2PA2
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![BU of 2pa2 by Molmil](/molmil-images/mine/2pa2) | Crystal structure of human Ribosomal protein L10 core domain | 分子名称: | 60S ribosomal protein L10, POTASSIUM ION | 著者 | Nishimura, M, Kaminishi, T, Takemoto, C, Kawazoe, M, Yoshida, T, Tanaka, A, Sugano, S, Shirouzu, M, Ohkubo, T, Yokoyama, S, Kobayashi, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2007-03-27 | 公開日 | 2008-03-11 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Crystal Structure of Human Ribosomal Protein L10 Core Domain Reveals Eukaryote-Specific Motifs in Addition to the Conserved Fold J.Mol.Biol., 377, 2008
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7DVV
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![BU of 7dvv by Molmil](/molmil-images/mine/7dvv) | Heme sensor protein PefR from Streptococcus agalactiae bound to operator DNA (28-mer) | 分子名称: | DNA (28-MER), HTH marR-type domain-containing protein | 著者 | Nishinaga, M, Nagai, S, Nishitani, Y, Sugimoto, H, Shiro, Y, Sawai, H. | 登録日 | 2021-01-15 | 公開日 | 2021-09-29 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.49 Å) | 主引用文献 | Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival. Commun Biol, 4, 2021
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6LKT
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![BU of 6lkt by Molmil](/molmil-images/mine/6lkt) | Crystal structure of the Fab fragment of murine monoclonal antibody KH-1 against Human herpesvirus 6B | 分子名称: | antibody Fab Fragment L-chain, antibody Fab fragment H chain | 著者 | Nishimura, M, Novita, B.D, Kato, T, Tjan, L.H, Wang, B, Wakata, A, Poetranto, A.L, Kawabata, A, Tang, H, Aoshi, T, Mori, Y. | 登録日 | 2019-12-20 | 公開日 | 2020-06-17 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Structural basis for the interaction of human herpesvirus 6B tetrameric glycoprotein complex with the cellular receptor, human CD134. Plos Pathog., 16, 2020
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7DVU
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![BU of 7dvu by Molmil](/molmil-images/mine/7dvu) | Crystal structure of heme sensor protein PefR in complex with heme and cyanide | 分子名称: | CYANIDE ION, HTH marR-type domain-containing protein, PROTOPORPHYRIN IX CONTAINING FE | 著者 | Nishinaga, M, Nagai, S, Nishitani, Y, Sugimoto, H, Shiro, Y, Sawai, H. | 登録日 | 2021-01-15 | 公開日 | 2021-09-29 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival. Commun Biol, 4, 2021
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8IHL
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![BU of 8ihl by Molmil](/molmil-images/mine/8ihl) | Overlapping tri-nucleosome | 分子名称: | DNA (353-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | 著者 | Nishimura, M, Fujii, T, Tanaka, H, Maehara, K, Nozawa, K, Takizawa, Y, Ohkawa, Y, Kurumizaka, H. | 登録日 | 2023-02-23 | 公開日 | 2024-01-17 | 最終更新日 | 2024-01-24 | 実験手法 | ELECTRON MICROSCOPY (7.64 Å) | 主引用文献 | Genome-wide mapping and cryo-EM structural analyses of the overlapping tri-nucleosome composed of hexasome-hexasome-octasome moieties. Commun Biol, 7, 2024
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7DVT
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![BU of 7dvt by Molmil](/molmil-images/mine/7dvt) | Crystal structure of heme sensor protein PefR in complex with heme and carbon monoxide | 分子名称: | CARBON MONOXIDE, HTH marR-type domain-containing protein, PROTOPORPHYRIN IX CONTAINING FE | 著者 | Nishinaga, M, Nagai, S, Nishitani, Y, Sugimoto, H, Shiro, Y, Sawai, H. | 登録日 | 2021-01-15 | 公開日 | 2021-09-29 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.09 Å) | 主引用文献 | Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival. Commun Biol, 4, 2021
