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PDB: 5628 results

3TMA
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Crystal structure of TrmN from Thermus thermophilus
Descriptor: PHOSPHATE ION, methyltransferase
Authors:Fislage, M, Roovers, M, Tuszynska, I, Bujnicki, J.M, Droogmans, L, Versees, W.
Deposit date:2011-08-31
Release date:2012-03-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structures of the tRNA:m2G6 methyltransferase Trm14/TrmN from two domains of life.
Nucleic Acids Res., 40, 2012
2PNW
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BU of 2pnw by Molmil
Crystal structure of membrane-bound lytic murein transglycosylase from Agrobacterium tumefaciens
Descriptor: Membrane-bound lytic murein transglycosylase, SULFATE ION
Authors:Bonanno, J.B, Dickey, M, Bain, K.T, Iizuka, M, Ozyurt, S, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-04-25
Release date:2007-05-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of membrane-bound lytic murein transglycosylase from Agrobacterium tumefaciens.
To be Published
1Z5C
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Topoisomerase VI-B, ADP Pi bound dimer form
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Corbett, K.D, Berger, J.M.
Deposit date:2005-03-17
Release date:2005-06-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural dissection of ATP turnover in the prototypical GHL ATPase TopoVI.
Structure, 13, 2005
1Z71
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thrombin and P2 pyridine N-oxide inhibitor complex structure
Descriptor: Hirudin IIIB', L17, thrombin
Authors:Nantermet, P.G, Burgey, C.S, Robinson, K.A, Pellicore, J.M, Newton, C.L, Deng, J.Z, Lyle, T.A, Selnick, H.G, Lewis, S.D, Lucas, B.J, Krueger, J.A, Miller-Stein, C, White, R.B, Wong, B, McMasters, D.R, Wallace, A.A, Lynch Jr, J.J, Yan, Y, Chen, Z, Kuo, L, Gardell, S.J, Shafer, J.A, Vacca, J.P.
Deposit date:2005-03-23
Release date:2005-05-17
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:P(2) pyridine N-oxide thrombin inhibitors: a novel peptidomimetic scaffold
BIOORG.MED.CHEM.LETT., 15, 2005
1Z79
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Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5)
Descriptor: CALCIUM ION, RNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'
Authors:Gherghe, C.M, Krahn, J.M, Weeks, K.M.
Deposit date:2005-03-24
Release date:2005-10-18
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structures, reactivity and inferred acylation transition States for 2'-amine substituted RNA.
J.Am.Chem.Soc., 127, 2005
2Q2E
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BU of 2q2e by Molmil
Crystal structure of the topoisomerase VI holoenzyme from Methanosarcina mazei
Descriptor: Type 2 DNA topoisomerase 6 subunit B, Type II DNA topoisomerase VI subunit A
Authors:Corbett, K.D, Benedetti, P, Berger, J.M.
Deposit date:2007-05-28
Release date:2007-07-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (4 Å)
Cite:Holoenzyme assembly and ATP-mediated conformational dynamics of topoisomerase VI
Nat.Struct.Mol.Biol., 14, 2007
1YY0
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Crystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatch
Descriptor: 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3', 5'-R(*GP*CP*AP*GP*AP*(M5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3', CALCIUM ION
Authors:Gherghe, C.M, Krahn, J.M, Weeks, K.M.
Deposit date:2005-02-23
Release date:2005-10-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structures, reactivity and inferred acylation transition States for 2'-amine substituted RNA.
J.Am.Chem.Soc., 127, 2005
1Z7Y
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Crystal Structure of the Arabidopsis thaliana O-Acetylserine Sulfhydrylase K46A mutant
Descriptor: Cysteine synthase, N-[(3-HYDROXY-2-METHYL-5-{[(TRIHYDROXYPHOSPHORANYL)OXY]METHYL}PYRIDIN-4-YL)METHYLENE]METHIONINE
Authors:Bonner, E.R, Cahoon, R.E, Knapke, S.M, Jez, J.M.
Deposit date:2005-03-28
Release date:2005-09-20
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular Basis of Cysteine Biosynthesis in Plants: STRUCTURAL AND FUNCTIONAL ANALYSIS OF O-ACETYLSERINE SULFHYDRYLASE FROM ARABIDOPSIS THALIANA.
J.Biol.Chem., 280, 2005
3TSY
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BU of 3tsy by Molmil
4-Coumaroyl-CoA Ligase::Stilbene Synthase fusion protein
Descriptor: Fusion Protein 4-coumarate--CoA ligase 1, Resveratrol synthase
Authors:Yi, H, Jez, J.M.
