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PDB: 51630 件
7Y06
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Crystal structure of Ricin A chain bound with (S)-2-(2-amino-4-oxo-3,4-dihydropteridine-7-carboxamido)-4-phenylbutanoic acid
分子名称: (2S)-2-[(2-azanyl-4-oxidanylidene-3H-pteridin-7-yl)carbonylamino]-4-phenyl-butanoic acid, Ricin A chain, SULFATE ION
著者Goto, M, Higashi, S, Ohba, T, Kawata, R, Nagatsu, K, Suzuki, S, Saito, R.
登録日2022-06-03
公開日2022-12-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Conformational change in ricin toxin A-Chain: A critical factor for inhibitor binding to the secondary pocket.
Biochem.Biophys.Res.Commun., 627, 2022
7Y03
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Crystal structure of Ricin A chain bound with (S)-2-(2-amino-4-oxo-3,4-dihydropteridine-7-carboxamido)-2-phenylacetic acid
分子名称: (2S)-2-[(2-azanyl-4-oxidanylidene-3H-pteridin-7-yl)carbonylamino]-2-phenyl-ethanoic acid, Ricin A chain, SULFATE ION
著者Goto, M, Higashi, S, Ohba, T, Kawata, R, Nagatsu, K, Suzuki, S, Saito, R.
登録日2022-06-03
公開日2022-12-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Conformational change in ricin toxin A-Chain: A critical factor for inhibitor binding to the secondary pocket.
Biochem.Biophys.Res.Commun., 627, 2022
7Y07
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BU of 7y07 by Molmil
Crystal structure of Ricin A chain bound with (S)-2-amino-N-(1-hydroxy-3-phenylpropan-2-yl)-4-oxo-3,4-dihydropteridine-7-carboxamide
分子名称: 2-azanyl-4-oxidanylidene-N-[(2S)-1-oxidanyl-3-phenyl-propan-2-yl]-3H-pteridine-7-carboxamide, Ricin A chain, SULFATE ION
著者Goto, M, Higashi, S, Ohba, T, Kawata, R, Nagatsu, K, Suzuki, S, Saito, R.
登録日2022-06-03
公開日2022-12-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Conformational change in ricin toxin A-Chain: A critical factor for inhibitor binding to the secondary pocket.
Biochem.Biophys.Res.Commun., 627, 2022
7Y08
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Crystal structure of Ricin A chain bound with (2-amino-4-oxo-3,4-dihydropteridine-7-carbonyl)glycyl-L-phenylalanine
分子名称: N-[(2-amino-4-oxo-1,4-dihydropteridin-7-yl)carbonyl]glycyl-L-phenylalanine, Ricin A chain, SULFATE ION
著者Goto, M, Higashi, S, Ohba, T, Kawata, R, Nagatsu, K, Suzuki, S, Saito, R.
登録日2022-06-03
公開日2022-12-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Conformational change in ricin toxin A-Chain: A critical factor for inhibitor binding to the secondary pocket.
Biochem.Biophys.Res.Commun., 627, 2022
3B1X
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BU of 3b1x by Molmil
Crystal structure of an S. thermophilus NFeoB E66A mutant bound to GMPPNP
分子名称: Ferrous iron uptake transporter protein B, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
著者Ash, M.R, Maher, M.J, Guss, J.M, Jormakka, M.
登録日2011-07-15
公開日2011-11-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献A suite of Switch I and Switch II mutant structures from the G-protein domain of FeoB
Acta Crystallogr.,Sect.D, 67, 2011
3B4M
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Crystal Structure of Human PABPN1 RRM
分子名称: Polyadenylate-binding protein 2
著者Ge, H, Zhou, D, Teng, M, Niu, L.
登録日2007-10-24
公開日2008-01-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.82 Å)
主引用文献Crystal structure and possible dimerization of the single RRM of human PABPN1
Proteins, 71, 2008
3B0P
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tRNA-dihydrouridine synthase from Thermus thermophilus
分子名称: FLAVIN MONONUCLEOTIDE, tRNA-dihydrouridine synthase
著者Yu, F, Tanaka, Y, Yamashita, K, Nakamura, A, Yao, M, Tanaka, I.
登録日2011-06-12
公開日2011-12-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Molecular basis of dihydrouridine formation on tRNA
Proc.Natl.Acad.Sci.USA, 108, 2011
3B76
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Crystal structure of the third PDZ domain of human ligand-of-numb protein-X (LNX1) in complex with the C-terminal peptide from the coxsackievirus and adenovirus receptor
分子名称: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase LNX, SODIUM ION
著者Ugochukwu, E, Burgess-Brown, N, Berridge, G, Elkins, J, Bunkoczi, G, Pike, A.C.W, Sundstrom, M, Arrowsmith, C.H, Weigelt, J, Edwards, A.M, Gileadi, O, von Delft, F, Doyle, D, Structural Genomics Consortium (SGC)
登録日2007-10-30
公開日2007-11-13
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of the third PDZ domain of human ligand-of-numb protein-X (LNX1) in complex with the C-terminal peptide from the coxsackievirus and adenovirus receptor.
