Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 27407 results

6Y98
DownloadVisualize
BU of 6y98 by Molmil
Crystal Structure of subtype-switched Epithelial Adhesin 9 to 1 A domain (Epa9-CBL2Epa1) from Candida glabrata in complex with beta-lactose
Descriptor: CALCIUM ION, PA14 domain-containing protein, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Hoffmann, D, Diderrich, R, Kock, M, Friederichs, S, Reithofer, V, Essen, L.-O, Moesch, H.-U.
Deposit date:2020-03-06
Release date:2020-07-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Functional reprogramming ofCandida glabrataepithelial adhesins: the role of conserved and variable structural motifs in ligand binding.
J.Biol.Chem., 295, 2020
6Y9F
DownloadVisualize
BU of 6y9f by Molmil
Crystal structure of putative ancestral haloalkane dehalogenase AncHLD3 (node 3)
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Ancestral haloalkane dehalogenase AncHLD3
Authors:Chaloupkova, R, Damborsky, J, Marek, M.
Deposit date:2020-03-09
Release date:2020-11-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Structures of hyperstable ancestral haloalkane dehalogenases show restricted conformational dynamics.
Comput Struct Biotechnol J, 18, 2020
8H6K
DownloadVisualize
BU of 8h6k by Molmil
Cryo-EM structure of human exon-defined spliceosome in the mature B state.
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Zhang, W, Zhan, X, Zhang, X, Bai, R, Lei, J, Yan, C, Shi, Y.
Deposit date:2022-10-18
Release date:2024-05-01
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural insights into human exon-defined spliceosome prior to activation.
Cell Res., 34, 2024
8H6L
DownloadVisualize
BU of 8h6l by Molmil
Cryo-EM structure of human exon-defined spliceosome in the early B state.
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Zhang, W, Zhan, X, Zhang, X, Bai, R, Lei, J, Yan, C, Shi, Y.
Deposit date:2022-10-18
Release date:2024-05-01
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structural insights into human exon-defined spliceosome prior to activation.
Cell Res., 34, 2024
6Y45
DownloadVisualize
BU of 6y45 by Molmil
Crystal Structure of the H33A variant of RsrR
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Rohac, R, Volbeda, A, Fontecilla-Camps, J.C.
Deposit date:2020-02-19
Release date:2020-03-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Electron and Proton Transfers Modulate DNA Binding by the Transcription Regulator RsrR.
J.Am.Chem.Soc., 142, 2020
6Y4O
DownloadVisualize
BU of 6y4o by Molmil
Calmodulin bound to cardiac ryanodine receptor (RyR2) calmodulin binding domain
Descriptor: CALCIUM ION, Calmodulin-2, Ryanodine receptor 2
Authors:Lau, K, Nielsen, L.H, Holt, C, Brohus, M, Sorensen, A.B, Larsen, K.T, Sommer, C, Van Petegem, F, Overgaard, M.T, Wimmer, R.
Deposit date:2020-02-21
Release date:2020-04-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.83549082 Å)
Cite:The arrhythmogenic N53I variant subtly changes the structure and dynamics in the calmodulin N-terminal domain, altering its interaction with the cardiac ryanodine receptor.
J.Biol.Chem., 295, 2020
3RAH
DownloadVisualize
BU of 3rah by Molmil
CDK2 in complex with inhibitor RC-2-22
Descriptor: Cyclin-dependent kinase 2, [4-amino-2-(cyclohexylamino)-1,3-thiazol-5-yl](naphthalen-2-yl)methanone
Authors:Betzi, S, Alam, R, Han, H, Becker, A, Schonbrunn, E.
Deposit date:2011-03-28
Release date:2012-10-31
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Development of highly potent and selective diaminothiazole inhibitors of cyclin-dependent kinases.
J.Med.Chem., 56, 2013
8H6E
DownloadVisualize
BU of 8h6e by Molmil
Cryo-EM structure of human exon-defined spliceosome in the late pre-B state.
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Zhang, W, Zhan, X, Zhang, X, Bai, R, Lei, J, Yan, C, Shi, Y.
Deposit date:2022-10-17
Release date:2024-05-01
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into human exon-defined spliceosome prior to activation.
Cell Res., 34, 2024
6Y84
DownloadVisualize
BU of 6y84 by Molmil
SARS-CoV-2 main protease with unliganded active site (2019-nCoV, coronavirus disease 2019, COVID-19)
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE
Authors:Owen, C.D, Lukacik, P, Strain-Damerell, C.M, Douangamath, A, Powell, A.J, Fearon, D, Brandao-Neto, J, Crawshaw, A.D, Aragao, D, Williams, M, Flaig, R, Hall, D.R, McAuley, K.E, Mazzorana, M, Stuart, D.I, von Delft, F, Walsh, M.A.