Deposit date:2011-09-13
Release date:2011-12-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural and Kinetic Analysis of the Unnatural Fusion Protein 4-Coumaroyl-CoA Ligase::Stilbene Synthase.
J.Am.Chem.Soc., 133, 2011
2QEB
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Crystal Structure of Anopheles Gambiae D7R4-Histamine Complex
Descriptor: D7R4 Protein, GLYCEROL, HISTAMINE
Authors:Andersen, J.F, Mans, B.J, Calvo, E, Ribeiro, J.M.
Deposit date:2007-06-25
Release date:2007-10-09
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.003 Å)
Cite:The Crystal Structure of D7r4, a Salivary Biogenic Amine-binding Protein from the Malaria Mosquito Anopheles gambiae
J.Biol.Chem., 282, 2007
2A8H
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BU of 2a8h by Molmil
Crystal structure of catalytic domain of TACE with Thiomorpholine Sulfonamide Hydroxamate inhibitor
Descriptor: 4-({4-[(4-AMINOBUT-2-YNYL)OXY]PHENYL}SULFONYL)-N-HYDROXY-2,2-DIMETHYLTHIOMORPHOLINE-3-CARBOXAMIDE, ADAM 17, ZINC ION
Authors:Levin, J.I, Chen, J.M, Laakso, L.M, Du, M, Schmid, J, Xu, W, Cummons, T, Xu, J, Jin, G, Barone, D, Skotnicki, J.S.
Deposit date:2005-07-08
Release date:2006-02-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Acetylenic TACE inhibitors. Part 3: Thiomorpholine sulfonamide hydroxamates.
Bioorg.Med.Chem.Lett., 16, 2006
3TY4
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BU of 3ty4 by Molmil
Crystal structure of homoisocitrate dehydrogenase from Schizosaccharomyces pombe
Descriptor: GLYCEROL, Probable homoisocitrate dehydrogenase
Authors:Bulfer, S.L, Hendershot, J.M, Trievel, R.C.
Deposit date:2011-09-23
Release date:2011-11-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of homoisocitrate dehydrogenase from Schizosaccharomyces pombe.
Proteins, 80, 2012
2A8V
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BU of 2a8v by Molmil
RHO TRANSCRIPTION TERMINATION FACTOR/RNA COMPLEX
Descriptor: 5'-R(P*CP*CP*C)-3', 5'-R(P*CP*CP*CP*CP*CP*C)-3', RNA BINDING DOMAIN OF RHO TRANSCRIPTION TERMINATION FACTOR
Authors:Bogden, C.E, Fass, D, Bergman, N, Nichols, M.D, Berger, J.M.
Deposit date:1998-11-08
Release date:1999-04-26
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The structural basis for terminator recognition by the Rho transcription termination factor.
Mol.Cell, 3, 1999
2AB5
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bI3 LAGLIDADG Maturase
Descriptor: SULFATE ION, mRNA maturase
Authors:Longo, A, Leonard, C.W, Bassi, G.S, Berndt, D, Krahn, J.M, Hall, T.M, Weeks, K.M.
Deposit date:2005-07-14
Release date:2005-08-30
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Evolution from DNA to RNA recognition by the bI3 LAGLIDADG maturase
Nat.Struct.Mol.Biol., 12, 2005
3UA7
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BU of 3ua7 by Molmil
Crystal Structure of the Human Fyn SH3 domain in complex with a peptide from the Hepatitis C virus NS5A-protein
Descriptor: CHLORIDE ION, FORMIC ACID, GLYCEROL, ...
Authors:Martin-Garcia, J.M, Ruiz-Sanz, J, Luque, I, Camara-Artigas, A.
Deposit date:2011-10-21
Release date:2012-07-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The promiscuous binding of the Fyn SH3 domain to a peptide from the NS5A protein.
Acta Crystallogr.,Sect.D, 68, 2012
1ZXQ
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THE CRYSTAL STRUCTURE OF ICAM-2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, INTERCELLULAR ADHESION MOLECULE-2
Authors:Casasnovas, J.M, Springer, T.A, Harrison, S.C, Wang, J.-H.
Deposit date:1997-03-04
Release date:1997-09-04
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of ICAM-2 reveals a distinctive integrin recognition surface.