To be Published
7XSG
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Crystal structure of ClAgl29B
分子名称: Alpha-L-fucosidase, CITRIC ACID, DI(HYDROXYETHYL)ETHER, ...
著者Shishiuchi, R, Kang, H, Tagami, T, Okuyama, M.
登録日2022-05-14
公開日2023-01-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.609 Å)
主引用文献Discovery of alpha-l-Glucosidase Raises the Possibility of alpha-l-Glucosides in Nature.
Acs Omega, 7, 2022
7YIM
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BU of 7yim by Molmil
Cryo-EM structure of human Alpha-fetoprotein
分子名称: Alpha-fetoprotein
著者Liu, N, Liu, K, Wu, C, Liu, Z, Li, M, Wang, J, Wang, H.W.
登録日2022-07-17
公開日2023-01-18
最終更新日2023-01-25
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献Uniform thin ice on ultraflat graphene for high-resolution cryo-EM.
Nat.Methods, 20, 2023
7XSF
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Crystal structure of ClAgl29A
分子名称: Alpha-L-fucosidase, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Shishiuchi, R, Kang, H, Tagami, T, Okuyama, M.
登録日2022-05-14
公開日2023-01-18
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.006 Å)
主引用文献Discovery of alpha-l-Glucosidase Raises the Possibility of alpha-l-Glucosides in Nature.
Acs Omega, 7, 2022
7XSH
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Crystal structure of ClAgl29B bound with L-glucose
分子名称: Alpha-L-fucosidase, CITRIC ACID, DI(HYDROXYETHYL)ETHER, ...
著者Shishiuchi, R, Kang, H, Tagami, T, Okuyama, M.
登録日2022-05-14
公開日2023-01-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.708 Å)
主引用文献Discovery of alpha-l-Glucosidase Raises the Possibility of alpha-l-Glucosides in Nature.
Acs Omega, 7, 2022
3B6P
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Structure of TREX1 in complex with a nucleotide and inhibitor ions (sodium and zinc)
分子名称: SODIUM ION, THYMIDINE-5'-PHOSPHATE, Three prime repair exonuclease 1, ...
著者Brucet, M, Querol-Audi, J, Fita, I, Celada, A.
登録日2007-10-29
公開日2008-09-23
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural and biochemical studies of TREX1 inhibition by metals. Identification of a new active histidine conserved in DEDDh exonucleases.
Protein Sci., 17, 2008
7Y0Z
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BU of 7y0z by Molmil
Crystal structure of Pseudomonas aeruginosa PvrA
分子名称: TetR family transcriptional regulator
著者Liang, H, Zhang, Q, Bartlam, M.
登録日2022-06-06
公開日2023-02-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Regulatory and structural mechanisms of PvrA-mediated regulation of the PQS quorum-sensing system and PHA biosynthesis in Pseudomonas aeruginosa.
Nucleic Acids Res., 51, 2023
3BBR
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BU of 3bbr by Molmil
Crystal structure of the iGluR2 ligand binding core (S1S2J-N775S) in complex with a dimeric positive modulator as well as glutamate at 2.25 A resolution
分子名称: CHLORIDE ION, GLUTAMIC ACID, GLYCEROL, ...
著者Kastrup, J.S, Gajhede, M.
登録日2007-11-11
公開日2007-12-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structural proof of a dimeric positive modulator bridging two identical AMPA receptor-binding sites
Chem.Biol., 14, 2007
7VB6
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Crystal structure of hydroxynitrile lyase from Linum usitatissium complexed with (R)-2-hydroxy-2-methylbutanenitrile
分子名称: (2R)-2-methyl-2-oxidanyl-butanenitrile, 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
著者Zheng, D, Nakabayashi, M, Asano, Y.
登録日2021-08-30
公開日2022-02-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Structural characterization of Linum usitatissimum hydroxynitrile lyase: A new cyanohydrin decomposition mechanism involving a cyano-zinc complex.
J.Biol.Chem., 298, 2022
3BA7
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Crystal structure of L26N/D28A mutant of Human acidic fibroblast growth factor
分子名称: FORMIC ACID, Heparin-binding growth factor 1, SULFATE ION
著者Blaber, M, Lee, J.
