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PDB: 46226 results

5TTF
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BU of 5ttf by Molmil
Crystal structure of catalytic domain of G9a with MS012
Descriptor: CHLORIDE ION, Histone-lysine N-methyltransferase EHMT2, N4-(1-methylpiperidin-4-yl)-N2-hexyl-6,7-dimethoxyquinazoline-2,4-diamine, ...
Authors:DONG, A, ZENG, H, LIU, J, XIONG, Y, BABAULT, N, JIN, J, TEMPEL, W, Bountra, C, Arrowsmith, C.H, Edwards, A.M, WU, H, BROWN, P.J, Structural Genomics Consortium (SGC)
Deposit date:2016-11-03
Release date:2016-12-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Discovery of Potent and Selective Inhibitors for G9a-Like Protein (GLP) Lysine Methyltransferase.
J. Med. Chem., 60, 2017
4E6P
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BU of 4e6p by Molmil
Crystal structure of a probable sorbitol dehydrogenase (Target PSI-012078) from Sinorhizobium meliloti 1021
Descriptor: 1,2-ETHANEDIOL, Probable sorbitol dehydrogenase (L-iditol 2-dehydrogenase), SODIUM ION
Authors:Kumar, P.R, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2012-03-15
Release date:2012-04-11
Method:X-RAY DIFFRACTION (2.096 Å)
Cite:Crystal structure of a probable sorbitol dehydrogenase from Sinorhizobium meliloti 1021
to be published
8PT3
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BU of 8pt3 by Molmil
ERK2 covelently bound to RU77 cyclohexenone based inhibitor
Descriptor: GLYCEROL, Mitogen-activated protein kinase 1, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Sok, P, Poti, A, Remenyi, A.
Deposit date:2023-07-13
Release date:2024-07-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Targeting a key protein-protein interaction surface on mitogen-activated protein kinases by a Michael acceptor-based cyclic warhead scaffold
To Be Published
6G2V
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BU of 6g2v by Molmil
Crystal structure of the p97 D2 domain in a helical split-washer conformation
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-DIPHOSPHATE, DIMETHYL SULFOXIDE, ...
Authors:Stach, L, Morgan, R.M.L, Freemont, P.S.
Deposit date:2018-03-23
Release date:2019-04-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.903 Å)
Cite:Crystal structure of the catalytic D2 domain of the AAA+ ATPase p97 reveals a putative helical split-washer-type mechanism for substrate unfolding.
Febs Lett., 594, 2020
8PVR
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BU of 8pvr by Molmil
Cryo-EM structure of horse Nhe9 bound to PI(3,5)P2
Descriptor: (2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate, Sodium/hydrogen exchanger 9
Authors:Kokane, S, Meier, P, Gulati, A, Delemotte, L, Drew, D.
Deposit date:2023-07-18
Release date:2024-07-24
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:PIP2 mediated oligomerization of the endosomal sodium/proton exchanger NHE9
To Be Published
4MDF
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BU of 4mdf by Molmil
Structure of bacterial polynucleotide kinase Michaelis complex bound to GTP and DNA
Descriptor: CITRIC ACID, DNA (5'-D(*CP*CP*TP*GP*T)-3'), GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Shuman, S, Das, U, Wang, L.K, Smith, P, Jacewicz, A.
Deposit date:2013-08-22
Release date:2013-11-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.727 Å)
Cite:Structures of bacterial polynucleotide kinase in a Michaelis complex with GTP*Mg2+ and 5'-OH oligonucleotide and a product complex with GDP*Mg2+ and 5'-PO4 oligonucleotide reveal a mechanism of general acid-base catalysis and the determinants of phosphoacceptor recognition.
Nucleic Acids Res., 42, 2014
2D45
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BU of 2d45 by Molmil
Crystal structure of the MecI-mecA repressor-operator complex
Descriptor: 5'-D(P*TP*AP*CP*TP*AP*CP*AP*TP*AP*TP*GP*TP*AP*GP*TP*A)-3', Methicillin resistance regulatory protein mecI
Authors:Safo, M.K, Ko, T.-P, Musayev, F.N, Zhao, Q, Wang, A.H.-J, Archer, G.L.
Deposit date:2005-10-09
Release date:2005-10-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structure of the MecI repressor from Staphylococcus aureus in complex with the cognate DNA operator of mec.
Acta Crystallogr.,Sect.F, 62, 2006
4XLY
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BU of 4xly by Molmil
The complex structure of KS-D75C with substrate CPP
Descriptor: (2E)-3-methyl-5-[(1R,4aR,8aR)-5,5,8a-trimethyl-2-methylidenedecahydronaphthalen-1-yl]pent-2-en-1-yl trihydrogen diphosphate, Uncharacterized protein blr2150
Authors:Hu, Y, Zheng, Y, Ko, T.P, Liu, W, Guo, R.T.