Deposit date:2020-03-03
Release date:2020-03-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:COVID-19 main protease with unliganded active site
To Be Published
6OUB
DownloadVisualize
BU of 6oub by Molmil
Carbonic Anhydrase II complexed with benzene sulfonamide MB11-694B
Descriptor: 4-{[(2-hydroxyethyl)carbamoyl]amino}benzene-1-sulfonamide, Carbonic anhydrase 2, GLYCEROL, ...
Authors:Kota, A, McKenna, R.
Deposit date:2019-05-04
Release date:2020-05-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.418 Å)
Cite:Carbonic Anhydrase II complexed with ureido benzene sulfonamide MB11-694B
To Be Published
6Y8Z
DownloadVisualize
BU of 6y8z by Molmil
Structure of Baltic Herring (Clupea Harengus) Phosphoglucomutase 5 (PGM5)
Descriptor: ACETATE ION, CALCIUM ION, GLYCEROL, ...
Authors:Gustafsson, R, Eckhard, U, Selmer, M.
Deposit date:2020-03-06
Release date:2020-12-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure and Characterization of Phosphoglucomutase 5 from Atlantic and Baltic Herring-An Inactive Enzyme with Intact Substrate Binding.
Biomolecules, 10, 2020
6OUE
DownloadVisualize
BU of 6oue by Molmil
Carbonic Anhydrase II complexed with benzene sulfonamide MB11-707A
Descriptor: 4-{[(4-hydroxybutyl)carbamoyl]amino}benzene-1-sulfonamide, Carbonic anhydrase 2, GLYCEROL, ...
Authors:Kota, A, McKenna, R.
Deposit date:2019-05-04
Release date:2020-05-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.415 Å)
Cite:Carbonic Anhydrase II complexed with ureido benzene sulfonamide MB11-707A
To Be Published
6Y9J
DownloadVisualize
BU of 6y9j by Molmil
Crystal Structure of subtype-switched Epithelial Adhesin 1 to 9 A domain (Epa1-CBL2Epa9) from Candida glabrata in complex with beta-lactose
Descriptor: CALCIUM ION, CHLORIDE ION, Epa1p, ...
Authors:Hoffmann, D, Diderrich, R, Kock, M, Friederichs, S, Reithofer, V, Essen, L.-O, Moesch, H.-U.
Deposit date:2020-03-09
Release date:2020-07-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Functional reprogramming ofCandida glabrataepithelial adhesins: the role of conserved and variable structural motifs in ligand binding.
J.Biol.Chem., 295, 2020
6OUJ
DownloadVisualize
BU of 6ouj by Molmil
Carbonic Anhydrase II complexed with benzene sulfonamide MB11-689A
Descriptor: 3-[(1S)-1-(4-nitrophenyl)ethyl]-2-oxo-2,3-dihydro-1,3-benzoxazole-5-sulfonamide, Carbonic anhydrase 2, DIMETHYL SULFOXIDE, ...
Authors:Kota, A, McKenna, R.
Deposit date:2019-05-04
Release date:2020-05-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.466 Å)
Cite:Carbonic Anhydrase II complexed with benzene sulfonamide MB11-689A
To Be Published
6OXC
DownloadVisualize
BU of 6oxc by Molmil
Structure of Mycobacterium tuberculosis methylmalonyl-CoA mutase with adenosyl cobalamin
Descriptor: 5'-DEOXYADENOSINE, COBALAMIN, Methylmalonyl-CoA mutase large subunit, ...
Authors:Purchal, M, Ruetz, M, Banerjee, R, Koutmos, M.
Deposit date:2019-05-13
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Itaconyl-CoA forms a stable biradical in methylmalonyl-CoA mutase and derails its activity and repair.
Science, 366, 2019
6OXX
DownloadVisualize
BU of 6oxx by Molmil
HIV-1 Protease NL4-3 WT in Complex with LR2-18
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-4-[({4-[(1R)-1,2-dihydroxyethyl]phenyl}sulfonyl)(2-methylpropyl)amino]-3-hydroxy-1-phenylbutan-2-yl}carbamate, Protease NL4-3
Authors:Lockbaum, G.J, Rusere, L.N, Lee, S.K, Henes, M, Kosovrasti, K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
Deposit date:2019-05-14
Release date:2019-08-21
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.962 Å)
Cite:HIV-1 Protease Inhibitors Incorporating Stereochemically Defined P2' Ligands To Optimize Hydrogen Bonding in the Substrate Envelope.
J.Med.Chem., 62, 2019
8IDZ
DownloadVisualize
BU of 8idz by Molmil
Beta-glucosidase BglPcC1
Descriptor: Beta-glucosidase
Authors:Zhou, J.P, Zhu, H.R, Zhang, R, Huang, Z.X.
Deposit date:2023-02-14
Release date:2024-02-21
Method:X-RAY DIFFRACTION (4 Å)
Cite:Conversion of ginsenosides using beta-glucosidase BglPcC1
To Be Published
6OQZ
DownloadVisualize
BU of 6oqz by Molmil
Crystal structure of Glucose Isomerase from Non-merohedrally twinned crystals
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Sevvana, M, Ruf, M, Uson, I, Sheldrick, G.M, Herbst-Irmer, R.