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7DVR
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![BU of 7dvr by Molmil](/molmil-images/mine/7dvr) | Crystal structure of heme sensor protein PefR from Streptococcus agalactiae in complex with heme | 分子名称: | COBALT (II) ION, HTH marR-type domain-containing protein, PROTOPORPHYRIN IX CONTAINING FE | 著者 | Nishinaga, M, Nagai, S, Nishitani, Y, Sugimoto, H, Shiro, Y, Sawai, H. | 登録日 | 2021-01-15 | 公開日 | 2021-09-29 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival. Commun Biol, 4, 2021
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7F47
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![BU of 7f47 by Molmil](/molmil-images/mine/7f47) | Cryo-EM structure of Rhizobium etli MprF | 分子名称: | (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, Hypothetical conserved protein, [(2R)-1-[[(2R)-3-[(2S)-2,6-bis(azanyl)hexanoyl]oxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (E)-octadec-9-enoate | 著者 | Nishimura, M, Hirano, H, Kobayashi, K, Gill, C.P, Phan, C.N.K, Kise, Y, Kusakizako, T, Yamashita, K, Ito, Y, Roy, H, Nishizawa, T, Nureki, O. | 登録日 | 2021-06-17 | 公開日 | 2022-06-22 | 最終更新日 | 2024-06-12 | 実験手法 | ELECTRON MICROSCOPY (2.99 Å) | 主引用文献 | Cryo-EM structure of Rhizobium etli MprF To Be Published
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6LTG
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![BU of 6ltg by Molmil](/molmil-images/mine/6ltg) | Crystal structure of the Fab fragment of murine monoclonal antibody OHV-3 against Human herpesvirus 6B | 分子名称: | MAGNESIUM ION, antibody Fab fragment H-chain, antibody Fab fragment L-chain | 著者 | Nishimura, M, Novita, B.D, Kato, T, Tjan, L.H, Wang, B, Wakata, A, Poetranto, A.L, Kawabata, A, Tang, H, Aoshi, T, Mori, Y. | 登録日 | 2020-01-22 | 公開日 | 2020-06-17 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.63 Å) | 主引用文献 | Structural basis for the interaction of human herpesvirus 6B tetrameric glycoprotein complex with the cellular receptor, human CD134. Plos Pathog., 16, 2020
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2QKS
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![BU of 2qks by Molmil](/molmil-images/mine/2qks) | |
3AUJ
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![BU of 3auj by Molmil](/molmil-images/mine/3auj) | Structure of diol dehydratase complexed with glycerol | 分子名称: | CALCIUM ION, COBALAMIN, Diol dehydrase alpha subunit, ... | 著者 | Yamanishi, M, Kinoshita, K, Fukuoka, M, Shibata, T, Tobimatsu, T, Toraya, T. | 登録日 | 2011-02-07 | 公開日 | 2012-02-22 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Redesign of coenzyme B(12) dependent diol dehydratase to be resistant to the mechanism-based inactivation by glycerol and act on longer chain 1,2-diols Febs J., 279, 2012
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7XZZ
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![BU of 7xzz by Molmil](/molmil-images/mine/7xzz) | Cryo-EM structure of the nucleosome in complex with p53 | 分子名称: | Cellular tumor antigen p53, DNA (169-MER), Histone H2A type 1-B/E, ... | 著者 | Nishimura, M, Nozawa, K, Takizawa, Y, Kurumizaka, H. | 登録日 | 2022-06-03 | 公開日 | 2022-10-12 | 最終更新日 | 2024-07-03 | 実験手法 | ELECTRON MICROSCOPY (4.07 Å) | 主引用文献 | Structural basis for p53 binding to its nucleosomal target DNA sequence. Pnas Nexus, 1, 2022
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7XZX
