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PDB: 5628 results

2NQL
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Crystal structure of a member of the enolase superfamily from Agrobacterium tumefaciens
Descriptor: GLYCEROL, Isomerase/lactonizing enzyme, SODIUM ION, ...
Authors:Patskovsky, Y, Ramagopal, U, Toro, R, Sauder, J.M, Dickey, M, Adams, J.M, Ozyurt, S, Wasserman, S.R, Gerlt, J, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2006-10-31
Release date:2006-11-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Enolase from Agrobacterium Tumefaciens C58
To be Published
1GIB
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MU-CONOTOXIN GIIIB, NMR
Descriptor: MU-CONOTOXIN GIIIB
Authors:Hill, J.M, Alewood, P.F, Craik, D.J.
Deposit date:1996-04-17
Release date:1996-11-08
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of mu-conotoxin GIIIB, a specific blocker of skeletal muscle sodium channels.
Biochemistry, 35, 1996
1A30
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HIV-1 PROTEASE COMPLEXED WITH A TRIPEPTIDE INHIBITOR
Descriptor: HIV-1 PROTEASE, TRIPEPTIDE GLU-ASP-LEU
Authors:Louis, J.M, Dyda, F, Nashed, N.T, Kimmel, A.R, Davies, D.R.
Deposit date:1998-01-27
Release date:1998-04-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Hydrophilic peptides derived from the transframe region of Gag-Pol inhibit the HIV-1 protease.
Biochemistry, 37, 1998
1A8K
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CRYSTALLOGRAPHIC ANALYSIS OF HUMAN IMMUNODEFICIENCY VIRUS 1 PROTEASE WITH AN ANALOG OF THE CONSERVED CA-P2 SUBSTRATE: INTERACTIONS WITH FREQUENTLY OCCURRING GLUTAMIC ACID RESIDUE AT P2' POSITION OF SUBSTRATES
Descriptor: HIV PROTEASE, N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide
Authors:Weber, I.T, Wu, J, Adomat, J, Harrison, R.W, Kimmel, A.R, Wondrak, E.M, Louis, J.M.
Deposit date:1998-03-27
Release date:1999-01-13
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic analysis of human immunodeficiency virus 1 protease with an analog of the conserved CA-p2 substrate -- interactions with frequently occurring glutamic acid residue at P2' position of substrates.
Eur.J.Biochem., 249, 1997
1DAZ
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Structural and kinetic analysis of drug resistant mutants of HIV-1 protease
Descriptor: HIV-1 PROTEASE (RETROPEPSIN), N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide
Authors:Mahalingam, B, Louis, J.M, Reed, C.C, Adomat, J.M, Krouse, J, Wang, Y.F, Harrison, R.W, Weber, I.T.
Deposit date:1999-11-01
Release date:2000-05-03
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural and kinetic analysis of drug resistant mutants of HIV-1 protease.
Eur.J.Biochem., 263, 1999
7CUE
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BU of 7cue by Molmil
Crystal structure of HID2 bound to human Hemoglobin
Descriptor: Amino acid ABC transporter substrate-binding protein, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
Authors:Caaveiro, J.M.M, Hoshino, M, Tsumoto, K.
Deposit date:2020-08-22
Release date:2021-07-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural basis for the recognition of human hemoglobin by the Shr protein from Streptococcus pyogenes
To Be Published
7CUD
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Crystal structure of HID in the unbound form
Descriptor: Amino acid ABC transporter substrate-binding protein, BROMIDE ION
Authors:Caaveiro, J.M.M, Hoshino, M, Tsumoto, K.
Deposit date:2020-08-22
Release date:2021-07-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for the recognition of human hemoglobin by the Shr protein from Streptococcus pyogenes
To Be Published
3VD6
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BU of 3vd6 by Molmil
Both Zn Fingers of GATA1 Bound to Palindromic DNA Recognition Site, P21 Crystal Form
Descriptor: ACETATE ION, DNA (5'-D(*AP*AP*GP*AP*GP*TP*CP*CP*AP*TP*CP*TP*GP*AP*TP*AP*AP*GP*AP*C)-3'), DNA (5'-D(*TP*TP*GP*TP*CP*TP*TP*AP*TP*CP*AP*GP*AP*TP*GP*GP*AP*CP*TP*C)-3'), ...
Authors:Jacques, D.A, Ripin, N, Wilkinson-White, L.E, Guss, J.M, Matthews, J.M.
Deposit date:2012-01-04
Release date:2013-01-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:GATA1 directly mediates interactions with closely spaced pseudopalindromic but not distantly spaced double GATA sites on DNA.
