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PDB: 129 件

5J7N
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Crystal structure of a small heat-shock protein from Xylella fastidiosa reveals a distinct high order structure
分子名称: Low molecular weight heat shock protein
著者Fonseca, E.M.B, Scorsato, V, dos Santos, C.A, Tomazini Jr, A, Aparicio, R, Polikarpov, I.
登録日2016-04-06
公開日2017-04-12
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal structure of a small heat-shock protein from Xylella fastidiosa reveals a distinct high-order structure.
Acta Crystallogr F Struct Biol Commun, 73, 2017
5KSQ
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Stationary phase survival protein E (SurE) from Xylella fastidiosa
分子名称: 5'-nucleotidase SurE, IODIDE ION, MANGANESE (II) ION, ...
著者Machado, A.T.P, Fonseca, E.M.B, Dos Reis, M.A, Saraiva, A.M, Dos Santos, C.A, De Toledo, M.A, Polikarpov, I, De Souza, A.P, Aparicio, R, Iulek, J.
登録日2016-07-09
公開日2017-07-19
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.63 Å)
主引用文献Conformational variability of the stationary phase survival protein E from Xylella fastidiosa revealed by X-ray crystallography, small-angle X-ray scattering studies, and normal mode analysis.
Proteins, 85, 2017
5KSS
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Stationary phase survival protein E (SurE) from Xylella fastidiosa - XFSurE-Ds (Dimer Smaller)
分子名称: 5'-nucleotidase SurE, CHLORIDE ION, IODIDE ION, ...
著者Machado, A.T.P, Fonseca, E.M.B, Dos Reis, M.A, Saraiva, A.M, Dos Santos, C.A, De Toledo, A.M.S, Polikarpov, I, De Souza, A.P, Aparicio, R, Iulek, J.
登録日2016-07-09
公開日2017-07-19
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.82 Å)
主引用文献Conformational variability of the stationary phase survival protein E from Xylella fastidiosa revealed by X-ray crystallography, small-angle X-ray scattering studies, and normal mode analysis.
Proteins, 85, 2017
1HT7
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STRUCTURE OF A DNA DUPLEX CONTAINING A BISTRAND ABASIC SITE LESION STAGGERED IN A 5'-ORIENTATION.
分子名称: 5'-D(*CP*GP*CP*AP*TP*GP*(3DR)P*GP*TP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*AP*(3DR)P*AP*CP*AP*TP*GP*CP*G)-3'
著者Lin, Z, de los Santos, C.
登録日2000-12-29
公開日2001-05-02
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献NMR characterization of clustered bistrand abasic site lesions: effect of orientation on their solution structure.
J.Mol.Biol., 308, 2001
1HT4
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SOLUTION STRUCTURE OF A BISTRAND ABASIC SITE LESION STAGGERED IN A 3'-ORIENTATION.
分子名称: 5'-D(*CP*GP*CP*AP*TP*GP*(3DR)P*GP*TP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*AP*CP*AP*(3DR)P*AP*TP*GP*CP*G)-3'
著者Lin, Z, de los Santos, C.
登録日2000-12-28
公開日2001-05-02
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献NMR characterization of clustered bistrand abasic site lesions: effect of orientation on their solution structure.
J.Mol.Biol., 308, 2001
1FZL
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DNA WITH PYRENE PAIRED AT ABASIC SITES
分子名称: 5'-D(*CP*AP*CP*AP*AP*AP*CP*AP*(PYP)P*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*(3DR)P*TP*GP*TP*TP*TP*GP*TP*G)-3'
著者Smirnov, S, Matray, T.J, Kool, E.T, de los Santos, C.
登録日2000-10-03
公開日2000-10-18
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Integrity of duplex structures without hydrogen bonding: DNA with pyrene paired at abasic sites
Nucleic Acids Res., 30, 2002
1FYI
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11-MER DNA DUPLEX CONTAINING A 2'-DEOXYARISTEROMYCIN 8-OXO-GUANINE BASE PAIR;
分子名称: 5'-D(*CP*AP*GP*TP*GP*(2AR)P*GP*TP*CP*AP*C)-3', 5'-D(*GP*TP*GP*AP*CP*(8OG)P*CP*AP*CP*TP*G)-3'
著者Smirnov, S, Johnson, F, de los Santos, C.
登録日2000-09-30
公開日2000-10-18
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural NMR characterization of an 11-mer DNA Duplex Containing a 2'-deoxyaristeromycin 8-oxo-Guanine pair, nonhydrolyzable substrate analog for the DNA repair enzyme MutY
To be Published
4M29
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Structure of a GH39 Beta-xylosidase from Caulobacter crescentus
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Beta-xylosidase
著者Polo, C.C, Santos, C.R, Correa, J.M, Simao, R.C.G, Seixas, F.A.V, Murakami, M.T.
