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PDB: 42745 results

2GT7
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Crystal structure of SARS coronavirus main peptidase at pH 6.0 in the space group P21
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3C-like proteinase
Authors:Lee, T.-W, Cherney, M.M, Huitema, C, Liu, J, James, K.E, Powers, J.C, Eltis, L.D, James, M.N.G.
Deposit date:2006-04-27
Release date:2006-12-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Crystal Structures Reveal an Induced-fit Binding of a Substrate-like Aza-peptide Epoxide to SARS Coronavirus Main Peptidase.
J.Mol.Biol., 366, 2007
2GUP
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Structural Genomics, the crystal structure of a ROK family protein from Streptococcus pneumoniae TIGR4 in complex with sucrose
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ROK family protein, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Tan, K, Li, H, Abdullah, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-05-01
Release date:2006-05-30
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:The crystal structure of a ROK family protein from Streptococcus pneumoniae TIGR4 in complex with sucrose
To be Published
2GYQ
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YcfI, a putative structural protein from Rhodopseudomonas palustris.
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, FE (III) ION, ...
Authors:Osipiuk, J, Evdokimova, E, Kudritska, M, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-05-09
Release date:2006-06-13
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:X-ray crystal structure of YcfI protein, a putative structural protein from Rhodopseudomonas palustris.
To be Published
2GZX
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Crystal Structure of the TatD deoxyribonuclease MW0446 from Staphylococcus aureus. Northeast Structural Genomics Consortium Target ZR237.
Descriptor: NICKEL (II) ION, putative TatD related DNase
Authors:Vorobiev, S.M, Neely, H, Seetharaman, J, Wang, D, Fang, Y, Xiao, R, Acton, T, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-05-12
Release date:2006-07-11
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of the TatD deoxyribonuclease MW0446 from Staphylococcus aureus. Northeast Structural Genomics Consortium Target ZR237.
To be Published
2GJT
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Crystal structure of the human receptor phosphatase PTPRO
Descriptor: CHLORIDE ION, Receptor-type tyrosine-protein phosphatase PTPRO
Authors:Barr, A, Ugochukwu, E, Eswaran, J, Das, S, Niesen, F, Savitsky, P, Turnbull, A, Sundstrom, M, Arrowsmith, C, Edwards, A, Weigelt, J, von Delft, F, Papagrigoriou, E, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2006-03-31
Release date:2006-05-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Large-scale structural analysis of the classical human protein tyrosine phosphatome.
Cell(Cambridge,Mass.), 136, 2009
2GMY
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Crystal Structure of a Protein of Unknown Function ATU0492 from Agrobacterium tumefaciens, Putative Antioxidant Defence Protein AhpD
Descriptor: Hypothetical protein Atu0492
Authors:Zhang, R, Xu, X, Gu, J, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-04-07
Release date:2006-05-09
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The crystal structure of a hypothetical protein Atu0492 from Agrobacterium tumefaciens
To be Published
2GSS
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BU of 2gss by Molmil
HUMAN GLUTATHIONE S-TRANSFERASE P1-1 IN COMPLEX WITH ETHACRYNIC ACID
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ETHACRYNIC ACID, GLUTATHIONE S-TRANSFERASE P1-1, ...
Authors:Oakley, A.J, Rossjohn, J, Parker, M.W.
Deposit date:1996-10-29
Release date:1997-11-12
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The three-dimensional structure of the human Pi class glutathione transferase P1-1 in complex with the inhibitor ethacrynic acid and its glutathione conjugate.
Biochemistry, 36, 1997
2L0S
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BU of 2l0s by Molmil
Solution Structure of Human Plasminogen Kringle 3
Descriptor: Plasminogen
Authors:Christen, M.T, Frank, P, Schaller, J, Llinas, M.
Deposit date:2010-07-15
Release date:2010-08-04
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Human plasminogen kringle 3: solution structure, functional insights, phylogenetic landscape.
Biochemistry, 49, 2010
2GSW
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BU of 2gsw by Molmil
Crystal Structure of the Putative NADPH-dependent Azobenzene FMN-Reductase YhdA from Bacillus subtilis, Northeast Structural Genomics Target SR135
Descriptor: FLAVIN MONONUCLEOTIDE, yhdA
Authors:Forouhar, F, Hussain, M, Jayaraman, S, Shen, J, Cooper, B, Cunningham, K, Janjua, H, Ma, L.-C, Xiao, R, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-04-26
Release date:2006-05-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:Crystal Structure of the Putative NADPH-dependent Azobenzene FMN-Reductase YhdA from Bacillus subtilis, Northeast Structural Genomics Target SR135
To be Published
2GTB
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BU of 2gtb by Molmil
Crystal structure of SARS coronavirus main peptidase (with an additional Ala at the N-terminus of each protomer) inhibited by an aza-peptide epoxide in the space group P43212
Descriptor: (5S,8S,14R)-ETHYL 11-(3-AMINO-3-OXOPROPYL)-8-BENZYL-14-HYDROXY-5-ISOBUTYL-3,6,9,12-TETRAOXO-1-PHENYL-2-OXA-4,7,10,11-TETRAAZAPENTADECAN-15-OATE, 3C-like proteinase, ACETIC ACID
Authors:Lee, T.-W, Cherney, M.M, Huitema, C, Liu, J, James, K.E, Powers, J.C.