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![BU of 7xzx by Molmil](/molmil-images/mine/7xzx) | Cryo-EM structure of the nucleosome in complex with p53 DNA-binding domain | 分子名称: | Cellular tumor antigen p53, DNA (193-MER), Histone H2A type 1-B/E, ... | 著者 | Nishimura, M, Nozawa, K, Takizawa, Y, Kurumizaka, H. | 登録日 | 2022-06-03 | 公開日 | 2022-10-12 | 最終更新日 | 2024-07-03 | 実験手法 | ELECTRON MICROSCOPY (4.53 Å) | 主引用文献 | Structural basis for p53 binding to its nucleosomal target DNA sequence. Pnas Nexus, 1, 2022
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1ZE3
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![BU of 1ze3 by Molmil](/molmil-images/mine/1ze3) | Crystal Structure of the Ternary Complex of FIMD (N-Terminal Domain) with FIMC and the Pilin Domain of FIMH | 分子名称: | 1,2-ETHANEDIOL, Chaperone protein fimC, FimH protein, ... | 著者 | Nishiyama, M, Horst, R, Eidam, O, Herrmann, T, Ignatov, O, Vetsch, M, Bettendorff, P, Jelesarov, I, Grutter, M.G, Wuthrich, K, Glockshuber, R, Capitani, G. | 登録日 | 2005-04-17 | 公開日 | 2005-06-14 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (1.84 Å) | 主引用文献 | Structural basis of chaperone-subunit complex recognition by the type 1 pilus assembly platform FimD. Embo J., 24, 2005
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1IWP
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![BU of 1iwp by Molmil](/molmil-images/mine/1iwp) | Glycerol Dehydratase-cyanocobalamin Complex of Klebsiella pneumoniae | 分子名称: | COBALAMIN, Glycerol Dehydratase Alpha subunit, Glycerol Dehydratase Beta subunit, ... | 著者 | Yamanishi, M, Yunoki, M, Tobimatsu, T, Toraya, T. | 登録日 | 2002-05-28 | 公開日 | 2002-10-02 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | The crystal structure of coenzyme B12-dependent glycerol dehydratase in complex with cobalamin and propane-1,2-diol. Eur.J.Biochem., 269, 2002
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1ZDV
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![BU of 1zdv by Molmil](/molmil-images/mine/1zdv) | Solution Structure of the type 1 pilus assembly platform FimD(25-139) | 分子名称: | Outer membrane usher protein fimD | 著者 | Nishiyama, M, Horst, R, Herrmann, T, Vetsch, M, Bettendorff, P, Ignatov, O, Grutter, M, Wuthrich, K, Glockshuber, R, Capitani, G. | 登録日 | 2005-04-15 | 公開日 | 2005-06-14 | 最終更新日 | 2024-05-22 | 実験手法 | SOLUTION NMR | 主引用文献 | Structural basis of chaperone-subunit complex recognition by the type 1 pilus assembly platform FimD. Embo J., 24, 2005
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1WKI
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![BU of 1wki by Molmil](/molmil-images/mine/1wki) | solution structure of ribosomal protein L16 from thermus thermophilus HB8 | 分子名称: | LSU ribosomal protein L16P | 著者 | Nishimura, M, Yoshida, T, Shirouzu, M, Terada, T, Kuramitsu, S, Yokoyama, S, Ohkubo, T, Kobayashi, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-05-31 | 公開日 | 2004-12-14 | 最終更新日 | 2024-05-01 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution Structure of Ribosomal Protein L16 from Thermus thermophilus HB8 J.Mol.Biol., 344, 2004
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1A0F
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![BU of 1a0f by Molmil](/molmil-images/mine/1a0f) | CRYSTAL STRUCTURE OF GLUTATHIONE S-TRANSFERASE FROM ESCHERICHIA COLI COMPLEXED WITH GLUTATHIONESULFONIC ACID | 分子名称: | GLUTATHIONE S-TRANSFERASE, GLUTATHIONE SULFONIC ACID | 著者 | Nishida, M, Harada, S, Noguchi, S, Inoue, H, Takahashi, K, Satow, Y. | 登録日 | 1997-11-29 | 公開日 | 1999-01-13 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Three-dimensional structure of Escherichia coli glutathione S-transferase complexed with glutathione sulfonate: catalytic roles of Cys10 and His106. J.Mol.Biol., 281, 1998