登録日2007-11-07
公開日2008-04-15
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A logical OR redundancy within the Asx-Pro-Asx-Gly type I beta-turn motif.
J.Mol.Biol., 377, 2008
7VK2
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BU of 7vk2 by Molmil
Crystal Structure of SARS-CoV-2 Mpro at 2.0 A resolution -9
分子名称: 3C-like proteinase
著者DeMirci, H, Gul, M.
登録日2021-09-29
公開日2022-01-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Case Study of High-Throughput Drug Screening and Remote Data Collection for SARS-CoV-2 Main Protease by Using Serial Femtosecond X-ray Crystallography
Crystals, 11, 2021
7VB3
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BU of 7vb3 by Molmil
Crystal structure of hydroxynitrile lyase from Linum usitatissimum
分子名称: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Aliphatic (R)-hydroxynitrile lyase, ...
著者Zheng, D, Nakabayashi, M, Asano, Y.
登録日2021-08-30
公開日2022-02-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Structural characterization of Linum usitatissimum hydroxynitrile lyase: A new cyanohydrin decomposition mechanism involving a cyano-zinc complex.
J.Biol.Chem., 298, 2022
7VB5
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Crystal structure of hydroxynitrile lyase from Linum usitatissimum complexed with acetone cyanohydrin
分子名称: 1,2-ETHANEDIOL, 2-HYDROXY-2-METHYLPROPANENITRILE, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
著者Zheng, D, Nakabayashi, M, Asano, Y.
登録日2021-08-30
公開日2022-02-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Structural characterization of Linum usitatissimum hydroxynitrile lyase: A new cyanohydrin decomposition mechanism involving a cyano-zinc complex.
J.Biol.Chem., 298, 2022
3BC1
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BU of 3bc1 by Molmil
Crystal Structure of the complex Rab27a-Slp2a
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Ras-related protein Rab-27A, ...
著者Chavas, L.M.G, Ihara, K, Kawasaki, M, Wakatsuki, S.
登録日2007-11-12
公開日2008-09-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Elucidation of Rab27 recruitment by its effectors: structure of Rab27a bound to Exophilin4/Slp2-a
Structure, 16, 2008
7V9G
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Native BEN4 domain of protein Bend3 with DNA
分子名称: BEN domain-containing protein 3, DNA (5'-D(*GP*CP*AP*CP*CP*GP*CP*GP*TP*GP*GP*GP*GP*CP*CP*A)-3'), DNA (5'-D(*TP*GP*GP*CP*CP*CP*CP*AP*CP*GP*CP*GP*GP*TP*GP*C)-3')
著者Zhang, J, Zhang, Y, You, Q, Huang, C, Zhang, T, Wang, M, Zhang, T, Yang, X, Xiong, J, Li, Y, Liu, C.P, Zhang, Z, Xu, R.M, Zhu, B.
登録日2021-08-25
公開日2022-02-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Highly enriched BEND3 prevents the premature activation of bivalent genes during differentiation.
Science, 375, 2022
7V9I
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The Monomer mutant of BEN4 domain of protein Bend3 with DNA
分子名称: BEN domain-containing protein 3, DNA (5'-D(*AP*CP*CP*GP*CP*GP*TP*GP*GP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*CP*CP*AP*CP*GP*CP*GP*GP*T)-3')
著者Zhang, J, Zhang, Y, You, Q, Huang, C, Zhang, T, Wang, M, Zhang, T, Yang, X, Xiong, J, Li, Y, Liu, C.P, Zhang, Z, Xu, R.M, Zhu, B.
登録日2021-08-25
公開日2022-02-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Highly enriched BEND3 prevents the premature activation of bivalent genes during differentiation.
Science, 375, 2022
3BDU
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Crystal structure of protein Q6D8G1 at the resolution 1.9 A. Northeast Structural Genomics Consortium target EwR22A.
分子名称: Putative lipoprotein
著者Kuzin, A.P, Su, M, Seetharaman, J, Wang, D, Fang, Y, Cunningham, K, Owens, L, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2007-11-15
公開日2007-11-27
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of protein Q6D8G1 at the resolution 1.9 A.
To be Published
7V9H
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The BEN3 domain of protein Bend3
分子名称: BEN domain-containing protein 3
著者Zhang, J, Zhang, Y, You, Q, Huang, C, Zhang, T, Wang, M, Zhang, T, Yang, X, Xiong, J, Li, Y, Liu, C.P, Zhang, Z, Xu, R.M, Zhu, B.
登録日2021-08-25
公開日2022-02-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.692 Å)
主引用文献Highly enriched BEND3 prevents the premature activation of bivalent genes during differentiation.
Science, 375, 2022

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