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PDB: 1098 results

2A3C
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Crystal structure of Aspergillus fumigatus chitinase B1 in complex with pentoxifylline
Descriptor: 3,7-DIMETHYL-1-(5-OXOHEXYL)-3,7-DIHYDRO-1H-PURINE-2,6-DIONE, SULFATE ION, chitinase
Authors:Rao, F.V, Andersen, O.A, Vora, K.A, DeMartino, J.A, van Aalten, D.M.F.
Deposit date:2005-06-24
Release date:2005-09-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Methylxanthine drugs are chitinase inhibitors: investigation of inhibition and binding modes.
Chem.Biol., 12, 2005
2CBJ
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Structure of the Clostridium perfringens NagJ family 84 glycoside hydrolase, a homologue of human O-GlcNAcase in complex with PUGNAc
Descriptor: CHLORIDE ION, HYALURONIDASE, O-(2-ACETAMIDO-2-DEOXY D-GLUCOPYRANOSYLIDENE) AMINO-N-PHENYLCARBAMATE
Authors:Rao, F.V, Dorfmueller, H.C, Villa, F, Allwood, M, Eggleston, I.M, van Aalten, D.M.F.
Deposit date:2006-01-05
Release date:2006-02-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural insights into the mechanism and inhibition of eukaryotic O-GlcNAc hydrolysis.
EMBO J., 25, 2006
2CLO
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Tryptophan Synthase (external aldimine state) in complex with (naphthalene-2'-sulfonyl)-2-amino-1-ethylphosphate (F19)
Descriptor: 2-[(2-NAPHTHYLSULFONYL)AMINO]ETHYL DIHYDROGEN PHOSPHATE, SODIUM ION, TRYPTOPHAN SYNTHASE ALPHA CHAIN, ...
Authors:Ngo, H, Kimmich, N, Harris, R, Niks, D, Blumenstein, L, Kulik, V, Barends, T.R, Schlichting, I, Dunn, M.F.
Deposit date:2006-04-28
Release date:2007-06-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Allosteric Regulation of Substrate Channeling in Tryptophan Synthase: Modulation of the L-Serine Reaction in Stage I of the Beta-Reaction by Alpha-Site Ligands.
Biochemistry, 46, 2007
2CLM
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Tryptophan Synthase (external aldimine state) in complex with N-(4'- trifluoromethoxybenzoyl)-2-amino-1-ethylphosphate (F6F)
Descriptor: 2-{[4-(TRIFLUOROMETHOXY)BENZOYL]AMINO}ETHYL DIHYDROGEN PHOSPHATE, SODIUM ION, TRYPTOPHAN SYNTHASE ALPHA CHAIN, ...
Authors:Ngo, H, Kimmich, N, Harris, R, Niks, D, Blumenstein, L, Kulik, V, Barends, T.R, Schlichting, I, Dunn, M.F.
Deposit date:2006-04-28
Release date:2007-06-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Allosteric Regulation of Substrate Channeling in Tryptophan Synthase: Modulation of the L-Serine Reaction in Stage I of the Beta-Reaction by Alpha-Site Ligands.
Biochemistry, 46, 2007
1PFT
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N-TERMINAL DOMAIN OF TFIIB, NMR
Descriptor: TFIIB, ZINC ION
Authors:Zhu, W, Zeng, Q, Colangelo, C.M, Lewis, L.M, Summers, M.F, Scott, R.A.
Deposit date:1996-03-27
Release date:1996-08-17
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The N-terminal domain of TFIIB from Pyrococcus furiosus forms a zinc ribbon.
Nat.Struct.Biol., 3, 1996
456C
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CRYSTAL STRUCTURE OF COLLAGENASE-3 (MMP-13) COMPLEXED TO A DIPHENYL-ETHER SULPHONE BASED HYDROXAMIC ACID
Descriptor: 2-{4-[4-(4-CHLORO-PHENOXY)-BENZENESULFONYL]-TETRAHYDRO-PYRAN-4-YL}-N-HYDROXY-ACETAMIDE, CALCIUM ION, MMP-13, ...
