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PDB: 6647 results

2HJO
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Crystal structure of V224H design intermediate for GFP metal ion reporter
Descriptor: 1,2-ETHANEDIOL, Green Fluorescent Protein, MAGNESIUM ION
Authors:Barondeau, D.P, Tubbs, J.L, Tainer, J.A, Getzoff, E.D.
Deposit date:2006-06-30
Release date:2008-04-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Iterative Structure-Based Design of a Green Fluorescent Protein Metal Ion Reporter
To be Published
6DLB
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BU of 6dlb by Molmil
Crystal Structure of an influenza A hemagglutinin antibody Fab CH65:1203d4 chimera
Descriptor: CH65:1203d4 Fab heavy chain, CH65:1203d4 Fab light chain, SULFATE ION
Authors:Dong, J, Finn, J.A, Crowe, J.E.
Deposit date:2018-05-31
Release date:2019-06-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Identification of Structurally Related Antibodies in Antibody Sequence Databases Using Rosetta-Derived Position-Specific Scoring.
Structure, 28, 2020
2HQZ
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BU of 2hqz by Molmil
Crystal structure of L42H design intermediate for GFP metal ion reporter
Descriptor: 1,2-ETHANEDIOL, Green fluorescent protein, MAGNESIUM ION
Authors:Barondeau, D.P, Tubbs, J.L, Tainer, J.A, Getzoff, E.D.
Deposit date:2006-07-19
Release date:2008-04-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Iterative Structure-Based Design of a Green Fluorescent Protein Metal Ion Reporter
To be Published
2HXT
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BU of 2hxt by Molmil
Crystal structure of L-Fuconate Dehydratase from Xanthomonas campestris liganded with Mg++ and D-erythronohydroxamate
Descriptor: (2R,3R)-N,2,3,4-TETRAHYDROXYBUTANAMIDE, L-fuconate dehydratase, MAGNESIUM ION
Authors:Fedorov, A.A, Fedorov, E.V, Yew, W.S, Rakus, J.F, Gerlt, J.A, Almo, S.C.
Deposit date:2006-08-03
Release date:2006-12-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Evolution of Enzymatic Activities in the Enolase Superfamily: l-Fuconate Dehydratase from Xanthomonas campestris.
Biochemistry, 45, 2006
6FFI
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BU of 6ffi by Molmil
Crystal Structure of mGluR5 in complex with MMPEP at 2.2 A
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-[2-(3-methoxyphenyl)ethynyl]-6-methyl-pyridine, Metabotropic glutamate receptor 5,Endolysin,Metabotropic glutamate receptor 5, ...
Authors:Christopher, J.A, Orgovan, Z, Congreve, M, Dore, A.S, Errey, J.C, Marshall, F.H, Mason, J.S, Okrasa, K, Rucktooa, P, Serrano-Vega, M.J, Ferenczy, G.G, Keseru, G.M.
Deposit date:2018-01-08
Release date:2018-03-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-Based Optimization Strategies for G Protein-Coupled Receptor (GPCR) Allosteric Modulators: A Case Study from Analyses of New Metabotropic Glutamate Receptor 5 (mGlu5) X-ray Structures.
J.Med.Chem., 62, 2019
6E9Z
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BU of 6e9z by Molmil
DHF119 filament
Descriptor: DHF119 filament
Authors:Lynch, E.M, Shen, H, Fallas, J.A, Kollman, J.M, Baker, D.
Deposit date:2018-08-01
Release date:2018-11-21
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:De novo design of self-assembling helical protein filaments.
Science, 362, 2018
2HXZ
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BU of 2hxz by Molmil
Crystal Structure of Cathepsin S in complex with a Nonpeptidic Inhibitor (Hexagonal spacegroup)
Descriptor: Cathepsin S, N-[(1S)-1-{1-[(1R,3E)-1-ACETYLPENT-3-EN-1-YL]-1H-1,2,3-TRIAZOL-4-YL}-1,2-DIMETHYLPROPYL]BENZAMIDE, SULFATE ION
Authors:Patterson, A.W, Wood, W.J, Hornsby, M, Lesley, S, Spraggon, G, Ellman, J.A.
Deposit date:2006-08-04
Release date:2006-10-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Identification of selective, nonpeptidic nitrile inhibitors of cathepsin s using the substrate activity screening method.
J.Med.Chem., 49, 2006
6EGP
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BU of 6egp by Molmil
Crystal Structure of a Trigonal Pyramidal Pb(II)S3 Complex in a Three-stranded Coiled coil Peptide
Descriptor: LEAD (II) ION, Pb(II)(GRAND CoilSerL12AL16C)3-, ZINC ION
Authors:Ruckthong, L, Stuckey, J.A, Pecoraro, V.L.