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1ZDX
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![BU of 1zdx by Molmil](/molmil-images/mine/1zdx) | Solution Structure of the type 1 pilus assembly platform FimD(25-125) | 分子名称: | Outer membrane usher protein fimD | 著者 | Nishiyama, M, Horst, R, Herrmann, T, Vetsch, M, Bettendorff, P, Ignatov, O, Grutter, M, Wuthrich, K, Glockshuber, R, Capitani, G. | 登録日 | 2005-04-15 | 公開日 | 2005-06-14 | 最終更新日 | 2024-05-22 | 実験手法 | SOLUTION NMR | 主引用文献 | Structural basis of chaperone-subunit complex recognition by the type 1 pilus assembly platform FimD. Embo J., 24, 2005
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5WX8
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![BU of 5wx8 by Molmil](/molmil-images/mine/5wx8) | Human herpesvirus 6A immediate early protein 2 C-terminal domain | 分子名称: | Immediate-early protein 2 | 著者 | Nishimura, M, Wang, J, Wakata, A, Sakamoto, K, Mori, Y. | 登録日 | 2017-01-06 | 公開日 | 2017-08-02 | 最終更新日 | 2017-12-06 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Crystal Structure of the DNA-Binding Domain of Human Herpesvirus 6A Immediate Early Protein 2. J. Virol., 91, 2017
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3VKW
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![BU of 3vkw by Molmil](/molmil-images/mine/3vkw) | Crystal Structure of the Superfamily 1 Helicase from Tomato Mosaic Virus | 分子名称: | Replicase large subunit, SULFATE ION | 著者 | Nishikiori, M, Sugiyama, S, Xiang, H, Niiyama, M, Ishibashi, K, Inoue, T, Ishikawa, M, Matsumura, H, Katoh, E. | 登録日 | 2011-11-22 | 公開日 | 2012-07-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Crystal structure of the superfamily 1 helicase from tomato mosaic virus J.Virol., 86, 2012
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1GCQ
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![BU of 1gcq by Molmil](/molmil-images/mine/1gcq) | CRYSTAL STRUCTURE OF VAV AND GRB2 SH3 DOMAINS | 分子名称: | (4R)-2-METHYLPENTANE-2,4-DIOL, GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2, VAV PROTO-ONCOGENE | 著者 | Nishida, M, Nagata, K, Hachimori, Y, Ogura, K, Inagaki, F. | 登録日 | 2000-08-08 | 公開日 | 2001-08-08 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.68 Å) | 主引用文献 | Novel recognition mode between Vav and Grb2 SH3 domains. EMBO J., 20, 2001
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1GCP
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![BU of 1gcp by Molmil](/molmil-images/mine/1gcp) | CRYSTAL STRUCTURE OF VAV SH3 DOMAIN | 分子名称: | VAV PROTO-ONCOGENE | 著者 | Nishida, M, Nagata, K, Hachimori, Y, Ogura, K, Inagaki, F. | 登録日 | 2000-08-08 | 公開日 | 2001-08-08 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Novel recognition mode between Vav and Grb2 SH3 domains. EMBO J., 20, 2001
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1N9P
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![BU of 1n9p by Molmil](/molmil-images/mine/1n9p) | |
7Y00
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![BU of 7y00 by Molmil](/molmil-images/mine/7y00) | Cryo-EM structure of the nucleosome containing 169 base-pair DNA with a p53 target sequence | 分子名称: | DNA (169-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | 著者 | Nishimura, M, Nozawa, K, Takizawa, Y, Kurumizaka, H. | 登録日 | 2022-06-03 | 公開日 | 2022-10-19 | 最終更新日 | 2024-07-03 | 実験手法 | ELECTRON MICROSCOPY (3.96 Å) | 主引用文献 | Structural basis for p53 binding to its nucleosomal target DNA sequence. Pnas Nexus, 1, 2022
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