Protein Sci., 24, 2015
2XU4
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CATHEPSIN L WITH A NITRILE INHIBITOR
Descriptor: (2S,4R)-4-(2-chlorophenyl)sulfonyl-1-[1-(4-fluorophenyl)cyclopropyl]carbonyl-N-[1-(iminomethyl)cyclopropyl]pyrrolidine-2-carboxamide, CATHEPSIN L1, GLYCEROL
Authors:Banner, D.W, Benz, J.M, Haap, W.
Deposit date:2010-10-14
Release date:2011-01-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Systematic Investigation of Halogen Bonding in Protein-Ligand Interactions.
Angew.Chem.Int.Ed.Engl., 50, 2011
2XU5
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CATHEPSIN L WITH A NITRILE INHIBITOR
Descriptor: (2S,4R)-4-(2-chlorophenyl)sulfonyl-N-[1-(iminomethyl)cyclopropyl]-1-[1-(4-methylphenyl)cyclopropyl]carbonyl-pyrrolidine-2-carboxamide, CATHEPSIN L1, CITRATE ANION, ...
Authors:Banner, D.W, Benz, J.M, Haap, W.
Deposit date:2010-10-14
Release date:2011-01-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Systematic Investigation of Halogen Bonding in Protein-Ligand Interactions.
Angew.Chem.Int.Ed.Engl., 50, 2011
7MRJ
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Crystal structure of a novel ubiquitin-like TINCR
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Forouhar, F, Morgado-Palacin, L, Brown, J.A, Martinez, T, Pedrero, J.M.G, Reglero, C, Chaudhry, I, Vaughan, J, Rodriguez-Perales, S, Allonca, E, Granda-Diaz, R, Quinn, S.A, Fernandez, A.F, Fraga, M.F, Kim, A.L, Santos-Juanes, J, Owens, D.M, Rodrigo, J.P, Saghatelian, A, Ferrando, A.A.
Deposit date:2021-05-07
Release date:2022-03-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:The TINCR ubiquitin-like microprotein is a tumor suppressor in squamous cell carcinoma.
Nat Commun, 14, 2023
4D28
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Crystal structure of the kinase domain of CIPK24/SOS2
Descriptor: CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 24
Authors:Gonzalez-Rubio, J.M, Chaves-Sanjuan, A, Sanchez-Barrena, M.J, Albert, A.
Deposit date:2014-05-08
Release date:2014-10-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural Basis of the Regulatory Mechanism of the Plant Cipk Family of Protein Kinases Controlling Ion Homeostasis and Abiotic Stress
Proc.Natl.Acad.Sci.USA, 111, 2014
7M5W
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BU of 7m5w by Molmil
Crystal structure of the HMG-C1 domain of human capicua bound to DNA
Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*TP*TP*TP*TP*TP*CP*AP*TP*TP*CP*AP*TP*AP*AP*CP*C)-3'), DNA (5'-D(*GP*GP*TP*TP*AP*TP*GP*AP*AP*TP*GP*AP*AP*AP*AP*AP*GP*C)-3'), ...
Authors:Webb, J.P, Liew, J.J.M, Gnann, A.D, Dowling, D.P.
Deposit date:2021-03-25
Release date:2022-04-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Molecular basis of DNA recognition by the HMG-box-C1 module of Capicua
Biorxiv, 2022
176D
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BU of 176d by Molmil
NMR SOLUTION STRUCTURE OF A PEPTIDE NUCLEIC ACID COMPLEXED WITH RNA
Descriptor: DNA (5'-D(*GPN*APN*APN*CPN*TPN*CPN)-3'), RNA (5'-R(P*GP*AP*GP*UP*UP*C)-3')
Authors:Brown, S.C, Veal, J.M.
Deposit date:1994-05-17
Release date:1994-11-01
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:NMR solution structure of a peptide nucleic acid complexed with RNA.
Science, 265, 1994
1A8V
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BU of 1a8v by Molmil
STRUCTURE OF THE RNA-BINDING DOMAIN OF THE RHO TRANSCRIPTION TERMINATOR
Descriptor: COPPER (II) ION, TRANSCRIPTION TERMINATION FACTOR RHO
Authors:Fass, D, Bogden, C, Berger, J.M.
Deposit date:1998-03-28
Release date:1999-05-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structural basis for terminator recognition by the Rho transcription termination factor.
Mol.Cell, 3, 1999
1A92
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BU of 1a92 by Molmil
OLIGOMERIZATION DOMAIN OF HEPATITIS DELTA ANTIGEN
Descriptor: DELTA ANTIGEN
Authors:Zuccola, H.J, Hogle, J.M.
Deposit date:1998-04-15
Release date:1999-06-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of the oligomerization of hepatitis delta antigen.