Deposit date:2006-04-27
Release date:2006-12-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures Reveal an Induced-fit Binding of a Substrate-like Aza-peptide Epoxide to SARS Coronavirus Main Peptidase.
J.Mol.Biol., 366, 2007
2GZL
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BU of 2gzl by Molmil
Structure of 2C-methyl-D-erythritol 2,4-clycodiphosphate synthase complexed with a CDP derived fluorescent inhibitor
Descriptor: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, 5'-O-{[({[2-({[5-(DIMETHYLAMINO)NAPHTHALEN-1-YL]SULFONYL}AMINO)ETHYL]OXY}PHOSPHINATO)OXY]PHOSPHINATO}CYT, GERANYL DIPHOSPHATE, ...
Authors:Crane, C.M, Kaiser, J, Ramsden, N.L, Lauw, S, Rohdich, F, Wolfgang, E, Hunter, W.N, Bacher, A, Diederich, F.
Deposit date:2006-05-11
Release date:2006-11-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Fluorescent Inhibitors for Ispf, an Enzyme in the Non-Mevalonate Pathway for Isoprenoid Biosynthesis and a Potential Target for Antimalarial Therapy.
Angew.Chem.Int.Ed.Engl., 45, 2006
1DSB
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BU of 1dsb by Molmil
CRYSTAL STRUCTURE OF THE DSBA PROTEIN REQUIRED FOR DISULPHIDE BOND FORMATION IN VIVO
Descriptor: DSBA
Authors:Martin, J.L, Bardwell, J.C.A, Kuriyan, J.
Deposit date:1993-05-24
Release date:1994-01-31
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the DsbA protein required for disulphide bond formation in vivo.
Nature, 365, 1993
2H06
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BU of 2h06 by Molmil
Crystal structure of human phosphoribosyl pyrophosphate synthetase 1
Descriptor: Ribose-phosphate pyrophosphokinase I, SULFATE ION
Authors:Li, S, Peng, B, Ding, J.
Deposit date:2006-05-14
Release date:2006-10-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of human phosphoribosylpyrophosphate synthetase 1 reveals a novel allosteric site
Biochem.J., 401, 2007
2H5F
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BU of 2h5f by Molmil
Denmotoxin: A the three-finger toxin from colubrid snake Boiga dendrophila with bird-specific activity
Descriptor: PHOSPHATE ION, POTASSIUM ION, SODIUM ION, ...
Authors:Pawlak, J, Kini, R.M, Stura, E.A.
Deposit date:2006-05-26
Release date:2006-08-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Denmotoxin, a three-finger toxin from the colubrid snake Boiga dendrophila (Mangrove Catsnake) with bird-specific activity.
J.Biol.Chem., 281, 2006
2GKP
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BU of 2gkp by Molmil
Protein of Unknown Function NMB0488 from Neisseria meningitidis
Descriptor: 1,2-ETHANEDIOL, BETA-MERCAPTOETHANOL, SODIUM ION, ...
Authors:Osipiuk, J, Volkart, L, Bargassa, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-04-03
Release date:2006-05-02
Last modified:2021-03-10
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:X-ray crystal structure of hypothetical protein NMB0488 from Neisseria meningitidis.
To be Published
2DLB
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BU of 2dlb by Molmil
X-ray Crystal Structure of Protein yopT from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR412
Descriptor: yopT
Authors:Kuzin, A.P, Chen, Y, Seetharaman, J, Ho, C.-K, Cunningham, K, Janjua, H, Conover, K, Ma, L.-C, Xiao, R, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-04-18
Release date:2006-04-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:X-ray structure of hypothetical protein from Bacillus subtilis O34498 at the resolution of 1.2A. NESG target SR412
To be published
2DPC
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BU of 2dpc by Molmil
Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine
Descriptor: (6-AMINOHEXYL)CARBAMIC ACID, COBALT (II) ION, DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*(OMU)P*DCP*DGP*DCP*DG)-3'), ...