Deposit date:2018-08-20
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal Structure of a Trigonal Pyramidal Pb(II)S3 Complex in a Three-stranded Coiled coil Peptide
To Be Published
2I5B
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The crystal structure of an ADP complex of Bacillus subtilis pyridoxal kinase provides evidence for the parralel emergence of enzyme activity during evolution
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Phosphomethylpyrimidine kinase
Authors:Newman, J.A, Das, S.K, Sedelnikova, S.E, Rice, D.W.
Deposit date:2006-08-24
Release date:2006-09-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The Crystal Structure of an ADP Complex of Bacillus subtilis Pyridoxal Kinase Provides Evidence for the Parallel Emergence of Enzyme Activity During Evolution.
J.Mol.Biol., 363, 2006
2HZ2
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BU of 2hz2 by Molmil
The x-ray crystal structure of ferric Synechocystis hemoglobin H117A mutant with a covalent linkage
Descriptor: CADMIUM ION, Cyanoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Hoy, J.A.
Deposit date:2006-08-08
Release date:2006-08-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Covalent heme attachment in Synechocystis hemoglobin is required to prevent ferrous heme dissociation
Protein Sci., 16, 2007
6FNP
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BU of 6fnp by Molmil
Crystal structure of ECF-CbrT, a cobalamin transporter
Descriptor: Energy-coupling factor transporter ATP-binding protein EcfA1, Energy-coupling factor transporter ATP-binding protein EcfA2, Energy-coupling factor transporter transmembrane protein EcfT, ...
Authors:Santos, J.A, Rempel, S, Guskov, A, Slotboom, D.J.
Deposit date:2018-02-05
Release date:2018-07-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Functional and structural characterization of an ECF-type ABC transporter for vitamin B12.
Elife, 7, 2018
2HZ3
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BU of 2hz3 by Molmil
The x-ray crystal structure of ferrous Synechocystis hemoglobin H117A mutant with a covalent linkage
Descriptor: CADMIUM ION, Cyanoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Hoy, J.A.
Deposit date:2006-08-08
Release date:2006-08-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Covalent heme attachment in Synechocystis hemoglobin is required to prevent ferrous heme dissociation
Protein Sci., 16, 2007
6FBT
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BU of 6fbt by Molmil
The X-ray Structure of Lytic Transglycosylase Slt from Pseudomonas aeruginosa in complex with the reaction product NAG-anhNAMpentapeptide
Descriptor: 2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, NAG-anhNAMpentapeptide, ...
Authors:Batuecas, M.T, Dominguez-Gil, T, Hermoso, J.A.
Deposit date:2017-12-19
Release date:2018-04-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Exolytic and endolytic turnover of peptidoglycan by lytic transglycosylase Slt ofPseudomonas aeruginosa.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6FC8
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CHK1 KINASE IN COMPLEX WITH COMPOUND 13
Descriptor: 2-(3-fluorophenyl)-4-[[(3~{S})-piperidin-3-yl]amino]thieno[3,2-c]pyridine-7-carboxamide, SULFATE ION, Serine/threonine-protein kinase Chk1
Authors:Read, J.A, Breed, J.
Deposit date:2017-12-20
Release date:2018-01-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Adventures in Scaffold Morphing: Discovery of Fused Ring Heterocyclic Checkpoint Kinase 1 (CHK1) Inhibitors.
J. Med. Chem., 61, 2018
2GVG
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BU of 2gvg by Molmil
Crystal Structure of human NMPRTase and its complex with NMN
Descriptor: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, Nicotinamide phosphoribosyltransferase, PHOSPHATE ION
Authors:Khan, J.A, Tao, X, Tong, L.
Deposit date:2006-05-02
Release date:2006-06-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular basis for the inhibition of human NMPRTase, a novel target for anticancer agents.
Nat.Struct.Mol.Biol., 13, 2006
2H74
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BU of 2h74 by Molmil
Crystal Structure of Thioredoxin Mutant D2E in Hexagonal (p61) Space Group
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Thioredoxin
Authors:Gavira, J.A, Godoy-Ruiz, R, Ibarra-Molero, B, Sanchez-Ruiz, J.M.
Deposit date:2006-06-01
Release date:2007-05-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of Thioredoxin Mutant D2E in Hexagonal (p61) Space Group
To be Published
2HBQ
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BU of 2hbq by Molmil
Crystal structure of wildtype human caspase-1 in complex with 3-[2-(2-benzyloxycarbonylamino-3-methyl-butyrylamino)-propionylamino]-4-oxo-pentanoic acid (z-VAD-FMK)
Descriptor: Caspase-1, N-[(benzyloxy)carbonyl]-L-valyl-N-[(2S)-1-carboxy-4-fluoro-3-oxobutan-2-yl]-L-alaninamide
Authors:Scheer, J.M, Wells, J.A, Romanowski, M.J.