Structure, 6, 1998
1B69
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BU of 1b69 by Molmil
THE SOLUTION STRUCTURE OF TN916 INTEGRASE N-TERMINAL DOMAIN/DNA COMPLEX
Descriptor: DNA (5'-D(*GP*AP*AP*TP*TP*TP*AP*CP*TP*AP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*TP*AP*GP*TP*AP*AP*AP*TP*TP*C)-3'), PROTEIN (INTEGRASE)
Authors:Clubb, R.T, Wojciak, J.M, Connolly, K.M.
Deposit date:1999-01-21
Release date:1999-09-29
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR structure of the Tn916 integrase-DNA complex.
Nat.Struct.Biol., 6, 1999
1BAI
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BU of 1bai by Molmil
Crystal structure of Rous sarcoma virus protease in complex with inhibitor
Descriptor: N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide, PROTEASE
Authors:Wu, J, Adomat, J.M, Ridky, T.W, Louis, J.M, Leis, J, Harrison, R.W, Weber, I.T.
Deposit date:1998-04-17
Release date:1999-01-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for specificity of retroviral proteases.
Biochemistry, 37, 1998
1B79
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BU of 1b79 by Molmil
N-TERMINAL DOMAIN OF DNA REPLICATION PROTEIN DNAB
Descriptor: DnaB Helicase
Authors:Fass, D, Bogden, C.E, Berger, J.M.
Deposit date:1999-01-28
Release date:1999-06-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the N-terminal domain of the DnaB hexameric helicase.
Structure Fold.Des., 7, 1999
3E4C
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BU of 3e4c by Molmil
Procaspase-1 zymogen domain crystal structure
Descriptor: Caspase-1, MAGNESIUM ION
Authors:Elliott, J.M, Rouge, L, Wiesmann, C, Scheer, J.M.
Deposit date:2008-08-11
Release date:2008-12-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of procaspase-1 zymogen domain reveals insight into inflammatory caspase autoactivation
J.Biol.Chem., 284, 2009
1B2J
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CLOSTRIDIUM PASTEURIANUM RUBREDOXIN G43A MUTANT
Descriptor: FE (III) ION, PROTEIN (RUBREDOXIN)
Authors:Maher, M.J, Guss, J.M, Wilce, M.C.J, Wedd, A.G.
Deposit date:1998-11-27
Release date:1999-05-27
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Rubredoxin from Clostridium pasteurianum. Structures of G10A, G43A and G10VG43A mutant proteins. Mutation of conserved glycine 10 to valine causes the 9-10 peptide link to invert.
Acta Crystallogr.,Sect.D, 55, 1999
1B34
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CRYSTAL STRUCTURE OF THE D1D2 SUB-COMPLEX FROM THE HUMAN SNRNP CORE DOMAIN
Descriptor: PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1), PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2)
Authors:Walke, S, Young, R.J, Kambach, C, Avis, J.M, De La Fortelle, E, Li, J, Nagai, K.
Deposit date:1998-12-17
Release date:2000-01-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs.
Cell(Cambridge,Mass.), 96, 1999
1B2O
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BU of 1b2o by Molmil
CLOSTRIDIUM PASTEURIANUM RUBREDOXIN G10VG43A MUTANT
Descriptor: FE (III) ION, PROTEIN (RUBREDOXIN)
Authors:Maher, M.J, Guss, J.M, Wilce, M.C.J, Wedd, A.G.
Deposit date:1998-11-30
Release date:1999-05-27
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Rubredoxin from Clostridium pasteurianum. Structures of G10A, G43A and G10VG43A mutant proteins. Mutation of conserved glycine 10 to valine causes the 9-10 peptide link to invert.
Acta Crystallogr.,Sect.D, 55, 1999
1B8I
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BU of 1b8i by Molmil
STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX
Descriptor: DNA (5'-D(*AP*CP*GP*TP*GP*AP*TP*TP*TP*AP*TP*GP*GP*CP*G)-3'), DNA (5'-D(*GP*TP*CP*GP*CP*CP*AP*TP*AP*AP*AP*TP*CP*AP*C)-3'), PROTEIN (HOMEOBOX PROTEIN EXTRADENTICLE), ...
Authors:Passner, J.M, Ryoo, H.-D, Shen, L, Mann, R.S, Aggarwal, A.K.
Deposit date:1999-02-01
Release date:1999-04-12
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of a DNA-bound Ultrabithorax-Extradenticle homeodomain complex.
Nature, 397, 1999
2O8R
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Crystal Structure of Polyphosphate Kinase from Porphyromonas Gingivalis
Descriptor: Polyphosphate kinase, SULFATE ION
Authors:Patskovsky, Y, Toro, R, Sauder, J.M, Dickey, M, Adams, J.M, Ozyurt, S, Wasserman, S.R, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2006-12-12
Release date:2006-12-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of Polyphosphate Kinase from Porphyromonas Gingivalis
To be Published

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