登録日2013-08-05
公開日2013-08-14
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of a GH39 Beta-xylosidase from Caulobacter crescentus
Thesis
4M1R
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Structure of a novel cellulase 5 from a sugarcane soil metagenomic library
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Cellulase 5
著者Paiva, J.H, Alvarez, T.M, Cairo, J.P, Paixao, D.A, Almeida, R.A, Tonoli, C.C.C, Ruiz, D.M, Ruller, R, Santos, C.R, Squina, F.M, Murakami, M.T.
登録日2013-08-03
公開日2014-02-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure and function of a novel cellulase 5 from sugarcane soil metagenome.
Plos One, 8, 2013
2GE2
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Solution structure of the Duplex DNA Containing the 3-(Deoxyguanosin-N2-yl)-2-Acetoaminofluorene
分子名称: 2-ACETYLAMINOFLUORENE-3-YL, 5'-D(*CP*GP*TP*AP*CP*GP*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3'
著者de los Santos, C, Zaliznyak, T.
登録日2006-03-17
公開日2006-07-04
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structure and Stability of Duplex DNA Containing the 3-(Deoxyguanosin-N(2)-yl)-2-acetylaminofluorene (dG(N(2))-AAF) Lesion: A Bulky Adduct that Persists in Cellular DNA.
Chem.Res.Toxicol., 19, 2006
1SN0
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Crystal Structure Of Sea Bream Transthyretin in complex with thyroxine At 1.9A Resolution
分子名称: 3,5,3',5'-TETRAIODO-L-THYRONINE, SULFATE ION, transthyretin
著者Eneqvist, T, Lundberg, E, Karlsson, A, Huang, S, Santos, C.R, Power, D.M, Sauer-Eriksson, A.E.
登録日2004-03-10
公開日2004-08-03
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献High resolution crystal structures of piscine transthyretin reveal different binding modes for triiodothyronine and thyroxine.
J.Biol.Chem., 279, 2004
3S2C
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Structure of the thermostable GH51 alpha-L-arabinofuranosidase from Thermotoga petrophila RKU-1
分子名称: Alpha-N-arabinofuranosidase
著者Souza, T.A.C.B, Santos, C.R, Souza, A.R, Oldiges, D.P, Ruller, R, Prade, R.A, Squina, F.M, Murakami, M.T.
登録日2011-05-16
公開日2012-02-01
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of a novel thermostable GH51 Alpha-L-arabinofuranosidase from Thermotoga petrophila RKU-1
Protein Sci., 20, 2011
1FZS
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DNA WITH PYRENE PAIRED AT ABASIC SITE
分子名称: 5'-D(*CP*AP*CP*AP*AP*AP*CP*AP*(PYP))-3', 5'-D(*GP*TP*GP*CP*(3DR)P*TP*GP*TP*TP*TP*GP*TP*G)-3'
著者Smirnov, S, Matray, T.J, Kool, E.T, de los Santos, C.
登録日2000-10-04
公開日2000-10-18
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Integrity of duplex structures without hydrogen bonding: DNA with pyrene paired at abasic sites
Nucleic Acids Res., 30, 2002
4KC7
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Crystal Structure of Endo-1,5-alpha-L-arabinanase from Thermotoga petrophila RKU-1
分子名称: CALCIUM ION, DI(HYDROXYETHYL)ETHER, Glycoside hydrolase, ...
著者Nascimento, A.F.Z, Polo, C.C, Santos, C.R, Costa, M.C.M.F, Mesa, A.N, Prade, R.A, Ruller, R, Squina, F.M, Murakami, M.T.
登録日2013-04-24
公開日2014-02-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Mechanistic strategies for catalysis adopted by evolutionary distinct family 43 arabinanases.
J.Biol.Chem., 289, 2014
4KC8
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Crystal Structure of Endo-1,5-alpha-L-arabinanase from Thermotoga petrophila RKU-1 in complex with TRIS
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, Glycoside hydrolase, ...
著者Nascimento, A.F.Z, Polo, C.C, Santos, C.R, Costa, M.C.M.F, Mesa, A.N, Prade, R.A, Ruller, R, Squina, F.M, Murakami, M.T.
登録日2013-04-24
公開日2014-02-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Mechanistic strategies for catalysis adopted by evolutionary distinct family 43 arabinanases.
J.Biol.Chem., 289, 2014
1YCT
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Clustered abasic lesions in dna: nmr solution structure of clustered bistranded +1 abasic lesion
分子名称: 5'-D(*CP*GP*CP*AP*TP*GP*(3DR)P*GP*TP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*AP*(3DR)P*CP*CP*AP*TP*GP*CP*G)-3'
著者Hazel, R.D, de los Santos, C.
登録日2004-12-23
公開日2006-01-10
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR solution structures of bistranded abasic site lesions in DNA.