Authors:Lovejoy, B, Welch, A, Carr, S, Luong, C, Broka, C, Hendricks, R.T, Campbell, J, Walker, K, Martin, R, Van Wart, H, Browner, M.F.
Deposit date:1998-08-06
Release date:1999-08-06
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of MMP-1 and -13 reveal the structural basis for selectivity of collagenase inhibitors.
Nat.Struct.Biol., 6, 1999
4AEH
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Crystal structure of the anti-AaHI Fab9C2 antibody
Descriptor: FAB ANTIBODY, HEAVY CHAIN, LIGHT CHAIN
Authors:Fabrichny, I.P, Mondielli, G, Conrod, S, Martin-Eauclaire, M.F, Bourne, Y, Marchot, P.
Deposit date:2012-01-10
Release date:2012-03-07
Last modified:2012-05-02
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Insights Into Antibody Sequestering and Neutralizing of Na+-Channel & [Alpha]-Type Modulator from Old-World Scorpion Venom
J.Biol.Chem., 287, 2012
1PI7
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Structure of the channel-forming trans-membrane domain of Virus protein "u" (Vpu) from HIV-1
Descriptor: VPU protein
Authors:Park, S.H, Mrse, A.A, Nevzorov, A.A, Mesleh, M.F, Oblatt-Montal, M, Montal, M, Opella, S.J.
Deposit date:2003-05-29
Release date:2003-11-11
Last modified:2024-05-22
Method:SOLID-STATE NMR
Cite:Three-dimensional structure of the channel-forming trans-membrane domain of virus protein "u" (Vpu) from HIV-1
J.Mol.Biol., 333, 2003
3FDR
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Crystal structure of TDRD2
Descriptor: Tudor and KH domain-containing protein
Authors:Amaya, M.F, Adams, M.A, Guo, Y, Li, Y, Kozieradzki, I, Edwards, A.M, Arrowsmith, C.H, Weigelt, J, Bountra, C, Bochkarev, A, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2008-11-26
Release date:2009-01-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Mouse Piwi interactome identifies binding mechanism of Tdrkh Tudor domain to arginine methylated Miwi
Proc.Natl.Acad.Sci.USA, 106, 2009
4BEX
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Structure of human Cofilin1
Descriptor: COFILIN-1
Authors:Klejnot, M, Gabrielsen, M, Cameron, J, Mleczak, A, Talapatra, S.K, Kozielski, F, Pannifer, A, Olson, M.F.
Deposit date:2013-03-12
Release date:2013-08-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Analysis of the Human Cofilin1 Structure Reveals Conformational Changes Required for Actin-Binding
Acta Crystallogr.,Sect.D, 69, 2013
3FFE
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Structure of Achromobactin Synthetase Protein D, (AcsD)
Descriptor: AcsD
Authors:McMahon, S.A, Liu, H, Carter, L, Oke, M, Johnson, K.A, Schmelz, S, Challis, G.L, White, M.F, Naismith, J.H, Scottish Structural Proteomics Facility (SSPF)
Deposit date:2008-12-03
Release date:2009-02-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:AcsD catalyzes enantioselective citrate desymmetrization in siderophore biosynthesis
Nat.Chem.Biol., 5, 2009
4BHL
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Crystal structure of Litopenaeus vannamei arginine kinase in binary complex with arginine
Descriptor: ARGININE, ARGININE KINASE, BETA-MERCAPTOETHANOL
Authors:Lopez-Zavala, A.A, Garcia-Orozco, K.D, Carrasco-Miranda, J.S, Hernandez-Flores, J.M, Sugich-Miranda, R, Velazquez-Contreras, E.F, Criscitiello, M.F, Brieba, L.G, Rudino-Pinera, E, Sotelo-Mundo, R.R.
