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PDB: 5628 件

8T4O
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Human mitochondrial serine hydroxymethyltransferase (SHMT2) in complex with PLP, glycine and AGF347 inhibitor with no glutamate
分子名称: 4-[4-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluorobenzoic acid, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE], Serine hydroxymethyltransferase, ...
著者Katinas, J.M, Dann III, C.E.
登録日2023-06-09
公開日2024-02-21
実験手法X-RAY DIFFRACTION (2.68 Å)
主引用文献Structural Characterization of 5-Substituted Pyrrolo[3,2- d ]pyrimidine Antifolate Inhibitors in Complex with Human Serine Hydroxymethyl Transferase 2.
Biochemistry, 2024
8T4P
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Human mitochondrial serine hydroxymethyltransferase (SHMT2) in complex with PLP, glycine and di-glutamate AGF347 inhibitor
分子名称: N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE], N-{4-[4-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluorobenzoyl}-L-gamma-glutamyl-L-glutamic acid, Serine hydroxymethyltransferase, ...
著者Katinas, J.M, Dann III, C.E.
登録日2023-06-09
公開日2024-02-21
実験手法X-RAY DIFFRACTION (2.801 Å)
主引用文献Structural Characterization of 5-Substituted Pyrrolo[3,2- d ]pyrimidine Antifolate Inhibitors in Complex with Human Serine Hydroxymethyl Transferase 2.
Biochemistry, 2024
8TLC
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Human mitochondrial serine hydroxymethyltransferase (SHMT2) in complex with PLP, glycine and tri-glutamate AGF347 inhibitor
分子名称: N-{4-[4-(2-amino-4-oxo-1,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluorobenzoyl}-D-gamma-glutamyl-L-gamma-glutamyl-D-glutamic acid, Serine hydroxymethyltransferase, mitochondrial
著者Katinas, J.M, Dann III, C.E.
登録日2023-07-26
公開日2024-02-21
実験手法X-RAY DIFFRACTION (2.72 Å)
主引用文献Structural Characterization of 5-Substituted Pyrrolo[3,2- d ]pyrimidine Antifolate Inhibitors in Complex with Human Serine Hydroxymethyl Transferase 2.
Biochemistry, 2024
6X2R
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Crystal Structure of the 4E-TNES peptide bound to CRM1
分子名称: Eukaryotic translation initiation factor 4E transporter, Exportin-1, GLYCEROL, ...
著者Baumhardt, J.M.
登録日2020-05-20
公開日2020-07-01
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.299 Å)
主引用文献Recognition of nuclear export signals by CRM1 carrying the oncogenic E571K mutation.
Mol.Biol.Cell, 31, 2020
6RIO
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Imidazole Polyamide-DNA complex NMR structure (5'-CGATGTACATCG-3')
分子名称: 3-[3-[[4-[[4-[[4-[[4-[[(2~{R})-2-azaniumyl-4-[[1-methyl-4-[[1-methyl-4-[[1-methyl-4-[(1-methylimidazol-2-yl)carbonylamino]pyrrol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]butanoyl]amino]-1-methyl-imidazol-2-yl]carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]propanoylamino]propyl-dimethyl-azanium, DNA (5'-(*(DC5)P*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*(DG3))-3')
著者Padroni, G, Withers, J.M, Taladriz-Sender, A, Reichenbach, L.F, Parkinson, J.A, Burley, G.A.
登録日2019-04-24
公開日2019-06-12
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Sequence-Selective Minor Groove Recognition of a DNA Duplex Containing Synthetic Genetic Components.
J.Am.Chem.Soc., 141, 2019
6WG5
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Human ectonucleoside triphosphate diphosphohydrolase 4 (ENTPD4, NTPDase 4)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ectonucleoside triphosphate diphosphohydrolase 4
著者Gorelik, A, Labriola, J.M, Illes, K, Nagar, B.
登録日2020-04-04
公開日2020-08-12
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of the nucleotide-metabolizing enzyme NTPDase4.
Protein Sci., 29, 2020
8RJL
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Structure of a first order Sierpinski triangle formed by the H369R mutant of the citrate synthase from Synechococcus elongatus
分子名称: Citrate synthase
著者Lo, Y.K, Bohn, S, Sendker, F.L, Schuller, J.M, Hochberg, G.
登録日2023-12-21
公開日2024-02-28
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (3.34 Å)
主引用文献Emergence of fractal geometries in the evolution of a metabolic enzyme.