Deposit date:2015-01-14
Release date:2015-02-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structure, function and inhibition of ent-kaurene synthase from Bradyrhizobium japonicum.
Sci Rep, 4, 2014
4PJM
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BU of 4pjm by Molmil
Myosin VI motor domain in the Pi release state, space group P212121 - soaked with PO4 - located in the active site
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, ISOPROPYL ALCOHOL, ...
Authors:Isabet, T, Benisty, H, Llinas, P, Sweeney, H.L, Houdusse, A.
Deposit date:2014-05-12
Release date:2015-04-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:How actin initiates the motor activity of Myosin.
Dev.Cell, 33, 2015
4PVC
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BU of 4pvc by Molmil
Crystal structure of yeast methylglyoxal/ isovaleraldehyde reductase Gre2
Descriptor: NADPH-dependent methylglyoxal reductase GRE2
Authors:Guo, P.C, Bao, Z.Z, Li, W.F, Zhou, C.Z.
Deposit date:2014-03-17
Release date:2014-10-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into the cofactor-assisted substrate recognition of yeast methylglyoxal/isovaleraldehyde reductase Gre2
Biochim.Biophys.Acta, 1844, 2014
6G5F
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BU of 6g5f by Molmil
Crystal structure of an engineered Botulinum Neurotoxin type B mutant E1191M/S1199Y in complex with human synaptotagmin 1
Descriptor: Botulinum neurotoxin type B, GLYCEROL, MALONATE ION, ...
Authors:Masuyer, G, Elliot, M, Favre-Guilmard, C, Liu, S.M, Maignel, J, Beard, M, Carre, D, Kalinichev, M, Lezmi, S, Mir, I, Nicoleau, C, Palan, S, Perier, C, Raban, E, Dong, M, Krupp, J, Stenmark, P.
Deposit date:2018-03-29
Release date:2019-01-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Engineered botulinum neurotoxin B with improved binding to human receptors has enhanced efficacy in preclinical models.
Sci Adv, 5, 2019
7C19
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BU of 7c19 by Molmil
Crystal structure of a dinucleotide-binding protein (Y224A/Y246A) of ABC transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (Form II)
Descriptor: 1,2-ETHANEDIOL, CARBON DIOXIDE, CARBONATE ION, ...
Authors:Kanaujia, S.P, Chandravanshi, M, Samanta, R.
Deposit date:2020-05-02
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural and thermodynamic insights into the novel dinucleotide-binding protein of ABC transporter unveils its moonlighting function.
Febs J., 288, 2021
5ILD
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BU of 5ild by Molmil
Tobacco 5-epi-aristolochene synthase with MES buffer molecule and Mg2+ ions
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5-epi-aristolochene synthase, MAGNESIUM ION
Authors:Koo, H.J, Louie, G.V, Xu, Y, Bowman, M, Noel, J.P.
Deposit date:2016-03-04
Release date:2017-03-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Small-molecule buffer components can directly affect terpene-synthase activity by interacting with the substrate-binding site of the enzyme
To Be Published
2WKN
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BU of 2wkn by Molmil
gamma lactamase from Delftia acidovorans
Descriptor: FORMAMIDASE, ZINC ION
Authors:Isupov, M.N, Line, K, Gonsalvez, I.S, Gange-Harris, P, Lanzotti, M, Saneei, V, Littlechild, J.A.
Deposit date:2009-06-16
Release date:2010-09-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:The Structure of Gamma Lactamase from Delftia Acidovorans
To be Published
4XJZ
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BU of 4xjz by Molmil
Crystal structure of apo NanB sialidase from streptococcus pneumoniae at pH 7.4 in PBS with DMSO
Descriptor: DIMETHYL SULFOXIDE, PHOSPHATE ION, Sialidase B
Authors:Brear, P.
Deposit date:2015-01-09
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:The Hunt for Serendipitous Allosteric Sites: Discovery of a novel allosteric inhibitor of the bacterial sialidase NanB
To be published
7KHX
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BU of 7khx by Molmil
Mouse GITR-GITRL complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Tumor necrosis factor ligand superfamily member 18, ...
Authors:Wang, F, Chau, B, West, S.M, Strop, P.
Deposit date:2020-10-22
Release date:2021-03-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.20569849 Å)
Cite:Structures of mouse and human GITR-GITRL complexes reveal unique TNF superfamily interactions.
Nat Commun, 12, 2021
2X4X
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BU of 2x4x by Molmil
Molecular basis of Histone H3K36me3 recognition by the PWWP domain of BRPF1.
Descriptor: HISTONE H3.2, PEREGRIN, SULFATE ION
Authors:Vezzoli, A, Bonadies, N, Allen, M.D, Freund, S.M.V, Santiveri, C.M, Kvinlaug, B, Huntly, B.J.P, Gottgens, B, Bycroft, M.