Deposit date:2013-04-03
Release date:2013-09-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Shrimp Arginine Kinase in Binary Complex with Arginine-A Molecular View of the Phosphagen Precursor Binding to the Enzyme.
J.Bioenerg.Biomembr., 45, 2013
4BJU
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Genetic and structural validation of Aspergillus fumigatus N- acetylphosphoglucosamine mutase as an antifungal target
Descriptor: MAGNESIUM ION, N-ACETYLGLUCOSAMINE-PHOSPHATE MUTASE
Authors:Fang, W, Raimi, O.G, Hurtado Guerrero, R, van Aalten, D.M.F.
Deposit date:2013-04-19
Release date:2013-05-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Genetic and Structural Validation of Aspergillus Fumigatus N-Acetylphosphoglucosamine Mutase as an Antifungal Target.
Biosci.Rep, 33, 2013
4B8T
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RNA BINDING PROTEIN Solution structure of the third KH domain of KSRP in complex with the G-rich target sequence.
Descriptor: 5'-R(*AP*GP*GP*GP*UP)-3', KH-TYPE SPLICING REGULATORY PROTEIN
Authors:Nicastro, G, Garcia-Mayoral, M.F, Hollingworth, D, Kelly, G, Martin, S.R, Briata, P, Gherzi, R, Ramos, A.
Deposit date:2012-08-30
Release date:2012-11-07
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Noncanonical G Recognition Mediates Ksrp Regulation of Let-7 Biogenesis
Nat.Struct.Mol.Biol., 19, 2012
1OKZ
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Structure of human PDK1 kinase domain in complex with UCN-01
Descriptor: 3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE 1, 7-HYDROXYSTAUROSPORINE, GLYCEROL, ...
Authors:Komander, D, Kular, G.S, Alessi, D.R, Van Aalten, D.M.F.
Deposit date:2003-08-01
Release date:2004-07-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structural Basis for Ucn-01 (7-Hydroxystaurosporine) Specificity and Pdk1 (3-Phosphoinositide-Dependent Protein Kinase-1) Inhibition
Biochem.J., 375, 2003
1OKY
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Structure of human PDK1 kinase domain in complex with staurosporine
Descriptor: 3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE 1, GLYCEROL, STAUROSPORINE, ...
Authors:Komander, D, Kular, G.S, Alessi, D.R, Van Aalten, D.M.F.
Deposit date:2003-08-01
Release date:2004-07-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis for Ucn-01 (7-Hydroxystaurosporine) Specificity and Pdk1 (3-Phosphoinositide-Dependent Protein Kinase-1) Inhibition
Biochem.J., 375, 2003
4BOJ
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Crystal structure of Bacillus circulans TN-31 Aman6 in complex with mannobiose
Descriptor: ALPHA-1,6-MANNANASE, alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose
Authors:Striebeck, A, van Aalten, D.M.F.
Deposit date:2013-05-21
Release date:2014-05-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.379 Å)
Cite:The Structure of B. Circulans Aman6 Defines the Fold and Mechanism of the Gh-76 Mannoprotein Transglycosylases and Bacterial Mannosidases
To be Published
1OGB
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Chitinase b from Serratia marcescens mutant D142N
Descriptor: CHITINASE B, GLYCEROL, SULFATE ION
Authors:Vaaje-Kolstad, G, Houston, D.R, Rao, F.V, Peter, M.G, Synstad, B, van Aalten, D.M.F, Eijsink, V.G.H.
Deposit date:2003-04-29
Release date:2004-04-27
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of the D142N Mutant of the Family 18 Chitinase Chib from Serratia Marcescens and its Complex with Allosamidin
Biochim.Biophys.Acta, 1696, 2004
4BV4
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Structure and allostery in Toll-Spatzle recognition
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, PROTEIN SPAETZLE C-106, PROTEIN TOLL, ...