Deposit date:2019-04-29
Release date:2019-12-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Non-merohedral twinning: from minerals to proteins.
Acta Crystallogr D Struct Biol, 75, 2019
6OXW
DownloadVisualize
BU of 6oxw by Molmil
HIV-1 Protease NL4-3 WT in Complex with LR-100
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-4-[(2-ethylbutyl)({4-[(1R)-1-hydroxyethyl]phenyl}sulfonyl)amino]-3-hydroxy-1-phenylbutan-2-yl}carbamate, Protease NL4-3
Authors:Lockbaum, G.J, Rusere, L.N, Lee, S.K, Henes, M, Kosovrasti, K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
Deposit date:2019-05-14
Release date:2019-08-21
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.982 Å)
Cite:HIV-1 Protease Inhibitors Incorporating Stereochemically Defined P2' Ligands To Optimize Hydrogen Bonding in the Substrate Envelope.
J.Med.Chem., 62, 2019
8IMS
DownloadVisualize
BU of 8ims by Molmil
Crystal structure of TRAF7 coiled-coil domain
Descriptor: E3 ubiquitin-protein ligase TRAF7
Authors:Hu, R, Lin, L, Lu, Q.
Deposit date:2023-03-07
Release date:2024-01-24
Last modified:2024-07-17
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The structure of TRAF7 coiled-coil trimer provides insight into its function in zebrafish embryonic development.
J Mol Cell Biol, 16, 2024
6OTO
DownloadVisualize
BU of 6oto by Molmil
Carbonic Anhydrase II complexed with ureic benzene sulfonamide MB9-561B
Descriptor: 4-hydroxy-3-({[(pyridin-4-yl)methyl]carbamoyl}amino)benzene-1-sulfonamide, Carbonic anhydrase 2, DIMETHYL SULFOXIDE, ...
Authors:Kota, A, McKenna, R.
Deposit date:2019-05-03
Release date:2020-05-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.496 Å)
Cite:Carbonic Anhydrase II complexed with ureido benzene sulfonamide MB9-561B
To Be Published
6YI9
DownloadVisualize
BU of 6yi9 by Molmil
Crystal structure of the rat cytosolic PCK1, acetylated on Lys244
Descriptor: 1,2-ETHANEDIOL, Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
Authors:Latorre-Muro, P, Baeza, J, Hurtado-Guerrero, R, Hicks, T, Delso, I, Hernandez-Ruiz, C, Velazquez-Campoy, A, Lawton, A.J, Angulo, J, Denu, J.M, Carrodeguas, J.A.
Deposit date:2020-04-01
Release date:2020-12-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Self-acetylation at the active site of phosphoenolpyruvate carboxykinase (PCK1) controls enzyme activity.
J.Biol.Chem., 296, 2021
6OXQ
DownloadVisualize
BU of 6oxq by Molmil
HIV-1 Protease NL4-3 WT in Complex with UMass8
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(1S,2R)-1-benzyl-3-[(2-ethylbutyl){[4-(hydroxymethyl)phenyl]sulfonyl}amino]-2-hydroxypropyl}carbamate, Protease NL4-3, SULFATE ION
Authors:Lockbaum, G.J, Rusere, L.N, Lee, S.K, Henes, M, Kosovrasti, K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
Deposit date:2019-05-14
Release date:2019-08-21
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:HIV-1 Protease Inhibitors Incorporating Stereochemically Defined P2' Ligands To Optimize Hydrogen Bonding in the Substrate Envelope.
J.Med.Chem., 62, 2019
6YLH
DownloadVisualize
BU of 6ylh by Molmil
Rix1-Rea1 pre-60S particle - full composite structure
Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Kater, L, Beckmann, R.
Deposit date:2020-04-07
Release date:2020-07-29
Last modified:2020-09-02
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Construction of the Central Protuberance and L1 Stalk during 60S Subunit Biogenesis.
Mol.Cell, 79, 2020
6OXV
DownloadVisualize
BU of 6oxv by Molmil
HIV-1 Protease NL4-3 WT in Complex with LR-85
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-4-[(2-ethylbutyl)({4-[(1S)-1-hydroxyethyl]phenyl}sulfonyl)amino]-3-hydroxy-1-phenylbutan-2-yl}carbamate, Protease NL4-3
Authors:Lockbaum, G.J, Rusere, L.N, Lee, S.K, Henes, M, Kosovrasti, K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
Deposit date:2019-05-14
Release date:2019-08-21
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.991 Å)
Cite:HIV-1 Protease Inhibitors Incorporating Stereochemically Defined P2' Ligands To Optimize Hydrogen Bonding in the Substrate Envelope.
J.Med.Chem., 62, 2019

225399

PDB entries from 2024-09-25

PDB statisticsPDBj update infoContact PDBjnumon