Nature, 387, 1997
2QYA
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Crystal structure of an uncharacterized conserved protein from Methanopyrus kandleri
Descriptor: Uncharacterized conserved protein
Authors:Bonanno, J.B, Zhang, A, Bain, K.T, Adams, J, Ozyurt, S, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-08-14
Release date:2007-08-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Crystal structure of an uncharacterized conserved protein from Methanopyrus kandleri.
To be Published
1AQT
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EPSILON SUBUNIT OF F1F0-ATP SYNTHASE FROM ESCHERICHIA COLI
Descriptor: ATP SYNTHASE
Authors:Uhlin, U, Guss, J.M.
Deposit date:1997-07-31
Release date:1998-02-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the epsilon subunit of the proton-translocating ATP synthase from Escherichia coli.
Structure, 5, 1997
2QEV
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BU of 2qev by Molmil
Crystal Structure of Anopheles gambiae D7r4
Descriptor: D7R4 Protein
Authors:Andersen, J.F, Mans, B.J, Calvo, E, Ribeiro, J.M.
Deposit date:2007-06-26
Release date:2007-10-09
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.998 Å)
Cite:The Crystal Structure of D7r4, a Salivary Biogenic Amine-binding Protein from the Malaria Mosquito Anopheles gambiae
J.Biol.Chem., 282, 2007
3TO1
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BU of 3to1 by Molmil
Two surfaces on Rtt106 mediate histone binding and chaperone activity
Descriptor: Histone chaperone RTT106
Authors:Zunder, R.M, Antczak, A.J, Berger, J.M, Rine, J.
Deposit date:2011-09-02
Release date:2011-12-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Two surfaces on the histone chaperone Rtt106 mediate histone binding, replication, and silencing.
Proc.Natl.Acad.Sci.USA, 109, 2012
3BOI
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BU of 3boi by Molmil
Snow Flea Antifreeze Protein Racemate
Descriptor: 6.5 kDa glycine-rich antifreeze protein
Authors:Pentelute, B.L, Kent, S.B.H, Gates, Z.P, Tereshko, V, Kossiakoff, A.A, Kurutz, J, Dashnau, J, Vaderkooi, J.M.
Deposit date:2007-12-17
Release date:2008-09-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1 Å)
Cite:X-ray structure of snow flea antifreeze protein determined by racemic crystallization of synthetic protein enantiomers
J.Am.Chem.Soc., 130, 2008
2QEE
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Crystal structure of putative amidohydrolase BH0493 from Bacillus halodurans C-125
Descriptor: BH0493 protein, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Malashkevich, V.N, Toro, R, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-06-25
Release date:2007-07-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of putative amidohydrolase BH0493 from Bacillus halodurans C-125.
To be Published
2QMT
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Crystal Polymorphism of Protein GB1 Examined by Solid-state NMR and X-ray Diffraction
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, ISOPROPYL ALCOHOL, Immunoglobulin G-binding protein G, ...
Authors:Frericks Schmidt, H.L, Sperling, L.J, Gao, Y.G, Wylie, B.J, Boettcher, J.M, Wilson, S.R, Rienstra, C.M.
Deposit date:2007-07-16
Release date:2007-12-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Crystal Polymorphism of Protein GB1 Examined by Solid-State NMR Spectroscopy and X-ray Diffraction.
J.Phys.Chem.B, 111, 2007
3STD
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BU of 3std by Molmil
SCYTALONE DEHYDRATASE AND CYANOCINNOLINE INHIBITOR
Descriptor: 4-(3,3-diphenylpropylamino)cinnoline-3-carbonitrile, CALCIUM ION, PROTEIN (SCYTALONE DEHYDRATASE)
Authors:Chen, J.M, Xu, S.L, Wawrzak, Z, Basarab, G.S, Jordan, D.B.
Deposit date:1998-10-16
Release date:1999-10-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure-based design of potent inhibitors of scytalone dehydratase: displacement of a water molecule from the active site.
Biochemistry, 37, 1998
2AAN
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Auracyanin A: A "blue" copper protein from the green thermophilic photosynthetic bacterium,chloroflexus aurantiacus
Descriptor: COPPER (II) ION, SULFATE ION, auracyanin A
Authors:Lee, M, Guss, J.M, Freeman, H.C.
Deposit date:2005-07-13
Release date:2006-07-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The Crystal Structure of Auracyanin A at 1.85 A Resolution: Why the Photosynthetic Bacterium Chloroflexus Needs Two Almost Identical 'Blue' Copper Proteins
to be published

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