Biochemistry, 47, 2008
4NPR
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Crystal Structure of the Family 12 Xyloglucanase from Aspergillus niveus
分子名称: SULFATE ION, Xyloglucan-specific endo-beta-1,4-glucanase GH12
著者Cordeiro, R.L, Santos, C.R, Furtado, G.P, Damasio, A.R.L, Polizeli, M.L.T.M, Ward, R.J, Murakami, M.T.
登録日2013-11-22
公開日2014-12-24
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structure of the Family 12 Xyloglucanase from Aspergillus niveus
To be Published
6EFU
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Crystal structure of the double mutant L167W / P172L of the beta-glucosidase from Trichoderma harzianum
分子名称: Beta-glucosidase, NITRATE ION
著者Morais, M.A.B, Santos, C.A, Tonoli, C.C.C, Souza, A.P, Murakami, M.T.
登録日2018-08-17
公開日2019-06-26
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献An engineered GH1 beta-glucosidase displays enhanced glucose tolerance and increased sugar release from lignocellulosic materials.
Sci Rep, 9, 2019
1YCW
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Clustered abasic lesions in dna: nmr solution structures of clustered bistranded-1 abasic lesion
分子名称: 5'-D(*CP*GP*CP*AP*TP*GP*(3DR)P*GP*TP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*AP*CP*CP*(3DR)P*AP*TP*GP*CP*G)-3'
著者Hazel, R.D, de los Santos, C.
登録日2004-12-23
公開日2005-12-06
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR solution structures of bistranded abasic site lesions in DNA.
Biochemistry, 47, 2008
1XCY
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Structure of DNA containing the alpha-anomer of a carbocyclic abasic site
分子名称: 5'-D(*CP*GP*TP*AP*CP*(DXD)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*AP*GP*TP*AP*CP*G)-3'
著者de los Santos, C, El-khateeb, M, Rege, P, Tian, K, Johnson, F.
登録日2004-09-03
公開日2004-10-19
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Impact of the C1 configuration of abasic sites on DNA duplex structure
Biochemistry, 43, 2004
1XCZ
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Structure of DNA containing the beta-anomer of a carbocyclic abasic site
分子名称: 5'-D(*CP*GP*TP*AP*CP*(DXD)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*AP*GP*TP*AP*CP*G)-3'
著者de los Santos, C, El-khateeb, M, Rege, P, Tian, K, Johnson, F.
登録日2004-09-03
公開日2004-10-19
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Impact of the C1 configuration of abasic sites on DNA duplex structure
Biochemistry, 43, 2004
6UQJ
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Crystal structure of the GH39 enzyme from Xanthomonas axonopodis pv. citri
分子名称: Beta-xylosidase
著者Morais, M.A.B, Polo, C.C, Santos, C.R, Murakami, M.T.
登録日2019-10-20
公開日2020-07-22
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.707 Å)
主引用文献Exploring the Molecular Basis for Substrate Affinity and Structural Stability in Bacterial GH39 beta-Xylosidases.
Front Bioeng Biotechnol, 8, 2020
2L2U
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NMR Solution Structures of +3 (5' staggered) Bistranded Abasic Site Lesions in DNA
分子名称: DNA (5'-D(*CP*AP*GP*CP*GP*(3DR)P*GP*TP*AP*TP*AP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*TP*AP*(3DR)P*AP*CP*AP*CP*GP*CP*TP*G)-3')
著者Hazel, R.D, de los Santos, C.
登録日2010-08-27
公開日2010-11-03
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR solution structures of clustered abasic site lesions in DNA: structural differences between 3'-staggered (-3) and 5'-staggered (+3) bistranded lesions.
Biochemistry, 49, 2010
2L2V
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NMR Solution Structures of -3 (3' staggered) Bistranded Abasic Site Lesions in DNA
分子名称: DNA_(5'-D(*CP*AP*GP*CP*TP*AP*TP*GP*(3DR)P*GP*AP*AP*GP*C)-3')_, DNA_(5'-D(*GP*CP*TP*TP*CP*AP*CP*AP*(3DR)P*AP*GP*CP*TP*G)-3')_
著者Hazel, R.D, de los Santos, C.
登録日2010-08-27
公開日2011-07-13
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR solution structures of clustered abasic site lesions in DNA: structural differences between 3'-staggered (-3) and 5'-staggered (+3) bistranded lesions.
Biochemistry, 49, 2010
6UB1
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Crystal structure of a GH128 (subgroup III) curdlan-specific exo-beta-1,3-glucanase from Blastomyces gilchristii (BgGH128_III) in complex with laminaribiose at -3 and -2 subsites
分子名称: GLYCOSIDE HYDROLASE, beta-D-glucopyranose, beta-D-glucopyranose-(1-3)-beta-D-glucopyranose
著者Costa, P.A.C.R, Santos, C.R, Domingues, M.N, Lima, E.A, Mandelli, F, Murakami, M.T.
登録日2019-09-11
公開日2020-05-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural insights into beta-1,3-glucan cleavage by a glycoside hydrolase family.
Nat.Chem.Biol., 16, 2020

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