Authors:Juan, E.C.M, Kondo, J, Kurihara, T, Ito, T, Ueno, Y, Matsuda, A, Takenaka, A.
Deposit date:2006-05-08
Release date:2007-04-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules
Nucleic Acids Res., 35, 2007
2LYA
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BU of 2lya by Molmil
Structure of HIV-1 myr(-) matrix protein in complex with 1,2-dioctanoyl-sn-phosphatidylcholine
Descriptor: 1,2-DIOCTANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Matrix protein p17
Authors:Vlach, J, Saad, J.
Deposit date:2012-09-14
Release date:2013-02-13
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Trio engagement via plasma membrane phospholipids and the myristoyl moiety governs HIV-1 matrix binding to bilayers.
Proc.Natl.Acad.Sci.USA, 110, 2013
2DDR
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BU of 2ddr by Molmil
Crystal structure of sphingomyelinase from Bacillus cereus with calcium ion
Descriptor: CALCIUM ION, Sphingomyelin phosphodiesterase
Authors:Ago, H, Oda, M, Takahashi, M, Tsuge, H, Ochi, S, Katunuma, N, Miyano, M, Sakurai, J, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-02-02
Release date:2006-05-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Basis of the Sphingomyelin Phosphodiesterase Activity in Neutral Sphingomyelinase from Bacillus cereus.
J.Biol.Chem., 281, 2006
2DM6
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BU of 2dm6 by Molmil
Crystal structure of anti-configuration of indomethacin and leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase complex
Descriptor: INDOMETHACIN, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADP-dependent leukotriene B4 12-hydroxydehydrogenase, ...
Authors:Hori, T, Ishijima, J, Yokomizo, T, Ago, H, Shimizu, T, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-20
Release date:2006-11-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of anti-configuration of indomethacin and leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase complex reveals the structural basis of broad spectrum indomethacin efficacy
J.Biochem.(Tokyo), 140, 2006
2DP7
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Crystal Structure of D(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-deoxyuridine
Descriptor: (6-AMINOHEXYL)CARBAMIC ACID, DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DUP*DCP*DGP*DCP*DG)-3'), MAGNESIUM ION, ...
Authors:Juan, E.C.M, Kondo, J, Kurihara, T, Ito, T, Ueno, Y, Matsuda, A, Takenaka, A.
Deposit date:2006-05-08
Release date:2007-04-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules
Nucleic Acids Res., 35, 2007
2M44
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DNA containing a cluster of 8-oxo-guanine and abasic site lesion: beta anomer (6AP, 8OG14)
Descriptor: DNA (5'-D(*CP*GP*CP*TP*CP*(AAB)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*(8OG)P*TP*GP*GP*GP*AP*GP*CP*G)-3')
Authors:Zalesak, J, Jourdan, M, Constant, J, Lourdin, M.
Deposit date:2013-01-29
Release date:2014-01-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions.
J.Mol.Biol., 426, 2014
1E9C
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BU of 1e9c by Molmil
Mutant human thymidylate kinase complexed with TMP and APPNP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Ostermann, N, Lavie, A, Padiyar, S, Brundiers, R, Veit, T, Reintein, J, Goody, R.S, Konrad, M, Schlichting, I.
Deposit date:2000-10-10
Release date:2001-10-11
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Potentiating Azt Activation: Structures of Wildtype and Mutant Human Thymidylate Kinase Suggest Reasons for the Mutants' Improved Kinetics with the HIV Prodrug Metabolite Aztmp
J.Mol.Biol., 304, 2000
2DT0
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Crystal structure of the complex of goat signalling protein with the trimer of N-acetylglucosamine at 2.45A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase-3-like protein 1, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Kumar, J, Ethayathulla, A.S, Srivastava, D.B, Singh, N, Sharma, S, Bhushan, A, Srinivasan, A, Singh, T.P.
Deposit date:2006-07-09
Release date:2006-07-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Carbohydrate-binding properties of goat secretory glycoprotein (SPG-40) and its functional implications: structures of the native glycoprotein and its four complexes with chitin-like oligosaccharides
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
2DPD
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Crystal structure of the Replication Termination Protein in complex with a pseudosymmetric B-site
Descriptor: 5'-D(*CP*TP*AP*TP*GP*AP*AP*CP*AP*TP*AP*AP*TP*GP*TP*TP*CP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*GP*AP*AP*CP*AP*TP*TP*AP*TP*GP*TP*TP*CP*AP*TP*AP*G)-3', Replication termination protein
Authors:Vivian, J.P, Wilce, J, Wilce, M.C.J.
Deposit date:2006-05-09
Release date:2007-05-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:Crystal structure of the Replication Termination Protein in complex with a pseudosymmetric B-site
to be published

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