0 by Molmil
Staphylococcal Enterotoxin B (SEB) mutant S19 - N23A, Y90A, R110A and F177A
Descriptor: Staphylococcal enterotoxin B
Authors:Jeong, W.H, Song, D.H, Hur, G.H, Jeong, S.T.
Deposit date:2017-07-11
Release date:2017-11-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.002 Å)
Cite:Structure of the staphylococcal enterotoxin B vaccine candidate S19 showing eliminated superantigen activity
Acta Crystallogr F Struct Biol Commun, 73, 2017
2YJ1
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BU of 2yj1 by Molmil
Puma BH3 foldamer in complex with Bcl-xL
Descriptor: ALPHA-BETA-PUMA BH3 FOLDAMER, BCL-2-LIKE PROTEIN 1
Authors:Lee, E.F, Smith, B.J, Horne, W.S, Mayer, K.N, Evangelista, M, Colman, P.M, Gellman, S.H, Fairlie, W.D.
Deposit date:2011-05-18
Release date:2011-10-12
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Structural Basis of Bcl-Xl Recognition by a Bh3-Mimetic Alpha-Beta-Peptide Generated Via Sequence-Based Design
Chembiochem, 12, 2011
2YCM
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BU of 2ycm by Molmil
Inhibitors of herbicidal target IspD
Descriptor: 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE, CHLOROPLASTIC, 6-BENZYL-5-CHLORO-7-HYDROXYPYRAZOLO[1,5-A]PYRIMIDINE-3-CARBOXYLIC ACID, ...
Authors:Hoeffken, H.W.
Deposit date:2011-03-16
Release date:2011-08-24
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Inhibitors of the Herbicidal Target Ispd: Allosteric Site Binding.
Angew.Chem.Int.Ed.Engl., 50, 2011
6BF8
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BU of 6bf8 by Molmil
Cryo-EM structure of human insulin degrading enzyme in complex with insulin
Descriptor: Insulin-degrading enzyme
Authors:Liang, W.G, Zhang, Z, Bailey, L.J, Kossiakoff, A.A, Tan, Y.Z, Wei, H, Carragher, B, Potter, S.C, Tang, W.J.
Deposit date:2017-10-26
Release date:2018-04-04
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Ensemble cryoEM elucidates the mechanism of insulin capture and degradation by human insulin degrading enzyme.
Elife, 7, 2018
2WTI
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BU of 2wti by Molmil
CRYSTAL STRUCTURE OF CHK2 IN COMPLEX WITH AN INHIBITOR
Descriptor: 1,2-ETHANEDIOL, 4-[2-AMINO-5-(2,3-DIHYDROTHIENO[3,4-B][1,4]DIOXIN-5-YL)PYRIDIN-3-YL]BENZAMIDE, CHECKPOINT KINASE 2, ...
Authors:Hilton, S, Naud, S, Caldwell, J.J, Boxall, K, Burns, S, Anderson, V.E, Antoni, L, Allen, C.E, Pearl, L.H, Oliver, A.W, Aherne, G.W, Garrett, M.D, Collins, I.
Deposit date:2009-09-16
Release date:2009-12-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Identification and Characterisation of 2-Aminopyridine Inhibitors of Checkpoint Kinase 2
Bioorg.Med.Chem., 18, 2010
8W74
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BU of 8w74 by Molmil
Fe-O nanocluster of form-II in the 4-fold channel of Ureaplasma diversum ferritin
Descriptor: FE (III) ION, Ferritin
Authors:Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
Deposit date:2023-08-30
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W7O
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BU of 8w7o by Molmil
Fe-O nanocluster of form-V in the 4-fold channel of Ureaplasma diversum ferritin
Descriptor: FE (III) ION, Ferritin, MAGNESIUM ION
Authors:Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
Deposit date:2023-08-31
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W6Q
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BU of 8w6q by Molmil
ferritin from Ureaplasma diversum soaking in Fe2+ solution for 0 min
Descriptor: CHLORIDE ION, FE (III) ION, Ferritin, ...
Authors:Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
Deposit date:2023-08-29
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W6S
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BU of 8w6s by Molmil
Ferritin from Ureaplasma diversum soaking in Fe2+ solution for 2 min
Descriptor: CHLORIDE ION, FE (III) ION, Ferritin, ...
Authors:Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
Deposit date:2023-08-29
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W6M
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BU of 8w6m by Molmil
Native strucutre of ferritin from Ureaplasma diversum
Descriptor: CHLORIDE ION, FE (III) ION, Ferritin, ...
Authors:Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
Deposit date:2023-08-29
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024

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