Deposit date:2010-02-02
Release date:2010-04-21
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Molecular Basis of Histone H3K36Me3 Recognition by the Pwwp Domain of Brpf1.
Nat.Struct.Mol.Biol., 17, 2010
6GCI
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BU of 6gci by Molmil
Structure of the bongkrekic acid-inhibited mitochondrial ADP/ATP carrier
Descriptor: Bongkrekic acid, CARDIOLIPIN, HEXAETHYLENE GLYCOL, ...
Authors:Ruprecht, J.J, King, M.S, Pardon, E, Aleksandrova, A.A, Zogg, T, Crichton, P.G, Steyaert, J, Kunji, E.R.S.
Deposit date:2018-04-17
Release date:2019-01-09
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The Molecular Mechanism of Transport by the Mitochondrial ADP/ATP Carrier.
Cell, 176, 2019
5LE7
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BU of 5le7 by Molmil
Crystal structure of DARPin-DARPin rigid fusion, variant DD_D12_13_D12
Descriptor: DD_D12_13_D12, SULFATE ION
Authors:Batyuk, A, Wu, Y, Mittl, P.R, Plueckthun, A.
Deposit date:2016-06-29
Release date:2017-08-02
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.104 Å)
Cite:Rigidly connected multispecific artificial binders with adjustable geometries.
Sci Rep, 7, 2017
5IU6
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BU of 5iu6 by Molmil
Crystal structure of E.coli purine nucleoside phosphorylase with 7-deazahypoxanthine
Descriptor: 7H-pyrrolo[2,3-d]pyrimidin-4-ol, Purine nucleoside phosphorylase DeoD-type, SULFATE ION
Authors:Timofeev, V.I, Abramchik, Y.A, Esipov, R.S, Kuranova, I.P.
Deposit date:2016-03-17
Release date:2017-04-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Crystal structure of Escherichia coli purine nucleoside phosphorylase in complex with 7-deazahypoxanthine.
Acta Crystallogr F Struct Biol Commun, 74, 2018
5UDT
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BU of 5udt by Molmil
LarE, a sulfur transferase involved in synthesis of the cofactor for lactate racemase, in complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, Lactate racemization operon protein LarE, PHOSPHATE ION
Authors:Fellner, M, Desguin, B, Hausinger, R.P, Hu, J.
Deposit date:2016-12-28
Release date:2017-08-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.188 Å)
Cite:Structural insights into the catalytic mechanism of a sacrificial sulfur insertase of the N-type ATP pyrophosphatase family, LarE.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
1ACB
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BU of 1acb by Molmil
CRYSTAL AND MOLECULAR STRUCTURE OF THE BOVINE ALPHA-CHYMOTRYPSIN-EGLIN C COMPLEX AT 2.0 ANGSTROMS RESOLUTION
Descriptor: ALPHA-CHYMOTRYPSIN, Eglin C
Authors:Bolognesi, M, Frigerio, F, Coda, A, Pugliese, L, Lionetti, C, Menegatti, E, Amiconi, G, Schnebli, H.P, Ascenzi, P.
Deposit date:1991-11-08
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal and molecular structure of the bovine alpha-chymotrypsin-eglin c complex at 2.0 A resolution.
J.Mol.Biol., 225, 1992
6FSP
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BU of 6fsp by Molmil
Crystal structure of APRT from Thermus thermophilus
Descriptor: PRPP-binding protein, adenine/guanine phosphoribosyltransferase
Authors:Timofeev, V.I, Sinitsyna, E.V, Kostromina, M.A, Muravieva, T.I, Makarov, D.A, Mikheeva, O.O, Kuranova, I.P, Esipov, R.S.
Deposit date:2018-02-20
Release date:2019-03-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of APRT from Thermus thermophilus
To Be Published
8PXB
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BU of 8pxb by Molmil
Cryo-EM structure of horse NHE9 with a extracellular loop
Descriptor: Sodium/hydrogen exchanger 9
Authors:Kokane, S, Meier, P, Matsuoka, R, Drew, D.
Deposit date:2023-07-23
Release date:2024-08-07
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:PIP2 mediated oligomerization of the endosomal sodium/proton exchanger NHE9
To Be Published
5LIX
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BU of 5lix by Molmil
Crystal structure of human AKR1B10 complexed with NADP+ and the inhibitor MK184
Descriptor: 1,2-ETHANEDIOL, Aldo-keto reductase family 1 member B10, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Cousido-Siah, A, Ruiz, F.X, Mitschler, A, Fanfrlik, J, Kamlar, M, Vesely, J, Hobza, P, Podjarny, A.
Deposit date:2016-07-15
Release date:2016-07-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:IDD388 Polyhalogenated Derivatives as Probes for an Improved Structure-Based Selectivity of AKR1B10 Inhibitors.
Acs Chem.Biol., 11, 2016

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