Deposit date:2006-06-14
Release date:2006-06-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A Common Allosteric Site and Mechanism in Caspases
Proc.Natl.Acad.Sci.USA, 103, 2006
2KZM
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BU of 2kzm by Molmil
KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC AND MANGANESE
Descriptor: DNA (5'-D(*GP*CP*TP*TP*A*CP*GP*C)-3'), MANGANESE (II) ION, PROTEIN (DNA POLYMERASE I), ...
Authors:Brautigam, C.A, Sun, S, Piccirilli, J.A, Steitz, T.A.
Deposit date:1998-07-03
Release date:1999-02-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures of normal single-stranded DNA and deoxyribo-3'-S-phosphorothiolates bound to the 3'-5' exonucleolytic active site of DNA polymerase I from Escherichia coli.
Biochemistry, 38, 1999
6E5L
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BU of 6e5l by Molmil
Crystal structure of human cellular retinol binding protein 1 in complex with abnormal-cannabidiol (abn-CBD)
Descriptor: (1'R,2'R)-5'-methyl-6-pentyl-2'-(prop-1-en-2-yl)-1',2',3',4'-tetrahydro[1,1'-biphenyl]-2,4-diol, Retinol-binding protein 1
Authors:Silvaroli, J.A, Banerjee, S, Kiser, P.D, Golczak, M.
Deposit date:2018-07-20
Release date:2019-02-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Abnormal Cannabidiol Modulates Vitamin A Metabolism by Acting as a Competitive Inhibitor of CRBP1.
Acs Chem.Biol., 14, 2019
6E9T
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BU of 6e9t by Molmil
DHF58 filament
Descriptor: DHF58 filament
Authors:Lynch, E.M, Shen, H, Fallas, J.A, Kollman, J.M, Baker, D.
Deposit date:2018-08-01
Release date:2018-11-21
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (5.4 Å)
Cite:De novo design of self-assembling helical protein filaments.
Science, 362, 2018
6E5V
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BU of 6e5v by Molmil
human mGlu8 receptor amino terminal domain in complex with (S)-3,4-Dicarboxyphenylglycine (DCPG)
Descriptor: 4-[(S)-amino(carboxy)methyl]benzene-1,2-dicarboxylic acid, CHLORIDE ION, Metabotropic glutamate receptor 8
Authors:Chen, Q, Ho, J.D, Ashok, S, Vargas, M.C, Wang, J, Atwell, S, Bures, M, Schkeryantz, J.M, Monn, J.A, Hao, J.
Deposit date:2018-07-23
Release date:2018-11-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural Basis for ( S)-3,4-Dicarboxyphenylglycine (DCPG) As a Potent and Subtype Selective Agonist of the mGlu8Receptor.
J. Med. Chem., 61, 2018
2HT6
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BU of 2ht6 by Molmil
Crystal structure of Human Gem G-domain bound to GDP
Descriptor: GTP-binding protein GEM, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Opatowsky, Y, Hirsch, J.A.
Deposit date:2006-07-25
Release date:2006-10-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure-function studies of the G-domain from human gem, a novel small G-protein.
Febs Lett., 580, 2006
2HNE
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BU of 2hne by Molmil
Crystal structure of l-fuconate dehydratase from xanthomonas campestris pv. campestris str. ATCC 33913
Descriptor: L-fuconate dehydratase, MAGNESIUM ION
Authors:Fedorov, A.A, Fedorov, E.V, Yew, W.S, Gerlt, J.A, Almo, S.C, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2006-07-12
Release date:2006-07-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of l-fuconate dehydratase from xanthomonas campestris pv. campestris str. ATCC 33913
To be Published
2HO2
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BU of 2ho2 by Molmil
Structure of human FE65-WW domain in complex with hMena peptide.
Descriptor: Amyloid beta A4 protein-binding family B member 1, GLYCEROL, Protein enabled homolog
Authors:Meiyappan, M, Birrane, G, Ladias, J.A.
Deposit date:2006-07-13
Release date:2007-07-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Structural Basis for Polyproline Recognition by the FE65 WW Domain.
J.Mol.Biol., 372, 2007
2HIL
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Structure of the Neisseria gonorrhoeae Type IV pilus filament from x-ray crystallography and electron cryomicroscopy
Descriptor: Fimbrial protein, PHOSPHORIC ACID MONO-(2-AMINO-ETHYL) ESTER, alpha-D-galactopyranose-(1-3)-2,4-bisacetamido-2,4-dideoxy-beta-D-glucopyranose
Authors:Craig, L, Volkmann, N, Egelman, E.H, Tainer, J.A.
Deposit date:2006-06-29
Release date:2006-09-12
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (12.5 Å)
Cite:Type IV Pilus Structure by Cryo-Electron Microscopy and Crystallography: Implications for Pilus Assembly and Functions.
Mol.Cell, 23, 2006

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