Nature, 628, 2024
8RJK
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Pseudoatomic model of a second-order Sierpinski triangle formed by the citrate synthase from Synechococcus elongatus
分子名称: Citrate synthase
著者Lo, Y.K, Bohn, S, Sendker, F.L, Schuller, J.M, Hochberg, G.
登録日2023-12-21
公開日2024-02-28
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (5.91 Å)
主引用文献Emergence of fractal geometries in the evolution of a metabolic enzyme.
Nature, 628, 2024
6U7E
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HCoV-229E RBD Class III in complex with human APN
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Aminopeptidase N, ...
著者Tomlinson, A.C.A, Li, Z, Rini, J.M.
登録日2019-09-02
公開日2019-11-13
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献The human coronavirus HCoV-229E S-protein structure and receptor binding.
Elife, 8, 2019
8QF4
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Complex between N-lobe of Arc and nanobody H11
分子名称: Activity-regulated cytoskeleton-associated protein, Nanobody H11, PHOSPHATE ION
著者Godoy Munoz, J.M, Kursula, P.
登録日2023-09-02
公開日2024-03-13
実験手法X-RAY DIFFRACTION (1.02 Å)
主引用文献Complex between Arc N-lobe and nanobody H11
To Be Published
6U8E
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Human IMPDH2 treated with ATP, IMP, and NAD+. Filament assembly interface reconstruction.
分子名称: INOSINIC ACID, Inosine-5'-monophosphate dehydrogenase 2, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Johnson, M.C, Kollman, J.M.
登録日2019-09-04
公開日2020-03-25
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.03 Å)
主引用文献Cryo-EM structures demonstrate human IMPDH2 filament assembly tunes allosteric regulation.
Elife, 9, 2020
8QO2
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Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes
分子名称: OC43-CoV-SL5
著者Moura, T.R, Purta, E, Bernat, A, Baulin, E, Mukherjee, S, Bujnicki, J.M.
登録日2023-09-27
公開日2024-03-06
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (7.1 Å)
主引用文献Conserved structures and dynamics in 5'-proximal regions of Betacoronavirus RNA genomes.
Nucleic Acids Res., 52, 2024
6UDO
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BU of 6udo by Molmil
Human IMPDH2 treated with ATP, IMP, and 20 mM GTP. Fully compressed filament segment reconstruction.
分子名称: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, INOSINIC ACID, ...
著者Johnson, M.C, Kollman, J.M.
登録日2019-09-19
公開日2020-03-25
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.21 Å)
主引用文献Cryo-EM structures demonstrate human IMPDH2 filament assembly tunes allosteric regulation.
Elife, 9, 2020
6X2S
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BU of 6x2s by Molmil
Crystal Structure of Mek1(NQ)NES peptide bound to CRM
分子名称: Dual specificity mitogen-activated protein kinase kinase 1, Exportin-1, GLYCEROL, ...
著者Baumhardt, J.M.
登録日2020-05-20
公開日2020-07-01
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.496 Å)
主引用文献Recognition of nuclear export signals by CRM1 carrying the oncogenic E571K mutation.
Mol.Biol.Cell, 31, 2020
6X2M
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BU of 6x2m by Molmil
Crystal Structure of unliganded CRM1-Ran-RanBP1
分子名称: Exportin-1, GLYCEROL, GTP-binding nuclear protein Ran, ...
著者Baumhardt, J.M.
登録日2020-05-20
公開日2020-07-01
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.351 Å)
主引用文献Recognition of nuclear export signals by CRM1 carrying the oncogenic E571K mutation.
Mol.Biol.Cell, 31, 2020
6W1H
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BU of 6w1h by Molmil
Crystal structure of the hydroxyglutarate synthase in complex with 2-oxoadipate from Pseudomonas putida
分子名称: 2-OXOADIPIC ACID, Hydroxyglutarate synthase, NICKEL (II) ION
著者Pereira, J.H, Thompson, M.G, Blake-Hedges, J.M, Keasling, J.D, Adams, P.D.
登録日2020-03-04
公開日2020-06-24
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献An iron (II) dependent oxygenase performs the last missing step of plant lysine catabolism.
Nat Commun, 11, 2020
6W1R
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RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.23 Angstrom resolution
分子名称: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
著者Ibrahim, M, Fransson, T, Chatterjee, R, Cheah, M.H, Hussein, R, Lassalle, L, Sutherlin, K.D, Young, I.D, Fuller, F.D, Gul, S, Kim, I.-S, Simon, P.S, de Lichtenberg, C, Chernev, P, Bogacz, I, Pham, C, Orville, A.M, Saichek, N, Northen, T.R, Batyuk, A, Carbajo, S, Alonso-Mori, R, Tono, K, Owada, S, Bhowmick, A, Bolotovski, R, Mendez, D, Moriarty, N.W, Holton, J.M, Dobbek, H, Brewster, A.S, Adams, P.D, Sauter, N.K, Bergmann, U, Zouni, A, Messinger, J, Kern, J, Yachandra, V.K, Yano, J.