Authors:Lewis, M.F, Arnot, C.J, Beeston, H, McCoy, A, Ashcroft, A.E, Gay, N.J, Gangloff, M.
Deposit date:2013-06-24
Release date:2013-12-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Cytokine Spatzle Binds to the Drosophila Immunoreceptor Toll with a Neurotrophin-Like Specificity and Couples Receptor Activation.
Proc.Natl.Acad.Sci.USA, 110, 2013
1QRJ
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Solution structure of htlv-i capsid protein
Descriptor: HTLV-I CAPSID PROTEIN
Authors:Khorasanizadeh, S, Campos-Olivas, R, Clark, C.A, Summers, M.F.
Deposit date:1999-06-14
Release date:1999-07-13
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Sequence-specific 1H, 13C and 15N chemical shift assignment and secondary structure of the HTLV-I capsid protein.
J.Biomol.NMR, 14, 1999
1QI9
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X-RAY SIRAS STRUCTURE DETERMINATION OF A VANADIUM-DEPENDENT HALOPEROXIDASE FROM ASCOPHYLLUM NODOSUM AT 2.0 A RESOLUTION
Descriptor: VANADATE ION, Vanadium-dependent bromoperoxidase
Authors:Weyand, M, Hecht, H.-J, Kiess, M, Liaud, M.F, Vilter, H, Schomburg, D.
Deposit date:1999-06-10
Release date:2000-06-10
Last modified:2023-06-07
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:X-ray structure determination of a vanadium-dependent haloperoxidase from Ascophyllum nodosum at 2.0 A resolution.
J.Mol.Biol., 293, 1999
4C3W
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Vanadium(IV)-Picolinate Complexed with Lysozyme
Descriptor: ACETATE ION, CHLORIDE ION, LYSOZYME C, ...
Authors:Santos, M.F.A, Correia, I, Oliveira, A.R, Garribba, E, Pessoa, J.C, Romao, M.J, Santos-Silva, T.
Deposit date:2013-08-28
Release date:2014-07-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Vanadium Complexes as Prospective Therapeutics: Structural Characterization of a V(Iv) Lysozyme Adduct
Eur.J.Inorg.Chem., 21, 2014
3HHT
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A mutant of the nitrile hydratase from Geobacillus pallidus having enhanced thermostability
Descriptor: CHLORIDE ION, COBALT (III) ION, Nitrile hydratase alpha subunit, ...
Authors:Van Wyk, J.C, Sewell, B.T, Cowan, D.A, Sayed, M.F, Tsekoa, T.L, Tastan Bishop, A.O.
Deposit date:2009-05-17
Release date:2009-07-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:The high-resolution structure of a Cobalt containing nitrile hydratase
To be published
4BMA
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structural of Aspergillus fumigatus UDP-N-acetylglucosamine pyrophosphorylase
Descriptor: GLYCEROL, UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE
Authors:Fang, W, Raimi, O.G, HurtadoGuerrero, R, vanAalten, D.M.F.
Deposit date:2013-05-07
Release date:2013-05-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Genetic and Structural Validation of Aspergillus Fumigatus Udp-N-Acetylglucosamine Pyrophosphorylase as an Antifungal Target.
Mol.Microbiol., 89, 2013
1QL1
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INOVIRUS (FILAMENTOUS BACTERIOPHAGE) STRAIN PF1 MAJOR COAT PROTEIN ASSEMBLY
Descriptor: PF1 BACTERIOPHAGE COAT PROTEIN B
Authors:Welsh, L.C, Symmons, M.F, Marvin, D.A.
Deposit date:1999-08-20
Release date:2000-02-07
Last modified:2023-12-13
Method:FIBER DIFFRACTION (3.1 Å)
Cite:The Molecular Structure and Structural Transition of the Alpha-Helical Capsid in Filamentous Bacteriophage Pf1
Acta Crystallogr.,Sect.D, 56, 2000

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