登録日2020-03-04
公開日2020-05-13
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献Untangling the sequence of events during the S2→ S3transition in photosystem II and implications for the water oxidation mechanism.
Proc.Natl.Acad.Sci.USA, 117, 2020
6VKO
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Crystal Structure of human PARP-1 CAT domain bound to inhibitor UKTT15
分子名称: Poly [ADP-ribose] polymerase 1, SULFATE ION, methyl 2-{4-[4-(7-carbamoyl-1H-benzimidazol-2-yl)benzene-1-carbonyl]piperazin-1-yl}pyrimidine-5-carboxylate
著者Langelier, M.F, Pascal, J.M.
登録日2020-01-21
公開日2020-06-17
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural basis for allosteric PARP-1 retention on DNA breaks.
Science, 368, 2020
6UDP
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Human IMPDH2 treated with ATP, IMP, and 20 mM GTP. Filament assembly interface reconstruction.
分子名称: INOSINIC ACID, Inosine-5'-monophosphate dehydrogenase 2
著者Johnson, M.C, Kollman, J.M.
登録日2019-09-19
公開日2020-03-25
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (2.95 Å)
主引用文献Cryo-EM structures demonstrate human IMPDH2 filament assembly tunes allosteric regulation.
Elife, 9, 2020
6RVM
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BU of 6rvm by Molmil
Cell division protein FtsZ from Staphylococcus aureus, apo form
分子名称: CHLORIDE ION, Cell division protein FtsZ, GLYCEROL, ...
著者Fernandez-Tornero, C, Andreu, J.M, Canosa-Valls, A.J.
登録日2019-05-31
公開日2020-02-19
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.155 Å)
主引用文献Nucleotide-induced folding of cell division protein FtsZ from Staphylococcus aureus.
Febs J., 287, 2020
8TRM
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BU of 8trm by Molmil
Actin 1 from T. gondii in filaments bound to MgADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin, MAGNESIUM ION
著者Hvorecny, K.L, Sladewski, T.E, Heaslip, A.T, Kollman, J.M.
登録日2023-08-09
公開日2024-03-06
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献Toxoplasma gondii actin filaments are tuned for rapid disassembly and turnover.
Nat Commun, 15, 2024
8TRN
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BU of 8trn by Molmil
Actin 1 from T. gondii in filaments bound to MgADP and jasplakinolide
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin, Jasplakinolide, ...
著者Hvorecny, K.L, Sladewski, T.E, Heaslip, A.T, Kollman, J.M.
登録日2023-08-09
公開日2024-03-06
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Toxoplasma gondii actin filaments are tuned for rapid disassembly and turnover.
Nat Commun, 15, 2024
6WFV
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The crystal structure of a collagen galactosylhydroxylysyl glucosyltransferase from human
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, MANGANESE (II) ION, ...
著者Guo, H.-F, Tsai, C.-L, Miller, M.D, Phillips Jr, G.N, Tainer, J.A, Kurie, J.M.
登録日2020-04-04
公開日2021-04-14
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The crystal structure of a collagen galactosylhydroxylysyl glucosyltransferase from human
To Be Published
6WJL
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Crystal structure of Glypican-2 core protein in complex with D3 Fab
分子名称: D3 Fab Heavy chain, D3 Fab Light Chain, Glypican-2, ...
著者Raman, S, Maris, J.M, Bosse, K.R, Julien, J.P.
登録日2020-04-14
公開日2021-04-21
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献A GPC2 antibody-drug conjugate is efficacious against neuroblastoma and small-cell lung cancer via binding a conformational epitope.
Cell Rep Med, 2, 2021
8TCE
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Lipoprotein(a) Kringle IV domain 8 - Lp(a) KIV8 in complex with LY3353871
分子名称: (2S)-3-phenyl-2-[(3R)-pyrrolidin-3-yl]propanoic acid, Apolipoprotein(a)
著者Hendle, J, Weichert, K, Sauder, J.M.
登録日2023-06-30
公開日2024-05-08
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.07 Å)
主引用文献Discovery of potent small-molecule inhibitors of lipoprotein(a) formation.
Nature, 629, 2024

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件を2024-08-28に公開中

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